RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
HSP90B1	2	0.100	0.120	0.724	1.982	-1.206	0.484	0.477
PDIA3	2	-2.160	3.830	0.411	2.714	-0.864	0.952	0.794
PDIA3	2	-2.160	3.830	0.189	2.142	-1.800
P4HB	2	-1.530	2.950	0.990	0.813	0.711	0.548	0.459
ERP44	1	-2.430	5.120	-0.191	0.759	-0.035	-0.190	0.119
HSPA5	1	-0.670	0.310	-0.181	-0.208	0.339	-0.702	-0.192
DNAJC10	1	-1.750	3.210	0.769	-0.495	-0.158	0.513	0.706
ERP29	1	-0.340	0.850				0.012	0.270
P3H1	1	-2.060	3.660			-0.329	0.349	0.449
RCN2	1	-0.800	1.070	1.492		-0.194		0.637
CLN6	1	0.190	-0.280
PRKCSH	1	0.550	0.060				0.459	0.419
COLGALT1	1	-1.610	2.510				0.052	0.252
PDIA4	1	-0.040	-0.150	0.422			0.500	0.333
PPIB	1	-0.320	1.070		1.818	-1.512	0.460	0.205
COL18A1	1	-1.230	1.530				1.871	0.304
PDGFA	1	0.190	-0.340		-2.109	1.885
RCN1	0	0.120	-0.260	0.733			0.693
PDIA5	0	-1.000	1.120				0.907	0.753
ERLEC1	0	-1.040	2.100				-0.106	0.245
P4HA2	0	0.360	0.270
APOB	0	0.130	0.050				-4.359	0.702
EDEM2	0	-0.410	0.000
EDEM2	0	-0.410	0.000
GANAB	0	-1.570	1.920	0.976	1.372	-0.855	0.380	0.462
GANAB	0	-1.570	1.920	-0.067
DNAJB11	0	1.090	-0.570
DNAJB11	0	1.090	-0.570	-0.681	-0.327	0.470	-0.206	-0.384
P3H2	0	-0.270	0.450			-0.329	0.349	0.449
FOXRED2	0	0.510	-0.310
DNAJC3	0	0.690	-0.440				-0.823
UGGT2	0	-0.280	0.250					0.949
GBF1	0	0.620	-0.640				-0.785	-0.409
WNT5A	0
EDEM3	0	-0.320	0.890
TXNDC12	0	0.530	-0.510				-0.710
APOA1	0	0.850	-0.420				-3.959
P4HA1	0	0.470	-0.420	0.858			0.668	-0.158
CANX	0	0.090	-0.410	0.234	-0.021	-1.207	-0.098	-0.313
SDF2L1	0	1.250	-0.640	-0.106			0.933
COL4A2	0	-0.170	0.350				-0.692	-0.297
OS9	0	0.740	0.160				0.130	0.161
UGGT1	0	0.180	-0.910	0.129	-1.115	-0.232	0.607	0.857
TOR1A	0	-0.270	-0.250
SLC27A2	0	0.080	-0.710				0.200	1.382
MBTPS1	0	0.820	-0.630
COL6A1	0	0.390	0.000
COL6A2	0	-0.530	0.950
PDIA6	0	1.060	-0.820	0.663	1.438	-1.234	0.073	0.167
SERPINH1	0	-0.090	-0.090			-0.540
SERPINH1	0	-0.090	-0.090	-0.089			0.724	0.375
POGLUT1	0	0.020	0.000
CERCAM	0	1.300	-0.820
CRTAP	0	0.070	-0.010				0.714	0.459
KDELC2	0	-0.810	1.110
CALR	0	-1.300	2.220				0.480	0.054
GAS6	0	0.020	0.220		-1.517	-0.502
COL4A1	0	1.810	-1.260					-0.162
ERO1L	0	-0.250	-0.050				1.365	-0.072
TXNDC5	0	-0.390	0.840	0.683	1.407	0.087	0.669	0.412

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
CALR	Ubiquitylation	K48		0.703	_SDFGK(gl)FVLSSGK_
CALR	Ubiquitylation	K153	-0.924	0.619	_GK(gl)NVLINK_
CALR	Ubiquitylation	K159	-1.004	0.381	_NVLINK(gl)DIR_
CANX	Ubiquitylation	K96	-1.324		_VTYK(gl)APVPTGEVYFADSFDR_
CANX	Ubiquitylation	K122	0.021	0.828	_GTLSGWILSK(gl)AK_
CANX	Ubiquitylation	K124	-0.479		_GTLSGWILSKAK(gl)_
CANX	Ubiquitylation	K153	-0.762		_LPGDK(gl)GLVLMSR_
CANX	Ubiquitylation	K252	0.015		_TGIYEEK(gl)HAK_
CANX	Ubiquitylation	K268		1.422	_TYFTDK(gl)K_
CANX	Ubiquitylation	K415	-1.726		_CESAPGCGVWQRPVIDNPNYK(gl)GK_
CANX	Ubiquitylation	K417	-0.679		_PVIDNPNYKGK(gl)_
CANX	Ubiquitylation	K494	-0.002	1.403	_IVDDWANDGWGLKK(gl)_
CANX	Phosphorylation	S589	0.479	0.421	_S(ph)DAEEDGGTVSQEEEDR_
CANX	Phosphorylation	T597	0.469	0.188	_SDAEEDGGT(ph)VSQEEEDRKPK_
CANX	Phosphorylation	S599	0.395	0.352	_SDAEEDGGTVS(ph)QEEEDR_
CANX	Phosphorylation	S618	0.442	0.320	_AEEDEILNRS(ph)PR_
CERCAM	Ubiquitylation	K200		-0.325	_TAEYFPTK(gl)NR_
CLN6	Phosphorylation	S63	1.677	1.381	_HGS(ph)VSADEAAR_
COL6A1	Ubiquitylation	K121	-0.573	0.917	_SSVDAVK(gl)YFGK_
COL6A1	Ubiquitylation	K135		1.185	_GTYTDCAIKK(gl)_
COL6A2	Ubiquitylation	K120		0.009	_ASFIK(gl)NLQGISSFR_
COL6A2	Ubiquitylation	K197		-0.738	_LFAVAPNQNLK(gl)EQGLR_
COL6A2	Ubiquitylation	K851		-0.451	_LGEQNFHK(gl)AR_
DNAJB11	Ubiquitylation	K43	-0.110		_SASIKDIKK(gl)_
DNAJB11	Ubiquitylation	K54	-1.500		_LQELEEFK(gl)ER_
DNAJB11	Ubiquitylation	K302	-0.968	-0.252	_K(gl)GEGLPNFDNNNIK_
DNAJC10	Ubiquitylation	K737	0.024	0.405	_VDCQAYAQTCQK(gl)AGIR_
EDEM2	Ubiquitylation	K389		-0.847	_SLPLLLK(gl)_
EDEM2	Ubiquitylation	K509		-0.471	_EFYSLK(gl)R_
EDEM3	Ubiquitylation	K435		-1.055	_TLIENLNK(gl)YAR_
EDEM3	Ubiquitylation	K447		0.123	_VPCGFAAMK(gl)DVR_
ERP29	Ubiquitylation	K182	0.923	1.532	_QALLK(gl)QGQDNLSSVK_
FOXRED2	Ubiquitylation	K83		-0.315	_LISINK(gl)R_
FOXRED2	Ubiquitylation	K88	-1.685	-0.406	_YTGK(gl)ANAEFNLR_
FOXRED2	Ubiquitylation	K362		-1.459	_LNSGNAFGK(gl)K_
FOXRED2	Ubiquitylation	K610		-0.315	_QK(gl)LPPFCQQGYLR_
GANAB	Ubiquitylation	K99	0.296	1.368	_TCEESSFCK(gl)R_
GANAB	Ubiquitylation	K320	-0.200	0.127	_LK(gl)VTEGGEPYR_
GANAB	Ubiquitylation	K542		0.522	_NLGLYVK(gl)TR_
GBF1	Ubiquitylation	K212	0.865	1.415	_NYVGTNMK(gl)K_
GBF1	Ubiquitylation	K606	0.112		_VLNSLTQQEKK(gl)_
GBF1	Ubiquitylation	K715	-0.719	1.164	_LLITGTEQFNQKPK(gl)_
GBF1	Phosphorylation	S1298	-0.288	-0.023	_ADAPDAGAQS(ph)DSELPSYHQNDVSLDR_
GBF1	Phosphorylation	S1300	-0.275	-0.056	_ADAPDAGAQSDS(ph)ELPSYHQNDVSLDR_
GBF1	Phosphorylation	T1317		0.742	_GYT(ph)SDSEVYTDHGRPGK_
GBF1	Phosphorylation	S1318	0.417	0.541	_GYTS(ph)DSEVYTDHGRPGK_
GBF1	Ubiquitylation	K1529		-0.652	_HLETGGQK(gl)IEADSR_
GBF1	Phosphorylation	S1773		-1.189	_TPGHPPPPEIPSELGACDFEKPES(ph)PR_
HSP90B1	Ubiquitylation	K95	0.097	1.380	_LIINSLYK(gl)NK_
HSP90B1	Ubiquitylation	K97	-0.155	1.541	_NK(gl)EIFLR_
HSP90B1	Ubiquitylation	K161	0.157	0.544	_EELVK(gl)NLGTIAK_
HSP90B1	Ubiquitylation	K168		1.363	_NLGTIAK(gl)SGTSEFLNK_
HSP90B1	Phosphorylation	S306	-0.709	0.213	_TETVEEPMEEEEAAKEEKEES(ph)DDEAAVEEEEEEK_
HSP90B1	Ubiquitylation	K404	-0.189	1.394	_GLFDEYGSK(gl)K_
HSP90B1	Ubiquitylation	K405	-0.189	1.394	_GLFDEYGSK(gl)K_
HSP90B1	Ubiquitylation	K455	0.816	0.384	_ETLQQHK(gl)LLK_
HSP90B1	Ubiquitylation	K593	-0.763	0.376	_FQNVAK(gl)EGVK_
HSP90B1	Ubiquitylation	K663	-0.272		_IMK(gl)AQAYQTGK_
HSP90B1	Ubiquitylation	K671	-0.264	0.676	_AQAYQTGK(gl)DISTNYYASQK_
HSP90B1	Ubiquitylation	K682	0.380	1.163	_DISTNYYASQK(gl)K_
HSP90B1	Ubiquitylation	K683	0.380	1.163	_DISTNYYASQK(gl)K_
HSPA5	Ubiquitylation	K81		-0.455	_LIGDAAK(gl)NQLTSNPENTVFDAK(gl)R_
HSPA5	Ubiquitylation	K96	-0.392	-0.109	_NQLTSNPENTVFDAK(gl)R_
HSPA5	Ubiquitylation	K118		0.783	_FLPFK(gl)VVEK_
HSPA5	Ubiquitylation	K340		0.743	_STMK(gl)PVQK_
HSPA5	Ubiquitylation	K352	-0.469	0.822	_VLEDSDLK(gl)K_
HSPA5	Ubiquitylation	K353	-0.469		_VLEDSDLK(gl)K_
HSPA5	Ubiquitylation	K447		3.097	_NTVVPTKK(gl)_
HSPA5	Ubiquitylation	K523	-0.120	0.631	_NK(gl)ITITNDQNR_
KDELC2	Ubiquitylation	K159		-1.098	_TLSCPTK(gl)EPQIAK_
MBTPS1	Ubiquitylation	K124		0.229	_AGLLTLEDHPNIK(gl)R_
OS9	Ubiquitylation	K113	-1.052	0.213	_DAPCLLK(gl)TK_
OS9	Ubiquitylation	K530		0.012	_SEVK(gl)AGMER_
OS9	Ubiquitylation	K587		-0.426	_QSPELVK(gl)K_
OS9	Ubiquitylation	K636		-0.448	_LGGPNQDLTVLEMK(gl)R_
OS9	Ubiquitylation	K643		-0.607	_ENPQLK(gl)QIEGLVK_
P4HA2	Ubiquitylation	K300		-0.417	_GEGVK(gl)LTPR_
P4HB	Ubiquitylation	K65	-1.515	-0.862	_ALAPEYAK(gl)AAGK_
P4HB	Ubiquitylation	K69		-0.948	_ALAPEYAKAAGK(gl)_
P4HB	Ubiquitylation	K81	-0.179	2.873	_LAK(gl)VDATEESDLAQQYGVR_
P4HB	Ubiquitylation	K103		1.407	_GYPTIK(gl)FFR_
P4HB	Ubiquitylation	K385	-0.726	0.916	_NFEDVAFDEK(gl)K_
P4HB	Ubiquitylation	K386	-0.726	0.916	_NFEDVAFDEK(gl)K_
PDIA3	Ubiquitylation	K75		-0.105	_LK(gl)GIVPLAK_
PDIA3	Ubiquitylation	K94	-0.012	0.658	_VDCTANTNTCNK(gl)YGVSGYPTLK_
PDIA3	Ubiquitylation	K130		0.775	_TADGIVSHLKK(gl)_
PDIA3	Ubiquitylation	K226	-0.163	0.525	_TVAYTEQK(gl)MTSGK_
PDIA3	Ubiquitylation	K362	-0.242		_FLQDYFDGNLK(gl)R_
PDIA4	Ubiquitylation	K141		2.398	_FDVSGYPTIK(gl)ILK_
PDIA4	Ubiquitylation	K163		0.009	_TQEEIVAK(gl)VR_
PDIA4	Ubiquitylation	K245	0.936	1.890	_VDATAETDLAK(gl)R_
PDIA6	Ubiquitylation	K289		0.793	_GFPTIK(gl)IFQK_
PDIA6	Phosphorylation	S476	-0.194	0.149	_EPWDGRDGELPVEDDIDLS(ph)DVELDDLGKDEL_
POGLUT1	Ubiquitylation	K93	0.896		_LGTHYQITK(gl)NR_
PPIB	Ubiquitylation	K165	0.337		_TAWLDGK(gl)HVVFGK_
PPIB	Ubiquitylation	K195	-0.826		_DKPLK(gl)DVIIADCGK_
PRKCSH	Ubiquitylation	K383	1.564	0.883	_NK(gl)FEEAER_
RCN2	Ubiquitylation	K72	0.775		_LQAIIKK(gl)_
RCN2	Ubiquitylation	K156		2.130	_EFAICKK(gl)_
SERPINH1	Ubiquitylation	K39	-0.571	-0.365	_LSPK(gl)AATLAER_
SERPINH1	Ubiquitylation	K287		0.490	_LLTK(gl)EQLK_
SLC27A2	Ubiquitylation	K62		1.069	_AFLEK(gl)AR_
SLC27A2	Ubiquitylation	K390		-0.901	_VNYLQKK(gl)_
SLC27A2	Ubiquitylation	K419	-0.252	0.124	_VPK(gl)GEVGLLVCK_
TOR1A	Ubiquitylation	K349		-1.261	_VFSDK(gl)GCK_
UGGT1	Ubiquitylation	K356		0.816	_DLSQNFPTK(gl)AR_
UGGT2	Ubiquitylation	K782		-0.470	_LGIIYNPTSK(gl)INEENTAISR_
WNT5A	Ubiquitylation	K268		-0.304	_VGDALK(gl)EK_