RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
CUL3	2	2.600	-1.300	0.182	-0.454	0.077	-0.259	-0.135
VCP	2	1.650	-0.640	-0.182	0.578	-0.596	0.007	-0.036
SPAST	1	-1.590	2.900
ANK1	1	3.470	-1.140
SEC23A	1	-1.970	3.860	0.314			0.139	-0.515
RANGRF	1	-1.570	2.600
ERGIC1	1	0.660	-0.250				0.068	0.199
STX18	1	2.030	-0.700				0.502	0.514
CREB3L2	1	-2.290	4.300
HTT	1	-0.200	-0.360	0.632			0.847	0.550
GOPC	0	-0.320	0.030
TRAPPC3	0	1.200	-0.360
LMAN1	0						0.562	0.393
LMAN1	0
SAR1A	0	0.350	-0.660	-0.088			0.687	0.548
SAR1A	0	0.350	-0.660
TMED2	0	0.150	-0.370				1.086	0.949
ZW10	0	-0.220	0.840	-0.532	0.113		0.496	0.629
SEC22C	0	0.050	-0.120
SEC23B	0	-0.860	0.650				-0.294	-0.827
RAB2A	0	0.030	0.470	1.242			0.604	0.660
BET1	0	0.000	-0.090
YKT6	0	0.160	-0.380
GOSR2	0	-0.380	0.660
GOSR2	0	-0.380	0.660				1.115	0.357
GOSR1	0	0.970	-1.150				1.072
GOSR1	0	1.110	0.200				1.072
SEC24A	0	0.060	-0.210				0.162	-0.582
LMAN2L	0	-0.170	-0.580				-0.059	-0.170
NRBP1	0	-1.270	2.090
KLHL12	0	-0.090	0.700		-1.351	-0.469
VAMP7	0	0.400	0.320				0.660	-0.175
COG3	0	1.060	-1.010
STX17	0	-1.260	1.910
RAB15	0	0.710	-0.750		1.641	-1.484	0.560	0.491
RAB1A	0	0.980	-0.460				-0.532
PREB	0	0.820	-0.890				-0.364	-0.232
SEC31A	0	1.690	-1.010	-0.161			-0.171	0.128
SEC24B	0	-0.430	0.680				-0.093	-0.387
TMX1	0			-0.010	0.926	-1.118	0.145	0.027
SAR1B	0	-1.030	1.290	-0.088			0.687	0.548
TRAPPC8	0	1.820	-1.310
SEC13	0	-0.290	0.170	1.171	0.795	0.493	-0.623	0.018
STX5	0	0.900	-0.590
TRAPPC1	0	-0.430	1.240
TMED10	0	0.230	0.210
SEC24C	0	0.420	-0.360					-0.393
TRAPPC2	0	0.270	-0.500
TRAPPC2B	0

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ANK1	Phosphorylation	S1686	-4.137		_ITHS(ph)PTVSQVTER_
BET1	Ubiquitylation	K57	0.624	0.608	_SK(gl)VTAIK_
BET1	Phosphorylation	S65	0.786	0.592	_SLS(ph)IEIGHEVK_
BET1	Ubiquitylation	K77	0.171		_SLSIEIGHEVKTQNK(gl)_
COG3	Phosphorylation	S663		0.575	_LNS(ph)NNALIEFLLEGTPEIR_
CREB3L2	Ubiquitylation	K364		-0.016	_LQTLVMGK(gl)VSR_
CUL3	Ubiquitylation	K6		-0.611	_(ac)SNLSK(gl)GTGSR_
CUL3	Ubiquitylation	K236	1.952	0.663	_FLAENSASVYIKK(gl)_
CUL3	Ubiquitylation	K262	-0.525	-0.203	_STEEPIVK(gl)VVER_
CUL3	Ubiquitylation	K292	1.094	0.852	_NGK(gl)TEDLGCMYK_
CUL3	Ubiquitylation	K459		0.752	_LK(gl)TECGCQFTSK_
CUL3	Ubiquitylation	K680	-1.024		_IQTVAAK(gl)QGESDPERK_
ERGIC1	Ubiquitylation	K241		1.549	_YDLSPITVK(gl)YTER_
ERGIC1	Ubiquitylation	K288	0.046	0.886	_IQLGK(gl)MH_
GOPC	Ubiquitylation	K147		0.122	_TGQSADSGTIK(gl)AK_
GOPC	Ubiquitylation	K208		-1.015	_LAAK(gl)YLDK_
GOSR1	Ubiquitylation	K150	-0.654	0.537	_K(gl)DIESYK(gl)SGSGVNNR_
GOSR1	Ubiquitylation	K199	-0.128	0.352	_GMLK(gl)SIHSK_
GOSR2	Ubiquitylation	K159	-0.182	0.653	_LTLK(gl)GTQK_
HTT	Ubiquitylation	K260		-0.128	_AFIANLK(gl)_
HTT	Phosphorylation	S419	0.595	0.531	_SGS(ph)IVELIAGGGSSCS(ph)PVLSR_
HTT	Phosphorylation	S430	0.402	0.494	_SGSIVELIAGGGSS(ph)CSPVLSR_
HTT	Phosphorylation	S432	0.317	0.640	_SGSIVELIAGGGSSCS(ph)PVLSR_
HTT	Phosphorylation	S1195	-0.222	0.264	_EKEPGEQAS(ph)VPLSPK_
HTT	Phosphorylation	S1199	-0.456	-0.970	_GKEKEPGEQASVPLS(ph)PK_
HTT	Ubiquitylation	K1402	0.169	-0.538	_VSTQLK(gl)TNLTSVTK_
HTT	Phosphorylation	S1874	1.994	1.028	_LLSPQMS(ph)GEEEDSDLAAK_
KLHL12	Ubiquitylation	K256		-0.549	_DLVDEAK(gl)K_
KLHL12	Ubiquitylation	K257		-0.549	_DLVDEAK(gl)K_
LMAN1	Ubiquitylation	K96		0.601	_GSVWTK(gl)TK_
LMAN1	Ubiquitylation	K346	-0.443		_IHLEIK(gl)QLNR_
LMAN1	Ubiquitylation	K372	1.187	0.921	_YVSSLTEEISK(gl)R_
LMAN1	Ubiquitylation	K407		0.987	_QVNEMK(gl)NSMSETVR_
LMAN1	Ubiquitylation	K463		-0.810	_NMPSNEK(gl)PK_
LMAN1	Ubiquitylation	K465		-0.810	_NMPSNEK(gl)PK_
NRBP1	Phosphorylation	S2	0.201	0.232	_S(ph)EGESQTVLSSGSDPK_
NRBP1	Phosphorylation	S11	0.309	-0.085	_(ac)SEGESQTVLS(ph)SGSDPK_
NRBP1	Phosphorylation	T441	-0.603	-0.439	_TPT(ph)PEPAEVETR_
PREB	Ubiquitylation	K218		-0.621	_DLK(gl)ASVWQK_
PREB	Ubiquitylation	K272		-1.012	_LFTVQIPHK(gl)R_
RAB15	Ubiquitylation	K163		0.199	_LLLGNK(gl)CDMEAK_
RAB15	Ubiquitylation	K174	-0.188		_VQK(gl)EQADKLAR_
RAB15	Ubiquitylation	K213	-0.059	0.420	_DILLK(gl)SGGR_
RAB1A	Phosphorylation	S2	-0.429	0.634	_(ac)S(ph)SM(ox)NPEYDYLFK_
RAB1A	Phosphorylation	S3	-0.429	0.634	_(ac)S(ph)SM(ox)NPEYDYLFK_
RAB1A	Ubiquitylation	K58	-0.012	-0.593	_TIELDGK(gl)TIK_
RAB1A	Ubiquitylation	K61		-0.593	_TIELDGK(gl)TIK_
RAB1A	Ubiquitylation	K119	0.581	0.444	_YASENVNK(gl)LLVGNK_
RAB1A	Ubiquitylation	K131		0.790	_LLVGNKCDLTTK(gl)K_
RAB1A	Ubiquitylation	K132	-0.154		_LLVGNKCDLTTKK(gl)_
RAB1A	Ubiquitylation	K187	0.229	0.152	_MGPGATAGGAEK(gl)SNVK_
RAB1A	Ubiquitylation	K191	-0.108	0.036	_SNVK(gl)IQSTPVK_
RAB2A	Ubiquitylation	K53		0.222	_MITIDGK(gl)QIK_
RAB2A	Ubiquitylation	K56	0.780	0.222	_MITIDGKQIK(gl)_
RAB2A	Ubiquitylation	K130	0.698	0.961	_EVK(gl)KEEGEAFAR_
RANGRF	Ubiquitylation	K113		0.395	_QQIAK(gl)ENQQVAK_
SAR1A	Ubiquitylation	K146	-0.516	-0.910	_TDAISEEK(gl)LR_
SAR1A	Ubiquitylation	K166	-0.970		_GNVTLK(gl)ELNAR_
SEC22C	Ubiquitylation	K297		-0.731	_QLQEK(gl)QSDCGV_
SEC23B	Ubiquitylation	K208		-0.684	_QIQDMLGLTK(gl)PAMPMQQAR_
SEC23B	Ubiquitylation	K260		-1.638	_DPWPVTQGK(gl)RPLR_
SEC23B	Ubiquitylation	K320	-0.124	-0.120	_SWHDIEK(gl)DNAR_
SEC23B	Ubiquitylation	K331	-0.911	0.319	_ATK(gl)HYEM(ox)LANR_
SEC23B	Ubiquitylation	K558		-1.187	_LCQK(gl)FGQYNK(gl)EDPTSFR_
SEC23B	Ubiquitylation	K564	-0.583	-0.895	_LCQK(gl)FGQYNK(gl)EDPTSFR_
SEC23B	Ubiquitylation	K671		-0.713	_K(gl)AGYQDMPEYENFK_
SEC24B	Phosphorylation	S1254		-0.049	_DSRPLS(ph)PILHIVKDESPAK_
SEC24C	Ubiquitylation	K956	-2.127	-1.632	_LLPLTK(gl)SPVESTTEPPAVR_
SEC31A	Ubiquitylation	K460	0.843	1.346	_SDQLQQAVQSQGFINYCQK(gl)K_
SEC31A	Ubiquitylation	K461	0.843	1.346	_SDQLQQAVQSQGFINYCQK(gl)K_
SEC31A	Phosphorylation	S527	-0.287	0.538	_DSDQVAQS(ph)DGEESPAAEEQLLGEHIK_
SEC31A	Phosphorylation	S799	-0.417	-0.388	_AQGEPVAGHES(ph)PKIPYEK_
SEC31A	Ubiquitylation	K806	-0.016	0.221	_IPYEK(gl)QQLPK_
SEC31A	Ubiquitylation	K1171	-0.024	-0.507	_CLSSATDPQTK(gl)R_
SEC31A	Phosphorylation	T1192	0.363	-1.264	_EQT(ph)LSPTITSGLHNIAR_
SEC31A	Phosphorylation	S1194	0.316	0.198	_EQTLS(ph)PTITSGLHNIAR_
SEC31A	Ubiquitylation	K1248	0.394	0.332	_VVLTQANK(gl)LGV_
SPAST	Phosphorylation	S268		0.172	_APS(ph)YSGLSMVSGVK_
STX17	Ubiquitylation	K299	-0.023	-0.044	_LTSSCPDLPSQTDK(gl)K_
STX17	Ubiquitylation	K300	-0.023	-0.044	_LTSSCPDLPSQTDK(gl)K_
STX18	Ubiquitylation	K62	-0.703		_EVISHIGK(gl)LR_
STX18	Phosphorylation	S189	-0.950	-0.393	_VSQS(ph)PSKDSEENPATEERPEK_
STX5	Ubiquitylation	K69	-0.362	-0.610	_TQEFLSACK(gl)SLQTR_
TMED10	Ubiquitylation	K146		-0.149	_NYEEIAK(gl)VEK_
TMX1	Ubiquitylation	K223	-0.915		_K(gl)LLSESAQPLKK_
TMX1	Ubiquitylation	K233	-0.752	0.034	_LLSESAQPLK(gl)K_
TMX1	Ubiquitylation	K234		0.013	_LLSESAQPLK(gl)K_
TMX1	Phosphorylation	S247	0.548	0.425	_VEEEQEADEEDVS(ph)EEEAESK_
TMX1	Phosphorylation	S270	0.589	0.579	_S(ph)LGPSLATDKS_
TMX1	Phosphorylation	S274		0.561	_SLGPS(ph)LATDKS_
TMX1	Ubiquitylation	K279	-0.052	0.536	_SLGPSLATDK(gl)S_
TRAPPC1	Ubiquitylation	K58	-0.375		_MSPLDMK(gl)DGFLAFQTSR_
TRAPPC2	Ubiquitylation	K142	-0.373		_KVQFLGK(gl)K_
TRAPPC2	Ubiquitylation	K143	-0.373		_KVQFLGK(gl)K_
TRAPPC2B	Ubiquitylation	K142	-0.373		_KVQFLGK(gl)K_
TRAPPC2B	Ubiquitylation	K143	-0.373		_KVQFLGK(gl)K_
TRAPPC3	Ubiquitylation	K156	-0.020	0.357	_FVQDTLK(gl)GDGVTEIR_
TRAPPC8	Phosphorylation	S971		0.640	_RPEFFTFGGNTAVLTPLS(ph)PSASENCSAYK_
VAMP7	Ubiquitylation	K125	0.653	1.311	_GLDK(gl)VMETQAQVDELK_
VAMP7	Ubiquitylation	K137	0.694	1.092	_VMETQAQVDELK(gl)GIMVR_
VAMP7	Ubiquitylation	K172	0.306		_TENLVDSSVTFK(gl)TTSR_
VCP	Phosphorylation	S3	0.795	1.142	_(ac)AS(ph)GADSKGDDLSTAILK_
VCP	Phosphorylation	S7	0.312	0.941	_(ac)ASGADS(ph)KGDDLSTAILK_
VCP	Ubiquitylation	K8	-0.439	-0.154	_(ac)ASGADSK(gl)GDDLSTAILK_
VCP	Ubiquitylation	K18	-0.452	0.181	_GDDLSTAILK(gl)QK_
VCP	Ubiquitylation	K20	-0.512	0.529	_(ac)ASGADSKGDDLSTAILKQK(gl)_
VCP	Ubiquitylation	K60	0.678	0.493	_GDTVLLK(gl)GKK_
VCP	Ubiquitylation	K81	0.084		_EAVCIVLSDDTCSDEK(gl)IR_
VCP	Ubiquitylation	K109	-0.847	-0.260	_LGDVISIQPCPDVK(gl)YGK(gl)R_
VCP	Ubiquitylation	K112	-0.736	-0.276	_LGDVISIQPCPDVK(gl)YGK(gl)R_
VCP	Ubiquitylation	K148	-0.262	-0.087	_K(gl)GDIFLVR_
VCP	Ubiquitylation	K211	1.383	0.902	_K(gl)QLAQIK_
VCP	Ubiquitylation	K236	-0.526	-0.178	_AIGVK(gl)PPR_
VCP	Ubiquitylation	K251	-0.110		_GILLYGPPGTGK(gl)TLIAR_
VCP	Ubiquitylation	K336	0.522		_IVSQLLTLMDGLK(gl)QR_
VCP	Ubiquitylation	K386	1.339	0.706	_LEILQIHTK(gl)NM(ox)K_
VCP	Ubiquitylation	K389	0.568	1.195	_LEILQIHTKNMK(gl)_
VCP	Ubiquitylation	K505	0.377	0.794	_FLK(gl)FGMTPSK_
VCP	Ubiquitylation	K524		-0.528	_GVLFYGPPGCGK(gl)TLLAK_
VCP	Ubiquitylation	K529		-0.250	_GVLFYGPPGCGKTLLAK(gl)_
VCP	Ubiquitylation	K565	0.645	0.689	_EIFDK(gl)AR_
VCP	Ubiquitylation	K615	1.209	1.270	_VINQILTEMDGMSTKK(gl)_
VCP	Ubiquitylation	K651	-1.709	-0.719	_LDQLIYIPLPDEK(gl)SR_
VCP	Ubiquitylation	K658	0.362	0.711	_VAILK(gl)ANLR_
VCP	Ubiquitylation	K663	-0.839		_K(gl)SPVAKDVDLEFLAK_
VCP	Ubiquitylation	K668	-0.536	0.265	_SPVAK(gl)DVDLEFLAK_
VCP	Ubiquitylation	K696	1.574	1.691	_ACK(gl)LAIR_
VCP	Ubiquitylation	K754	0.510	0.939	_K(gl)YEMFAQTLQQSR_
YKT6	Ubiquitylation	K103	0.656		_VLDEFSK(gl)QVDR_
YKT6	Phosphorylation	S114		-1.569	_IDWPVGS(ph)PATIHYPALDGHLSR_
YKT6	Ubiquitylation	K141	-0.073		_EADPMTK(gl)VQAELDETK_
ZW10	Ubiquitylation	K777	-0.384		_AAALAK(gl)IK_