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Query: COL6A1

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
COL6A1 0 0.612 0.390 0.000

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
COL6A1 Ubiquitylation K135 1.185 _GTYTDCAIKK(gl)_
COL6A1 Ubiquitylation K121 -0.573 0.917 _SSVDAVK(gl)YFGK_

Background Information for COL6A1:


Pubmed-COL6A1 »
Uniprot-COL6A1 »
Biogrid-COL6A1 »
ProteomicsDB-COL6A1 »

Tumorportal-COL6A1 »
COSMIC-COL6A1 »
GenomeRNAi-COL6A1 »
Genecards-COL6A1


Protein-protein Interactions for COL6A1
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait C1QTNF9 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait COL9A1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait COLEC11 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait DEFA1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait INSL5 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait LYPD1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait LYZL1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait MMP2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait MMP9 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait OS9 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait PLA2G10 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait PLOD1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait PTPRK Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait RTBDN Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait WNT4 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait WNT7A Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in COL6A1
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Collagen IPR008160 0.06
Category members VWF_A IPR002035 0


Protein complexes (CORUM database) featuring COL6A1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring COL6A1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005576 extracellular region Database 10.9
Category members DDR Literature pubmedid:19647519 Paulsen et al., 2009 siRNA screen for g-H2A.x phosphorylation 3.6
Category members GO Category GO:0043234 protein complex Database 2.73
Category members Pathway Pathway_595 KEGG_FOCAL_ADHESION 0 1.08
Category members Pathway Pathway_673 REACTOME_AXON_GUIDANCE 0 1.06
Category members GO Category GO:0005765 lysosomal membrane Database 0.82
Category members GO Category GO:0031012 extracellular matrix Database 0.45
Category members Pathway Pathway_247 REACTOME_SIGNALING_BY_PDGF 0 0.4
Category members GO Category GO:0042383 sarcolemma Database 0.36
Category members Pathway Pathway_42 REACTOME_DEVELOPMENTAL_BIOLOGY 0 0.32
Category members GO Category GO:0030198 extracellular matrix organization Database 0.26
Category members GO Category GO:0030574 collagen catabolic process Database 0.2
Category members GO Category GO:0007411 axon guidance Database 0.13
Category members GO Category GO:0022617 extracellular matrix disassembly Database 0.13
Category members Pathway Pathway_415 REACTOME_EXTRACELLULAR_MATRIX_ORGANIZATION 0 0.09
Category members Pathway Pathway_1009 REACTOME_NCAM1_INTERACTIONS 0 0.04
Category members Pathway Pathway_521 PID_AVB3_INTEGRIN_PATHWAY 0 0.03
Category members Pathway Pathway_1010 REACTOME_NCAM_SIGNALING_FOR_NEURITE_OUT_GROWTH 0 0
Category members Pathway Pathway_1027 PID_INTEGRIN1_PATHWAY 0 0
Category members Pathway Pathway_414 REACTOME_COLLAGEN_FORMATION 0 0
Category members Pathway Pathway_476 PID_SYNDECAN_1_PATHWAY 0 0
Category members Pathway Pathway_922 KEGG_ECM_RECEPTOR_INTERACTION 0 0
Category members Disease phenotype BETHLEM_MYOPATHY BETHLEM MYOPATHY Database 0
Category members Disease phenotype Congenital_muscular_dystrophy_Ullrich_type Congenital muscular dystrophy Ullrich type Database 0
Category members Disease phenotype ULLRICH_CONGENITAL_MUSCULAR_DYSTROPHY ULLRICH CONGENITAL MUSCULAR DYSTROPHY Database 0
Category members GO Category GO:0005589 collagen type VI Database 0
Category members GO Category GO:0005788 endoplasmic reticulum lumen Database 0
Category members GO Category GO:0007155 cell adhesion Database 0
Category members GO Category GO:0048407 platelet-derived growth factor binding Database 0
Category members GO Category GO:0070208 protein heterotrimerization Database 0
Category members GO Category GO:0071230 cellular response to amino acid stimulus Database 0


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