bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: TRAPPC2

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
TRAPPC2 0 -0.373 0.270 -0.500

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
TRAPPC2 Ubiquitylation K142 -0.373 _KVQFLGK(gl)K_
TRAPPC2 Ubiquitylation K143 -0.373 _KVQFLGK(gl)K_

Background Information for TRAPPC2:


Pubmed-TRAPPC2 »
Uniprot-TRAPPC2 »
Biogrid-TRAPPC2 »
ProteomicsDB-TRAPPC2 »

Tumorportal-TRAPPC2 »
COSMIC-TRAPPC2 »
GenomeRNAi-TRAPPC2 »
Genecards-TRAPPC2


Protein-protein Interactions for TRAPPC2
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait BCL2L14 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait CABS1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait CRYAB Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait DNASE2B Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait GLB1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait JOSD2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait KANK4 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait PCDH20 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait RNF19B Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait STMN4 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TBC1D14 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TMPRSS11B Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TRAPPC2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait ZBED1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in TRAPPC2
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Longin-like_dom IPR011012 0.34
Category members Sedlin IPR006722 0.1
Category members Sybindin IPR007233 0


Protein complexes (CORUM database) featuring TRAPPC2
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring TRAPPC2
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0006351 transcription, DNA-templated Database 1.07
Category members GO Category GO:0005783 endoplasmic reticulum Database 0.62
Category members GO Category GO:0048471 perinuclear region of cytoplasm Database 0.39
Category members GO Category GO:0008134 transcription factor binding Database 0.37
Category members GO Category GO:0005622 intracellular Database 0.32
Category members GO Category GO:0006888 ER to Golgi vesicle-mediated transport Database 0.28
Category members GO Category GO:0005794 Golgi apparatus Database 0.27
Category members GO Category GO:0005801 cis-Golgi network Database 0.1
Category members GO Category GO:0044325 ion channel binding Database 0.03
Category members GO Category GO:0001501 skeletal system development Database 0
Category members GO Category GO:0006355 regulation of transcription, DNA-dependent Database 0
Category members GO Category GO:0006810 transport Database 0


.

© Copyright Svejstrup Laboratory 2015