RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
PSMD4	3	0.220	-0.300	-0.195
PSMD4	3	0.220	-0.300			-0.501	3.498	0.910
INTS6	2	-0.760	1.680		1.836	2.122		-0.976
VWA9	2	0.560	-0.730	-1.669	1.574	1.911	-0.425	-0.252
SEC23A	1	-1.970	3.860	0.314			0.139	-0.515
TTN	1	2.130	-1.190		0.133	0.277	0.244	0.213
CPNE7	1	-1.480	2.560	-0.106	0.910	-0.970	0.268	-0.099
CPNE7	1	-1.480	2.560
CACNA2D2	0	-1.100	0.810				-0.479	0.445
XRCC5	0	1.940	-0.800	0.205	-0.587	0.234	-0.176	0.162
CPNE3	0	-0.230	-0.040	-0.106	0.910	-0.970	0.268	-0.099
COCH	0	0.370	-0.760
CPNE6	0	-0.470	0.470	-0.106	0.910	-0.970	0.268	-0.099
SEC23B	0	-0.860	0.650				-0.294	-0.827
VWA8	0	-0.380	0.630		-0.103	-0.630	0.288	0.085
BABAM1	0
MDN1	0	0.760	-0.410	-0.386	0.101	0.229	0.029	0.186
SEC24A	0	0.060	-0.210				0.162	-0.582
ITGB6	0	-0.450	0.870				1.047	0.718
TROVE2	0	1.130	-0.720	0.477			0.004	-0.157
MATN4	0	0.970	-0.430		-0.245	-0.120
CPNE5	0	-0.420	-0.010	-0.106	0.910	-0.970	0.268	-0.099
CPNE5	0	-0.420	-0.010				-0.663	-0.182
SEC24B	0	-0.430	0.680				-0.093	-0.387
CPNE8	0	-0.680	0.540	-0.106	0.910	-0.970	0.268	-0.099
CPNE8	0	-0.680	0.540				-0.663	-0.182
CPNE2	0	-0.750	0.840	-0.106	0.910	-0.970	0.268	-0.099
COL6A1	0	0.390	0.000
COL6A2	0	-0.530	0.950
CPNE9	0	-0.440	0.670				-0.663	-0.182
ITGB1	0	0.390	-0.650				0.101	-0.036
CACNA2D1	0	-0.440	1.350				-0.479	0.445
ANTXR2	0	1.250	-0.780
ITGA2	0	-0.370	0.660				0.847	0.435
ANTXR1	0	0.970	-0.800
SEC24C	0	0.420	-0.360					-0.393
VWA1	0	-1.460	2.160
CPNE4	0	-1.330	2.190	-0.106	0.910	-0.970	0.268	-0.099
XRCC6	0	0.960	-0.800
XRCC6	0	0.960	-0.800	-0.089	-0.758	0.145	0.033	0.140
COL6A6	0	1.100	-0.870
ITGA1	0	-0.750	1.480				0.650	0.069
CPNE1	0	0.620	-0.830	-0.689	0.354	-0.510	0.418	0.452

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ANTXR1	Ubiquitylation	K401	-0.267		_WGEK(gl)GSTEEGAKLEK_
ANTXR1	Ubiquitylation	K409	0.240	1.491	_GSTEEGAK(gl)LEK_
ANTXR1	Ubiquitylation	K412	0.106	0.222	_GSTEEGAKLEK(gl)AK_
ANTXR1	Ubiquitylation	K419	-0.951		_VK(gl)MPEQEYEFPEPR_
ANTXR2	Ubiquitylation	K399	0.757		_WGDK(gl)GSTEEGAR_
ANTXR2	Ubiquitylation	K449	0.060	-0.198	_WYTPIK(gl)GR_
BABAM1	Phosphorylation	S7	-0.774	-0.248	_M(ox)EVAEPS(ph)S(ph)PTEEEEEEEEHSAEPR_
BABAM1	Phosphorylation	S8	-0.593	-0.317	_(ac)MEVAEPSS(ph)PTEEEEEEEEHSAEPRPR_
BABAM1	Phosphorylation	T10	-0.435	-0.371	_(ac)MEVAEPSSPT(ph)EEEEEEEEHSAEPR_
BABAM1	Phosphorylation	S49	0.284	0.198	_S(ph)EGEGEAASADDGSLNTSGAGPK_
BABAM1	Phosphorylation	T65	-0.439		_SEGEGEAASADDGSLNT(ph)SGAGPK_
BABAM1	Phosphorylation	S66	0.479	-0.294	_SEGEGEAASADDGSLNTS(ph)GAGPK_
BABAM1	Ubiquitylation	K117	-0.415	-0.148	_LESFNGSK(gl)TNALNVSQK_
COCH	Ubiquitylation	K344		0.392	_YVK(gl)PLVQK_
COL6A1	Ubiquitylation	K121	-0.573	0.917	_SSVDAVK(gl)YFGK_
COL6A1	Ubiquitylation	K135		1.185	_GTYTDCAIKK(gl)_
COL6A2	Ubiquitylation	K120		0.009	_ASFIK(gl)NLQGISSFR_
COL6A2	Ubiquitylation	K197		-0.738	_LFAVAPNQNLK(gl)EQGLR_
COL6A2	Ubiquitylation	K851		-0.451	_LGEQNFHK(gl)AR_
COL6A6	Ubiquitylation	K2218	0.074		_EDVLQKAK(gl)_
CPNE1	Ubiquitylation	K65	0.097	-0.436	_NCSSPEFSK(gl)TLQLEYR_
CPNE1	Ubiquitylation	K78	0.588	0.915	_FETVQK(gl)LR_
CPNE1	Ubiquitylation	K140		1.282	_GTITVSAQELK(gl)DNR_
CPNE1	Ubiquitylation	K195		-0.281	_NNLNPTWK(gl)R_
CPNE1	Ubiquitylation	K261	0.506	0.692	_SYK(gl)NSGTIR_
CPNE2	Ubiquitylation	K158		1.150	_DLFGK(gl)SDPYLEFHK_
CPNE2	Phosphorylation	S242	0.530	0.156	_S(ph)SPVEFECINEK_
CPNE2	Phosphorylation	S243	0.530	0.156	_S(ph)SPVEFECINEK_
CPNE2	Ubiquitylation	K253	-0.241	-0.231	_SSPVEFECINEK(gl)KR_
CPNE2	Ubiquitylation	K254	-0.241		_SSPVEFECINEK(gl)KR_
CPNE2	Ubiquitylation	K262	0.184		_SYK(gl)NSGVISVK_
CPNE2	Ubiquitylation	K533	-0.918	-0.341	_LLPPKNPATK(gl)QQK_
CPNE3	Ubiquitylation	K158		1.150	_DLFGK(gl)SDPYLEFHK_
CPNE3	Phosphorylation	S242	0.530	0.156	_S(ph)SPVEFECINEK_
CPNE3	Phosphorylation	S243	0.530	0.156	_S(ph)SPVEFECINEK_
CPNE3	Ubiquitylation	K253	-0.241	-0.231	_SSPVEFECINEK(gl)KR_
CPNE3	Ubiquitylation	K254	-0.241		_SSPVEFECINEK(gl)KR_
CPNE3	Ubiquitylation	K262	0.184		_SYK(gl)NSGVISVK_
CPNE3	Ubiquitylation	K533	-0.918	-0.341	_LLPPKNPATK(gl)QQK_
CPNE4	Ubiquitylation	K158		1.150	_DLFGK(gl)SDPYLEFHK_
CPNE4	Phosphorylation	S242	0.530	0.156	_S(ph)SPVEFECINEK_
CPNE4	Phosphorylation	S243	0.530	0.156	_S(ph)SPVEFECINEK_
CPNE4	Ubiquitylation	K253	-0.241	-0.231	_SSPVEFECINEK(gl)KR_
CPNE4	Ubiquitylation	K254	-0.241		_SSPVEFECINEK(gl)KR_
CPNE4	Ubiquitylation	K262	0.184		_SYK(gl)NSGVISVK_
CPNE4	Ubiquitylation	K533	-0.918	-0.341	_LLPPKNPATK(gl)QQK_
CPNE5	Ubiquitylation	K158		1.150	_DLFGK(gl)SDPYLEFHK_
CPNE5	Phosphorylation	S242	0.530	0.156	_S(ph)SPVEFECINEK_
CPNE5	Phosphorylation	S243	0.530	0.156	_S(ph)SPVEFECINEK_
CPNE5	Ubiquitylation	K253	-0.241	-0.231	_SSPVEFECINEK(gl)KR_
CPNE5	Ubiquitylation	K254	-0.241		_SSPVEFECINEK(gl)KR_
CPNE5	Ubiquitylation	K262	0.184		_SYK(gl)NSGVISVK_
CPNE5	Ubiquitylation	K533	-0.918	-0.341	_LLPPKNPATK(gl)QQK_
CPNE6	Ubiquitylation	K158		1.150	_DLFGK(gl)SDPYLEFHK_
CPNE6	Phosphorylation	S242	0.530	0.156	_S(ph)SPVEFECINEK_
CPNE6	Phosphorylation	S243	0.530	0.156	_S(ph)SPVEFECINEK_
CPNE6	Ubiquitylation	K253	-0.241	-0.231	_SSPVEFECINEK(gl)KR_
CPNE6	Ubiquitylation	K254	-0.241		_SSPVEFECINEK(gl)KR_
CPNE6	Ubiquitylation	K262	0.184		_SYK(gl)NSGVISVK_
CPNE6	Ubiquitylation	K533	-0.918	-0.341	_LLPPKNPATK(gl)QQK_
CPNE7	Ubiquitylation	K158		1.150	_DLFGK(gl)SDPYLEFHK_
CPNE7	Ubiquitylation	K208		-0.184	_VTRPLLLK(gl)_
CPNE7	Phosphorylation	S242	0.530	0.156	_S(ph)SPVEFECINEK_
CPNE7	Phosphorylation	S243	0.530	0.156	_S(ph)SPVEFECINEK_
CPNE7	Ubiquitylation	K253	-0.241	-0.231	_SSPVEFECINEK(gl)KR_
CPNE7	Ubiquitylation	K254	-0.241		_SSPVEFECINEK(gl)KR_
CPNE7	Ubiquitylation	K262	0.184		_SYK(gl)NSGVISVK_
CPNE7	Ubiquitylation	K533	-0.918	-0.341	_LLPPKNPATK(gl)QQK_
CPNE8	Ubiquitylation	K158		1.150	_DLFGK(gl)SDPYLEFHK_
CPNE8	Phosphorylation	S242	0.530	0.156	_S(ph)SPVEFECINEK_
CPNE8	Phosphorylation	S243	0.530	0.156	_S(ph)SPVEFECINEK_
CPNE8	Ubiquitylation	K253	-0.241	-0.231	_SSPVEFECINEK(gl)KR_
CPNE8	Ubiquitylation	K254	-0.241		_SSPVEFECINEK(gl)KR_
CPNE8	Ubiquitylation	K262	0.184		_SYK(gl)NSGVISVK_
CPNE8	Ubiquitylation	K533	-0.918	-0.341	_LLPPKNPATK(gl)QQK_
ITGB1	Ubiquitylation	K774	0.402		_MNAK(gl)WDTGENPIYK_
ITGB1	Ubiquitylation	K784	-0.172	0.350	_WDTGENPIYK(gl)SAVTTVVNPK_
ITGB1	Ubiquitylation	K794	0.755	0.604	_SAVTTVVNPK(gl)YEGK_
MDN1	Ubiquitylation	K19		-0.287	_LIAAK(gl)NEK_
MDN1	Ubiquitylation	K33		-0.035	_FLAK(gl)QVWTPQDR_
MDN1	Ubiquitylation	K350		-1.164	_TK(gl)PPQLLK_
MDN1	Ubiquitylation	K366		0.195	_VQLGDQTDSK(gl)MLLGMYR_
MDN1	Ubiquitylation	K600		-1.233	_MAEVIGSK(gl)LNISR_
MDN1	Ubiquitylation	K891		-0.938	_LFACMNPATDVGK(gl)R_
MDN1	Ubiquitylation	K1024		-2.534	_SLLK(gl)QPIPEPK_
MDN1	Ubiquitylation	K1514		-1.438	_GSPEDKDSEIELLTAGKK(gl)_
MDN1	Ubiquitylation	K1529		-1.319	_ILATMNPGGDFGK(gl)K_
MDN1	Ubiquitylation	K1530		-1.319	_ILATMNPGGDFGK(gl)K_
MDN1	Ubiquitylation	K1746	0.030		_LK(gl)KPILLEGSPGVGK_
MDN1	Ubiquitylation	K1747	0.030		_LK(gl)KPILLEGSPGVGK_
MDN1	Ubiquitylation	K1863		-1.113	_TK(gl)IFGCQNPFR_
MDN1	Ubiquitylation	K2471		-0.474	_MSMK(gl)TSSWTR_
MDN1	Ubiquitylation	K3313		-1.031	_LDNLTCHLLKK(gl)_
MDN1	Ubiquitylation	K3545	0.744	-0.412	_IAQEK(gl)AEQESGLYR_
MDN1	Phosphorylation	S4538	0.436	0.524	_AEENTDQAS(ph)PQEDYAGFER_
MDN1	Phosphorylation	T4898		-0.733	_VPEPEALDLPDDLNLDSEDKNGGEDT(ph)DNEEGEEENPLEIK_
MDN1	Phosphorylation	S5015	0.186	-1.308	_DKEADEEGGENGPADQGFQPQEEEEREDS(ph)DTEEQVPEALER_
MDN1	Phosphorylation	T5017	0.186		_DKEADEEGGENGPADQGFQPQEEEEREDS(ph)DTEEQVPEALER_
PSMD4	Ubiquitylation	K40	0.326	0.870	_LQAQQDAVNIVCHSK(gl)TR_
PSMD4	Ubiquitylation	K74	-0.577	0.266	_ILSK(gl)LHTVQPK_
PSMD4	Ubiquitylation	K83	0.392	0.481	_GK(gl)ITFCTGIR_
PSMD4	Ubiquitylation	K122	-1.058		_IIAFVGSPVEDNEK(gl)DLVK_
PSMD4	Ubiquitylation	K126	-0.079		_DLVK(gl)LAK_
PSMD4	Ubiquitylation	K135		0.627	_EK(gl)VNVDIINFGEEEVNTEK_
PSMD4	Phosphorylation	S269	4.542	4.504	_M(ox)TIS(ph)QQEFGR_
PSMD4	Ubiquitylation	K368	0.953	0.502	_NAM(ox)GSLASQATK(gl)DGKK_
SEC23B	Ubiquitylation	K208		-0.684	_QIQDMLGLTK(gl)PAMPMQQAR_
SEC23B	Ubiquitylation	K260		-1.638	_DPWPVTQGK(gl)RPLR_
SEC23B	Ubiquitylation	K320	-0.124	-0.120	_SWHDIEK(gl)DNAR_
SEC23B	Ubiquitylation	K331	-0.911	0.319	_ATK(gl)HYEM(ox)LANR_
SEC23B	Ubiquitylation	K558		-1.187	_LCQK(gl)FGQYNK(gl)EDPTSFR_
SEC23B	Ubiquitylation	K564	-0.583	-0.895	_LCQK(gl)FGQYNK(gl)EDPTSFR_
SEC23B	Ubiquitylation	K671		-0.713	_K(gl)AGYQDMPEYENFK_
SEC24B	Phosphorylation	S1254		-0.049	_DSRPLS(ph)PILHIVKDESPAK_
SEC24C	Ubiquitylation	K956	-2.127	-1.632	_LLPLTK(gl)SPVESTTEPPAVR_
TROVE2	Ubiquitylation	K140	0.863		_ESMK(gl)CGMWGR_
TROVE2	Ubiquitylation	K234		0.305	_YLEAVEK(gl)VKR_
TROVE2	Ubiquitylation	K312	0.209	0.080	_LCNEK(gl)LLK_
TROVE2	Ubiquitylation	K342	0.120		_LK(gl)WRPDEEILK_
TTN	Ubiquitylation	K27327	-0.283	0.183	_AGEVLK(gl)INADIAGR_
VWA1	Ubiquitylation	K418		-2.830	_ESALSAK(gl)ACTPDGPRPR_
VWA9	Ubiquitylation	K471	-0.102	-0.240	_TQTFYK(gl)ELNR_
XRCC5	Ubiquitylation	K195	-0.495	-0.075	_LGGHGPSFPLK(gl)GITEQQK_
XRCC5	Ubiquitylation	K265	-0.577	0.489	_IAAYK(gl)SILQER_
XRCC5	Ubiquitylation	K282	0.763		_TWTVVDAK(gl)TLKK_
XRCC5	Ubiquitylation	K325	0.022	-0.122	_YGSDIVPFSK(gl)VDEEQMK_
XRCC5	Ubiquitylation	K332	-0.032	0.491	_VDEEQMK(gl)YK_
XRCC5	Ubiquitylation	K347	0.588	1.044	_CFSVLGFCK(gl)SSQVQR_
XRCC5	Ubiquitylation	K481	-1.648	0.087	_TDTLEDLFPTTK(gl)IPNPR_
XRCC5	Ubiquitylation	K532	0.343	-0.001	_SQIPLSK(gl)IK_
XRCC5	Ubiquitylation	K534	-0.146	0.207	_SQIPLSKIK(gl)_
XRCC5	Ubiquitylation	K543	0.666	0.157	_TLFPLIEAK(gl)KK_
XRCC5	Ubiquitylation	K544	0.165	0.157	_TLFPLIEAKK(gl)_
XRCC5	Ubiquitylation	K660	0.644	1.285	_FNNFLK(gl)ALQEK_
XRCC5	Ubiquitylation	K665	0.630	0.990	_ALQEK(gl)VEIK_
XRCC5	Ubiquitylation	K702	0.626	0.332	_EEASGSSVTAEEAK(gl)K_
XRCC5	Ubiquitylation	K703	0.743	0.332	_EEASGSSVTAEEAKK(gl)_
XRCC6	Phosphorylation	S27	0.932	0.873	_TEGDEEAEEEQEENLEAS(ph)GDYK_
XRCC6	Ubiquitylation	K114	-0.534	-0.728	_NIYVLQELDNPGAK(gl)R_
XRCC6	Ubiquitylation	K123		-0.756	_ILELDQFK(gl)GQQGQK_
XRCC6	Ubiquitylation	K129	0.079	-0.683	_ILELDQFKGQQGQK(gl)R_
XRCC6	Ubiquitylation	K182		-1.603	_IMLFTNEDNPHGNDSAK(gl)ASR_
XRCC6	Ubiquitylation	K282	-2.587		_ALK(gl)PPPIK_
XRCC6	Ubiquitylation	K287	-1.436	-2.286	_ALKPPPIK(gl)LYR_
XRCC6	Ubiquitylation	K299	-0.535	-0.792	_ETNEPVKTK(gl)TR_
XRCC6	Ubiquitylation	K317	-0.584	-0.964	_TFNTSTGGLLLPSDTK(gl)R_
XRCC6	Ubiquitylation	K331	-1.666		_QIILEK(gl)EETEELKR_
XRCC6	Ubiquitylation	K338	-1.479	-1.003	_QIILEKEETEELK(gl)R_
XRCC6	Ubiquitylation	K451	-1.713	-1.901	_MPFTEK(gl)IMATPEQVGK_
XRCC6	Phosphorylation	T455	-0.085	0.348	_IMAT(ph)PEQVGK_
XRCC6	Ubiquitylation	K461	0.239	-0.409	_IMATPEQVGK(gl)MK_
XRCC6	Ubiquitylation	K463	-0.609	-0.641	_MK(gl)AIVEK_
XRCC6	Ubiquitylation	K468	-1.302	-0.451	_AIVEK(gl)LR_
XRCC6	Phosphorylation	S475	1.136	0.167	_S(ph)DSFENPVLQQHFR_
XRCC6	Phosphorylation	S477	1.023	0.034	_SDS(ph)FENPVLQQHFR_
XRCC6	Ubiquitylation	K516		-1.089	_VEAMNK(gl)R_
XRCC6	Phosphorylation	S560	0.318	0.378	_VEYS(ph)EEELKTHISK_
XRCC6	Ubiquitylation	K565	0.021	-0.887	_VEYSEEELK(gl)THISK_
XRCC6	Ubiquitylation	K575	0.031	-0.121	_GTLGK(gl)FTVPMLK_
XRCC6	Ubiquitylation	K591	0.474	0.187	_AYGLK(gl)SGLK_