bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: LAMA5

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
LAMA5 0 5.169 -1.280 1.860 1.257 0.402 0.337

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
LAMA5 Ubiquitylation K255 1.313 _EFTK(gl)ATNVR_

Background Information for LAMA5:


Pubmed-LAMA5 »
Uniprot-LAMA5 »
Biogrid-LAMA5 »
ProteomicsDB-LAMA5 »

Tumorportal-LAMA5 »
COSMIC-LAMA5 »
GenomeRNAi-LAMA5 »
Genecards-LAMA5


Protein-protein Interactions for LAMA5
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait CENPE Cat. description Hein, Mann, Cell 2015
Category members IP bait MAST3 Cat. description Hein, Mann, Cell 2015
Category members IP bait PIP4K2C Cat. description Hein, Mann, Cell 2015
Category members IP bait RNASEH2A Cat. description Hein, Mann, Cell 2015
Category members IP bait BCAM Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait C4orf26 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait CRP Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait DEFA1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait DKK3 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait INSL5 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait OS9 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait PTPRK Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SCGB2A2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SUSD4 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TMEM25 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in LAMA5
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members EG-like_dom IPR000742 1.74
Category members Laminin_G IPR001791 0.06
Category members EGF_laminin IPR002049 0.04
Category members Laminin_B_type_IV IPR000034 0
Category members TNFR/NGFR_Cys_rich_reg IPR001368 0
Category members Laminin_N IPR008211 0
Category members Galactose-bd-like IPR008979 0
Category members ConA-like_lec_gl_sf IPR008985 0
Category members Laminin_I IPR009254 0
Category members Laminin_domII IPR010307 0
Category members Laminin_B_subgr IPR018031 0


Protein complexes (CORUM database) featuring LAMA5
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members Corum 2318 ITGA6-ITGB4-Laminin10/12 complex Database 0
Category members Corum 2319 ITGA6-ITGB4-Laminin10/12 complex Database 0
Category members Corum 2322 ITGA6-ITGB4-LAMA5 complex Database 0


Categories featuring LAMA5
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005615 extracellular space Database 4.72
Category members Pathway Pathway_595 KEGG_FOCAL_ADHESION 0 1.08
Category members GO Category GO:0005198 structural molecule activity Database 0.94
Category members GO Category GO:0030334 regulation of cell migration Database 0.61
Category members GO Category GO:0005578 proteinaceous extracellular matrix Database 0.53
Category members GO Category GO:0031012 extracellular matrix Database 0.45
Category members GO Category GO:0030324 lung development Database 0.39
Category members GO Category GO:0030198 extracellular matrix organization Database 0.26
Category members GO Category GO:0034446 substrate adhesion-dependent cell spreading Database 0.26
Category members GO Category GO:0048041 focal adhesion assembly Database 0.1
Category members GO Category GO:0001738 morphogenesis of a polarized epithelium Database 0.09
Category members GO Category GO:0005178 integrin binding Database 0.09
Category members Pathway Pathway_626 PID_A6B1_A6B4_INTEGRIN_PATHWAY 0 0.09
Category members GO Category GO:0008283 cell proliferation Database 0.06
Category members GO Category GO:0030154 cell differentiation Database 0.06
Category members GO Category GO:0042127 regulation of cell proliferation Database 0.06
Category members GO Category GO:0043259 laminin-10 complex Database 0.04
Category members Pathway Pathway_1027 PID_INTEGRIN1_PATHWAY 0 0
Category members Pathway Pathway_1290 PID_INTEGRIN4_PATHWAY 0 0
Category members Pathway Pathway_24 KEGG_PATHWAYS_IN_CANCER 0 0
Category members Pathway Pathway_283 KEGG_SMALL_CELL_LUNG_CANCER 0 0
Category members Pathway Pathway_476 PID_SYNDECAN_1_PATHWAY 0 0
Category members Pathway Pathway_922 KEGG_ECM_RECEPTOR_INTERACTION 0 0
Category members Pathway Pathway_930 REACTOME_INTEGRIN_CELL_SURFACE_INTERACTIONS 0 0
Category members GO Category GO:0001525 angiogenesis Database 0
Category members GO Category GO:0001658 branching involved in ureteric bud morphogenesis Database 0
Category members GO Category GO:0001755 neural crest cell migration Database 0
Category members GO Category GO:0001942 hair follicle development Database 0
Category members GO Category GO:0005102 receptor binding Database 0
Category members GO Category GO:0005604 basement membrane Database 0
Category members GO Category GO:0005605 basal lamina Database 0
Category members GO Category GO:0005606 laminin-1 complex Database 0
Category members GO Category GO:0005610 laminin-5 complex Database 0
Category members GO Category GO:0007010 cytoskeleton organization Database 0
Category members GO Category GO:0007155 cell adhesion Database 0
Category members GO Category GO:0007229 integrin-mediated signaling pathway Database 0
Category members GO Category GO:0007517 muscle organ development Database 0
Category members GO Category GO:0008037 cell recognition Database 0
Category members GO Category GO:0009790 embryo development Database 0
Category members GO Category GO:0009887 organ morphogenesis Database 0
Category members GO Category GO:0016331 morphogenesis of embryonic epithelium Database 0
Category members GO Category GO:0016477 cell migration Database 0
Category members GO Category GO:0030155 regulation of cell adhesion Database 0
Category members GO Category GO:0042384 cilium assembly Database 0
Category members GO Category GO:0042475 odontogenesis of dentin-containing tooth Database 0
Category members GO Category GO:0043260 laminin-11 complex Database 0
Category members GO Category GO:0045446 endothelial cell differentiation Database 0
Category members GO Category GO:0045995 regulation of embryonic development Database 0
Category members GO Category GO:0048754 branching morphogenesis of an epithelial tube Database 0
Category members GO Category GO:0060445 branching involved in salivary gland morphogenesis Database 0


.

© Copyright Svejstrup Laboratory 2015