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Query: SEC23B

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
SEC23B 0 -0.276 -0.860 0.650 -0.294 -0.827

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
SEC23B Ubiquitylation K331 -0.911 0.319 _ATK(gl)HYEM(ox)LANR_
SEC23B Ubiquitylation K320 -0.124 -0.120 _SWHDIEK(gl)DNAR_
SEC23B Ubiquitylation K208 -0.684 _QIQDMLGLTK(gl)PAMPMQQAR_
SEC23B Ubiquitylation K671 -0.713 _K(gl)AGYQDMPEYENFK_
SEC23B Ubiquitylation K564 -0.583 -0.895 _LCQK(gl)FGQYNK(gl)EDPTSFR_
SEC23B Ubiquitylation K558 -1.187 _LCQK(gl)FGQYNK(gl)EDPTSFR_
SEC23B Ubiquitylation K260 -1.638 _DPWPVTQGK(gl)RPLR_

Background Information for SEC23B:


Pubmed-SEC23B »
Uniprot-SEC23B »
Biogrid-SEC23B »
ProteomicsDB-SEC23B »

Tumorportal-SEC23B »
COSMIC-SEC23B »
GenomeRNAi-SEC23B »
Genecards-SEC23B


Protein-protein Interactions for SEC23B
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait SEC16A Cat. description Hein, Mann, Cell 2015
Category members IP bait SEC24C Cat. description Hein, Mann, Cell 2015
Category members IP bait C13orf18 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in SEC23B
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Znf_Sec23_Sec24 IPR006895 0.13
Category members Sec23/24_trunk_dom IPR006896 0.13
Category members Sec23/24_helical_dom IPR006900 0.13
Category members Sec23_24_beta_S IPR012990 0.13
Category members Gelsolin-like_dom IPR007123 0.09
Category members VWF_A IPR002035 0


Protein complexes (CORUM database) featuring SEC23B
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring SEC23B
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0006886 intracellular protein transport Database 2.48
Category members GO Category GO:0005789 endoplasmic reticulum membrane Database 1.57
Category members GO Category GO:0016192 vesicle-mediated transport Database 1.1
Category members GO Category GO:0016020 membrane Database 0.52
Category members GO Category GO:0043231 intracellular membrane-bounded organelle Database 0.43
Category members GO Category GO:0048471 perinuclear region of cytoplasm Database 0.39
Category members GO Category GO:0008270 zinc ion binding Database 0.29
Category members GO Category GO:0006888 ER to Golgi vesicle-mediated transport Database 0.28
Category members GO Category GO:0030127 COPII vesicle coat Database 0.08
Category members GO Category GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane Database 0.05
Category members GO Category GO:0000139 Golgi membrane Database 0


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