RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
AP3M1	1	2.120	-1.010	-0.529			-0.213	-0.553
AP4M1	1	1.440	-1.120
AP2S1	0	-0.210	0.500	-0.049	0.539	0.830	0.375
AP3M2	0	0.330	-0.600	-0.529			-0.213	-0.553
AP1M1	0	-0.550	0.780				-0.171	-0.095
AP1M1	0	-0.550	0.780	0.192
SEC22C	0	0.050	-0.120
YKT6	0	0.160	-0.380
COPZ1	0				0.462	-0.105	-0.741
VAMP7	0	0.400	0.320				0.660	-0.175
AP3S2	0	-0.930	0.720
AP2M1	0	-1.250	2.200	-0.363	0.794	-0.187	0.544	0.370
AP2M1	0	-1.250	2.200
MON1A	0	-1.290	1.600
TRAPPC1	0	-0.430	1.240
AP3S1	0	1.210	-1.210	-1.064			-0.141
AP1S2	0	1.190	-0.690	-1.049
SRPR	0			-1.161		-0.324	0.122	0.360
TRAPPC2	0	0.270	-0.500
C15orf38-A	0
TRAPPC2B	0

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AP1M1	Ubiquitylation	K43		-0.691	_(ac)SASAVYVLDLK(gl)GK_
AP1M1	Ubiquitylation	K45		-0.691	_(ac)SASAVYVLDLK(gl)GK_
AP1M1	Ubiquitylation	K272	-0.542		_SK(gl)SVELEDVK_
AP1M1	Ubiquitylation	K280		-0.292	_SVELEDVK(gl)FHQCVR_
AP1M1	Ubiquitylation	K369	0.791	0.647	_FK(gl)TTVGSVK_
AP2M1	Ubiquitylation	K249	0.386	0.460	_IVIEK(gl)QGK_
AP2M1	Ubiquitylation	K263	-0.058	-0.236	_SGK(gl)QSIAIDDCTFHQCVR_
AP2M1	Ubiquitylation	K281	-0.401	0.214	_LSK(gl)FDSER_
AP2M1	Ubiquitylation	K306	-2.014	-0.836	_TTK(gl)DIILPFR_
AP2M1	Ubiquitylation	K337	-1.115		_SNFK(gl)PSLLAQK_
AP2M1	Ubiquitylation	K364	-1.253		_IPTPLNTSGVQVICMK(gl)GK_
AP2S1	Ubiquitylation	K45	-1.058	-0.297	_DAK(gl)HTNFVEFR_
AP2S1	Ubiquitylation	K130	-1.793	0.099	_ETSQTK(gl)VLK_
AP3M1	Ubiquitylation	K283	-0.147		_HSISFK(gl)ENSSCGR_
AP3M1	Ubiquitylation	K413	-0.636	-0.807	_AGK(gl)FQVR_
AP3M2	Ubiquitylation	K283	-0.147		_HSISFK(gl)ENSSCGR_
AP3M2	Ubiquitylation	K413	-0.636	-0.807	_AGK(gl)FQVR_
AP3S1	Ubiquitylation	K18	-0.109	0.558	_LSK(gl)FYQPYSEDTQQQIIR_
AP3S1	Ubiquitylation	K166	-0.248		_AVSAVK(gl)NMNLPEIPR_
AP3S1	Ubiquitylation	K193	-0.977		_VPNLPSFK(gl)_
AP3S2	Ubiquitylation	K350		0.204	_LEK(gl)SEGGLSAAPAR_
AP3S2	Ubiquitylation	K367	-1.289	-0.624	_AVSAVK(gl)NINLPEIPR_
AP4M1	Phosphorylation	S128	1.632		_LS(ph)VLIASNGSLLK_
AP4M1	Phosphorylation	S133		1.202	_LSVLIAS(ph)NGSLLK_
C15orf38-AP3S2	Ubiquitylation	K182		0.119	_LEAGTVTK(gl)CNFTGDGK_
C15orf38-AP3S2	Ubiquitylation	K350		0.204	_LEK(gl)SEGGLSAAPAR_
C15orf38-AP3S2	Ubiquitylation	K367	-1.289	-0.624	_AVSAVK(gl)NINLPEIPR_
COPZ1	Ubiquitylation	K39	-0.856	0.058	_YYDDTYPSVK(gl)EQK_
COPZ1	Ubiquitylation	K42	-1.066	1.228	_YYDDTYPSVKEQK(gl)_
COPZ1	Ubiquitylation	K46	-1.607	0.461	_AFEK(gl)NIFNK_
COPZ1	Ubiquitylation	K51	-0.475	-1.280	_NIFNK(gl)THR_
COPZ1	Ubiquitylation	K193	-0.631	-0.012	_EQIK(gl)WSLLR_
MON1A	Phosphorylation	S31		-0.402	_AES(ph)PTPGMAQGMEPGAGQEGAMFVHAR_
MON1A	Phosphorylation	S56	0.647	0.773	_S(ph)YEDLTESEDGAASGDSHK_
SEC22C	Ubiquitylation	K297		-0.731	_QLQEK(gl)QSDCGV_
SRPR	Ubiquitylation	K129		-0.460	_EAEESSK(gl)IR_
TRAPPC1	Ubiquitylation	K58	-0.375		_MSPLDMK(gl)DGFLAFQTSR_
TRAPPC2	Ubiquitylation	K142	-0.373		_KVQFLGK(gl)K_
TRAPPC2	Ubiquitylation	K143	-0.373		_KVQFLGK(gl)K_
TRAPPC2B	Ubiquitylation	K142	-0.373		_KVQFLGK(gl)K_
TRAPPC2B	Ubiquitylation	K143	-0.373		_KVQFLGK(gl)K_
VAMP7	Ubiquitylation	K125	0.653	1.311	_GLDK(gl)VMETQAQVDELK_
VAMP7	Ubiquitylation	K137	0.694	1.092	_VMETQAQVDELK(gl)GIMVR_
VAMP7	Ubiquitylation	K172	0.306		_TENLVDSSVTFK(gl)TTSR_
YKT6	Ubiquitylation	K103	0.656		_VLDEFSK(gl)QVDR_
YKT6	Phosphorylation	S114		-1.569	_IDWPVGS(ph)PATIHYPALDGHLSR_
YKT6	Ubiquitylation	K141	-0.073		_EADPMTK(gl)VQAELDETK_