RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
ACTN1	2	0.970	-0.750		1.417	-0.948
ACTN1	2	0.970	-0.750	0.936	1.929	-1.407	0.572	0.293
ACTN1	2	0.970	-0.750	0.790			0.055	0.246
ERCC2	2	-0.590	1.060	-0.491		1.066
P4HB	2	-1.530	2.950	0.990	0.813	0.711	0.548	0.459
VCAN	1	0.760	-0.630
VCAN	1	0.760	-0.630
LAMB1	1	-0.210	0.090				-0.236	-0.180
P3H1	1	-2.060	3.660			-0.329	0.349	0.449
COLGALT1	1	-1.610	2.510				0.052	0.252
FBN2	1	1.100	-0.880
MFAP1	1	-0.830	1.700	-0.548			-0.753	0.008
CASK	1	2.050	-1.110
CASK	1	2.050	-1.110	-0.162	-0.217	-0.918	0.048	0.372
DST	1	0.080	-0.480
DST	1	0.080	-0.480		0.991	1.748
DST	1	0.080	-0.480	0.105			-0.034	0.278
DST	1	0.080	-0.480				0.796	0.236
APBB2	1	0.800	-0.750
PPIB	1	-0.320	1.070		1.818	-1.512	0.460	0.205
TNXB	1	-1.880	3.580
SDC2	1	-1.780	3.110
LAMB2	1	-1.480	2.650
COL18A1	1	-1.230	1.530				1.871	0.304
PDGFA	1	0.190	-0.340		-2.109	1.885
DMD	1	0.960	-0.560				0.854	0.214
CD44	0	0.270	-0.230
MFAP3	0	-1.030	1.150
NFKB2	0	1.750	-0.820
PLOD1	0	1.110	-1.080	0.314	0.119	0.095	0.283	0.387
APLP2	0	-0.080	0.400
P3H2	0	-0.270	0.450			-0.329	0.349	0.449
ITGA6	0	-0.530	0.420	-0.133			-0.561	-0.048
BMP7	0
TIMP1	0	0.660	-0.830
MMP15	0	1.100	-1.160
TGFB1	0	-0.550	1.050
PTPRS	0	0.140	0.270				-0.194	0.365
DNAJB6	0	-0.790	1.040
DNAJB6	0	-0.180	-0.540
DNAJB6	0	-0.790	1.040	0.289			0.451
DNAJB6	0	-0.180	-0.540	0.289			0.451
PLOD3	0	1.080	-0.590
PLOD3	0	1.080	-0.590				0.104	0.379
ITGB6	0	-0.450	0.870				1.047	0.718
CTSD	0	0.580	-0.790	-0.768		-2.790	-0.655	-1.981
TGFB3	0	0.900	-0.540
SDC4	0	1.110	-0.650
MATN4	0	0.970	-0.430		-0.245	-0.120
SMARCA4	0	-0.810	1.520	0.629	-0.158	0.141	0.337	0.333
LOXL1	0	-0.150	-0.060
LAMA5	0	-1.280	1.860	1.257			0.402	0.337
POMT1	0	-0.330	-0.260
GFAP	0	0.930	-0.340				0.523	-5.250
LGALS3	0	0.430	-0.510		-0.143	-1.425
COL4A2	0	-0.170	0.350				-0.692	-0.297
LAMC1	0	0.650	-1.240				-0.164	0.459
ADAM10	0	1.400	-1.040				-0.111	0.009
ITGAV	0			-0.297			-0.090	0.262
FURIN	0	1.280	-0.730
GFOD2	0	-0.790	0.530
COL6A1	0	0.390	0.000
COL6A2	0	-0.530	0.950
APP	0	0.100	-0.260					0.285
HSD17B12	0	0.180	-0.130		1.013	-0.647
HSD17B12	0	0.180	-0.130				0.799	0.606
SERPINH1	0	-0.090	-0.090			-0.540
SERPINH1	0	-0.090	-0.090	-0.089			0.724	0.375
ITGB1	0	0.390	-0.650				0.101	-0.036
ADAM17	0	0.520	-0.620
PLOD2	0	0.210	0.170	-0.536			0.258	0.338
PRKCA	0	0.750	-0.690				0.349	0.585
PRKCA	0	0.750	-0.690
ITGA5	0	0.320	-0.520				0.858	0.617
ITGA2	0	-0.370	0.660				0.847	0.435
ATP7A	0	-0.210	0.370
ADAM9	0	0.290	-0.290
CRTAP	0	0.070	-0.010				0.714	0.459
DAG1	0	0.210	-0.400
CD151	0	-1.420	2.310				-0.276	0.844
VWA1	0	-1.460	2.160
COL4A1	0	1.810	-1.260					-0.162
AGRN	0	-0.130	0.060				-0.939
LAMA2	0	1.640	-0.040
LAMA2	0	1.640	-0.040			-0.260
NF1	0	1.000	-0.500				0.444	-0.190
SERPINB5	0	0.480	-0.860					-2.992
COL6A6	0	1.100	-0.870

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ACTN1	Phosphorylation	S6	-0.679	0.700	_(ac)MDHYDS(ph)QQTNDYMQPEEDWDRDLLLDPAWEK_
ACTN1	Phosphorylation	Y12		1.047	_(ac)MDHYDSQQTNDY(ph)M(ox)QPEEDWDRDLLLDPAWEK_
ACTN1	Ubiquitylation	K125		1.906	_ALDFIASKGVK(gl)_
ACTN1	Ubiquitylation	K350	0.585		_VQEK(gl)CQLEINFNTLQTK_
ACTN1	Ubiquitylation	K417		0.789	_LDHLAEK(gl)FR_
ACTN1	Ubiquitylation	K592	-0.644	0.678	_EAILAIHK(gl)EAQR_
ACTN1	Ubiquitylation	K760	0.273	1.507	_DAK(gl)GISQEQMQEFR_
ADAM10	Ubiquitylation	K721	-2.406		_LPPPKPLPGTLK(gl)R_
ADAM17	Phosphorylation	S791	-0.594	0.152	_S(ph)FEDLTDHPVTR_
ADAM9	Ubiquitylation	K741	0.269	0.229	_SQTYESDGK(gl)NQANPSRQPGSVPR_
ADAM9	Phosphorylation	S758	-0.375	-0.893	_HVS(ph)PVTPPR_
ADAM9	Phosphorylation	T761	-0.724	-0.397	_HVSPVT(ph)PPREVPIYANR_
ADAM9	Ubiquitylation	K781	-2.213		_FAVPTYAAK(gl)QPQQFPSRPPPPQPK_
APBB2	Phosphorylation	S123	1.522	1.336	_NLS(ph)PTAVINITSEK_
APLP2	Ubiquitylation	K744	-1.204		_HLNK(gl)M(ox)QNHGYENPTYK_
APP	Ubiquitylation	K751	-1.778	-1.280	_HLSK(gl)M(ox)QQNGYENPTYK_
ATP7A	Ubiquitylation	K333	0.029		_K(gl)AIEAVSPGLYR_
BMP7	Ubiquitylation	K178		-0.107	_IYK(gl)DYIR_
CASK	Ubiquitylation	K41	1.029	1.231	_ETGQQFAVK(gl)IVDVAK_
CASK	Ubiquitylation	K60	0.240	0.541	_FTSSPGLSTEDLK(gl)R_
CASK	Phosphorylation	S570		0.125	_TQSS(ph)SCEDLPSTTQPK_
CASK	Phosphorylation	S571	0.134	-0.032	_TQSSS(ph)CEDLPSTTQPK_
CASK	Ubiquitylation	K665	-0.631		_LENSK(gl)NGTAGLIPSPELQEWR_
CASK	Ubiquitylation	K691	1.108		_TK(gl)QEQQASCTWFGK_
CASK	Ubiquitylation	K703	0.627		_TKQEQQASCTWFGK(gl)K_
CASK	Ubiquitylation	K704	0.627		_TKQEQQASCTWFGK(gl)K_
CD151	Ubiquitylation	K186	-1.077	0.207	_VVPDSCCK(gl)TVVALCGQR_
CD151	Ubiquitylation	K249	0.578	1.007	_SLK(gl)LEHY_
CD44	Ubiquitylation	K739	-0.024	0.134	_NLQNVDMK(gl)IGV_
COL6A1	Ubiquitylation	K121	-0.573	0.917	_SSVDAVK(gl)YFGK_
COL6A1	Ubiquitylation	K135		1.185	_GTYTDCAIKK(gl)_
COL6A2	Ubiquitylation	K120		0.009	_ASFIK(gl)NLQGISSFR_
COL6A2	Ubiquitylation	K197		-0.738	_LFAVAPNQNLK(gl)EQGLR_
COL6A2	Ubiquitylation	K851		-0.451	_LGEQNFHK(gl)AR_
COL6A6	Ubiquitylation	K2218	0.074		_EDVLQKAK(gl)_
DAG1	Ubiquitylation	K793		0.843	_LTLEDQATFIK(gl)K_
DAG1	Ubiquitylation	K794	0.899		_LTLEDQATFIKK(gl)_
DAG1	Ubiquitylation	K881	-0.342		_GSRPK(gl)NMTPYR_
DMD	Ubiquitylation	K3317	-0.200	-0.978	_CNICK(gl)ECPIIGFR_
DMD	Phosphorylation	S3623	2.940	0.225	_SDS(ph)SQPMLLR_
DNAJB6	Ubiquitylation	K20	-0.317		_HASPEDIK(gl)K_
DNAJB6	Ubiquitylation	K21	-0.099	-0.377	_HASPEDIKK(gl)AYR_
DNAJB6	Ubiquitylation	K60		-0.122	_QVAEAYEVLSDAK(gl)KR_
DNAJB6	Ubiquitylation	K61	-0.105	-0.122	_QVAEAYEVLSDAKK(gl)R_
DNAJB6	Ubiquitylation	K67	0.497	0.717	_DIYDK(gl)YGK_
DNAJB6	Ubiquitylation	K196	-0.221		_SISTSTK(gl)MVNGR_
DNAJB6	Phosphorylation	S277		0.267	_HAPHCLS(ph)EEEGEQDRPR_
DST	Phosphorylation	S1382	0.207	1.088	_AMVDSQQKS(ph)PVK_
DST	Phosphorylation	S7512		0.381	_RGS(ph)DASDFDISEIQSVCSDVETVPQTHRPTPR_
ERCC2	Ubiquitylation	K268	5.973	1.957	_CQGNLETLQK(gl)TVLR_
ERCC2	Ubiquitylation	K507		-2.034	_GNDQVAISSK(gl)FETR_
FBN2	Ubiquitylation	K385		1.550	_MTK(gl)MQCCCEPGR_
FBN2	Ubiquitylation	K712	0.133	1.523	_STCYGGIKK(gl)_
FBN2	Ubiquitylation	K1582		0.690	_VGNCYLK(gl)FGPR_
FURIN	Ubiquitylation	K789	-1.074	-0.470	_TAFIK(gl)DQSAL_
GFOD2	Ubiquitylation	K271		-1.381	_GADLYGQK(gl)NSATQEELLLR_
HSD17B12	Ubiquitylation	K84	-0.151		_SK(gl)DKLDQVSSEIKEK_
HSD17B12	Ubiquitylation	K261	-0.499	-0.079	_SAIK(gl)TVGLQSR_
ITGA5	Phosphorylation	S127	0.200	0.067	_LLESSLSS(ph)SEGEEPVEYK_
ITGA5	Phosphorylation	S128	-0.087		_LLESSLSSS(ph)EGEEPVEYK_
ITGA6	Ubiquitylation	K1116	0.715		_YIDNLEK(gl)K_
ITGA6	Ubiquitylation	K1117		1.453	_YIDNLEKK(gl)_
ITGAV	Ubiquitylation	K233		0.373	_YDPNVYSIK(gl)YNNQLATR_
ITGAV	Ubiquitylation	K360		0.294	_ASGDFQTTK(gl)LNGFEVFAR_
ITGAV	Ubiquitylation	K923		0.636	_GK(gl)SAILYVK_
ITGB1	Ubiquitylation	K774	0.402		_MNAK(gl)WDTGENPIYK_
ITGB1	Ubiquitylation	K784	-0.172	0.350	_WDTGENPIYK(gl)SAVTTVVNPK_
ITGB1	Ubiquitylation	K794	0.755	0.604	_SAVTTVVNPK(gl)YEGK_
LAMA2	Ubiquitylation	K2038	-0.340		_LQAVK(gl)DKAR_
LAMA2	Ubiquitylation	K2040	-0.340		_LQAVK(gl)DKAR_
LAMA5	Ubiquitylation	K255		1.313	_EFTK(gl)ATNVR_
LAMB1	Ubiquitylation	K182		2.294	_SSDFGK(gl)TWGVYR_
LAMB1	Ubiquitylation	K207		1.047	_YFAYDCEASFPGISTGPMK(gl)K_
LAMB1	Ubiquitylation	K208		1.047	_YFAYDCEASFPGISTGPMK(gl)K_
LAMB1	Ubiquitylation	K239		-0.148	_ALDPAFK(gl)IEDPYSPR_
LAMB1	Ubiquitylation	K253		0.823	_IQNLLK(gl)ITNLR_
LAMB1	Ubiquitylation	K772		2.879	_SVVK(gl)TPMTDVCR_
LAMB2	Ubiquitylation	K494		-0.943	_GTVPGSTPCDPNSGSCYCK(gl)R_
LAMB2	Ubiquitylation	K1769		-0.028	_ALESK(gl)AAQLDGLEAR_
LAMC1	Ubiquitylation	K564		0.404	_YFIAPAK(gl)FLGK_
LOXL1	Ubiquitylation	K493		0.657	_ASFCLEDSTCDFGNLK(gl)R_
MFAP1	Phosphorylation	S81		2.313	_EQEAEPEEQEEDSS(ph)SDPR_
MFAP1	Phosphorylation	S116	-0.066	0.132	_IVEPEVVGES(ph)DSEVEGDAWR_
MFAP1	Phosphorylation	S118		0.211	_KIVEPEVVGESDS(ph)EVEGDAWR_
MFAP1	Phosphorylation	T267	0.250	0.342	_SLAALDALNT(ph)DDENDEEEYEAWK_
MFAP1	Ubiquitylation	K357	0.683		_GAFFMDEDEEVYK(gl)R_
MFAP1	Ubiquitylation	K381		0.342	_VMQVK(gl)NFGR_
MFAP3	Ubiquitylation	K197		0.730	_TEGAEK(gl)LQK_
MFAP3	Ubiquitylation	K200	-0.592	0.302	_LQK(gl)AFEIAK_
MFAP3	Ubiquitylation	K206	-0.236	0.535	_AFEIAK(gl)R_
MFAP3	Ubiquitylation	K221	-0.303	0.316	_TLELAK(gl)VTQFK_
MFAP3	Ubiquitylation	K226	0.081	0.889	_VTQFK(gl)TMEFAR_
MMP15	Phosphorylation	S589		-0.195	_WPDVARPPFNPHGGAEPGADS(ph)AEGDVGDGDGDFGAGVNK_
MMP15	Ubiquitylation	K662	0.150	0.485	_VLLYCK(gl)R_
NF1	Ubiquitylation	K471		0.218	_MAPSLTFKEK(gl)_
NF1	Phosphorylation	S864		-0.458	_SNSGLATYS(ph)PPMGPVSER_
NF1	Phosphorylation	T2514		0.076	_GSEGYLAATYPTVGQT(ph)SPR_
NF1	Phosphorylation	S2515	0.071	0.316	_GSEGYLAATYPTVGQTS(ph)PR_
NF1	Phosphorylation	S2543	0.698	0.655	_S(ph)FDHLISDTK_
NFKB2	Ubiquitylation	K741		-2.393	_GHTPLDLTCSTK(gl)VK_
NFKB2	Ubiquitylation	K743	-0.624		_GHTPLDLTCSTKVK(gl)_
P4HB	Ubiquitylation	K65	-1.515	-0.862	_ALAPEYAK(gl)AAGK_
P4HB	Ubiquitylation	K69		-0.948	_ALAPEYAKAAGK(gl)_
P4HB	Ubiquitylation	K81	-0.179	2.873	_LAK(gl)VDATEESDLAQQYGVR_
P4HB	Ubiquitylation	K103		1.407	_GYPTIK(gl)FFR_
P4HB	Ubiquitylation	K385	-0.726	0.916	_NFEDVAFDEK(gl)K_
P4HB	Ubiquitylation	K386	-0.726	0.916	_NFEDVAFDEK(gl)K_
PLOD3	Ubiquitylation	K215		1.464	_LSLNLDHK(gl)SR_
POMT1	Ubiquitylation	K379		0.088	_DVNNWWIVK(gl)DPRR_
POMT1	Ubiquitylation	K497		0.103	_QLEIVGEK(gl)LSR_
POMT1	Ubiquitylation	K732		-0.512	_SLSPHELK(gl)ALR_
PPIB	Ubiquitylation	K165	0.337		_TAWLDGK(gl)HVVFGK_
PPIB	Ubiquitylation	K195	-0.826		_DKPLK(gl)DVIIADCGK_
PRKCA	Phosphorylation	S10	-0.650	0.036	_(ac)ADVFPGNDS(ph)TASQDVANR_
PRKCA	Phosphorylation	S13	-1.038	0.335	_(ac)ADVFPGNDSTAS(ph)QDVANR_
PRKCA	Phosphorylation	S226	0.693	0.415	_STLNPQWNES(ph)FTFK_
PRKCA	Ubiquitylation	K316	-0.522	-0.535	_LGPAGNK(gl)VISPSEDR_
PTPRS	Ubiquitylation	K1650	-0.595	-1.027	_LLASSK(gl)AHTSR_
PTPRS	Ubiquitylation	K1665	-0.790		_FISANLPCNK(gl)FK_
SDC2	Ubiquitylation	K193	-0.696	-0.929	_KPSSAAYQK(gl)APTK_
SDC2	Ubiquitylation	K197	-0.160	0.647	_APTK(gl)EFYA_
SDC4	Ubiquitylation	K190	-0.979		_K(gl)APTNEFYA_
SERPINH1	Ubiquitylation	K39	-0.571	-0.365	_LSPK(gl)AATLAER_
SERPINH1	Ubiquitylation	K287		0.490	_LLTK(gl)EQLK_
SMARCA4	Ubiquitylation	K357	-0.934		_ITPIQK(gl)PR_
SMARCA4	Ubiquitylation	K405	0.109	1.148	_ATIELK(gl)ALR_
SMARCA4	Ubiquitylation	K437	-0.317		_DTALETALNAK(gl)AYKR_
SMARCA4	Ubiquitylation	K455	0.225		_ITEK(gl)LEK_
SMARCA4	Ubiquitylation	K496		0.923	_SVTGK(gl)IQK_
SMARCA4	Phosphorylation	S677	-0.880	-0.324	_KAENAEGQTPAIGPDGEPLDETSQMS(ph)DLPVK_
SMARCA4	Ubiquitylation	K1283	0.125		_ILAAAK(gl)YK_
SMARCA4	Phosphorylation	S1413	-0.265	0.515	_EVDYSDS(ph)LTEK_
SMARCA4	Phosphorylation	S1486	-0.713	-0.935	_LS(ph)PNPPNLTK_
TGFB1	Ubiquitylation	K50		-0.557	_GQILSK(gl)LR_
TGFB3	Ubiquitylation	K50		-0.557	_GQILSK(gl)LR_
TIMP1	Ubiquitylation	K70	1.253	-0.548	_MYK(gl)GFQALGDAADIR_
TNXB	Phosphorylation	S2218	0.168	0.267	_GEES(ph)EVTVGGLEPGR_
VCAN	Ubiquitylation	K98		2.161	_IGQDYK(gl)GR_
VCAN	Ubiquitylation	K347		3.178	_FDAYCFK(gl)R_
VCAN	Phosphorylation	S2130	0.600	0.798	_QEIESETTS(ph)EEQIQEEK_
VWA1	Ubiquitylation	K418		-2.830	_ESALSAK(gl)ACTPDGPRPR_