RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
PPP1CA	3	2.150	-0.860
PPP1CA	3	2.150	-0.860	-0.250	0.634	0.981	-0.108	0.171
TIMELESS	2	-0.820	1.340	-0.115	-0.810	1.489	0.880	0.424
DICER1	1	-0.810	0.800	1.748			-0.207	-0.634
PKD1	0	-0.900	0.980
MKS1	0
PXN	0	1.020	-0.760
BMP7	0
MET	0	-0.010	-0.330
GLI3	0	-0.980	1.650
KDR	0	0.860	-0.680
LAMA5	0	-1.280	1.860	1.257			0.402	0.337
SLIT2	0	-0.940	1.740				-3.112	-1.071
PAK1	0	1.190	-0.630
CLIC4	0			-0.105

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
BMP7	Ubiquitylation	K178		-0.107	_IYK(gl)DYIR_
CLIC4	Ubiquitylation	K106	-0.220	0.166	_YLK(gl)LSPK_
CLIC4	Ubiquitylation	K146	-0.028	0.596	_GLLK(gl)TLQK_
CLIC4	Ubiquitylation	K199	0.892	0.090	_LHIVK(gl)VVAK_
CLIC4	Ubiquitylation	K249	-0.463		_DEFTNTCPSDKEVEIAYSDVAK(gl)R_
GLI3	Phosphorylation	S664	-0.582	-0.252	_S(ph)PGRPTQGALGEQQDLSNTTSK_
KDR	Ubiquitylation	K1064		-1.119	_DIYK(gl)DPDYVR_
LAMA5	Ubiquitylation	K255		1.313	_EFTK(gl)ATNVR_
MET	Ubiquitylation	K962	0.146		_QIK(gl)DLGSELVR_
MET	Phosphorylation	S988	0.064		_S(ph)VSPTTEM(ox)VSNESVDYR_
MET	Phosphorylation	S990	0.192	-0.105	_SVS(ph)PTTEM(ox)VSNESVDYR_
MET	Phosphorylation	T992	0.501	-0.048	_SVSPT(ph)TEMVSNESVDYR_
MET	Phosphorylation	S997		0.285	_S(ph)VSPTTEMVS(ph)NESVDYR_
MKS1	Ubiquitylation	K178	-0.574	0.716	_GMEGGILK(gl)SR_
MKS1	Ubiquitylation	K469		-0.213	_IPGSFK(gl)GER_
MKS1	Ubiquitylation	K507	0.137	-0.095	_AFMESSSLQK(gl)R_
PAK1	Phosphorylation	S174	-1.439	-0.597	_AVSETPAVPPVS(ph)EDEDDDDDDATPPPVIAPRPEHTK_
PAK1	Phosphorylation	T212		0.312	_SVIEPLPVT(ph)PTR_
PAK1	Phosphorylation	T219	-0.560	-0.962	_DVAT(ph)SPISPTENNTT(ph)PPDALTR_
PAK1	Phosphorylation	S220	-0.916	-0.774	_DVATS(ph)PISPTENNTTPPDALTR_
PAK1	Phosphorylation	S223	1.033	0.153	_DVATSPIS(ph)PTENNTTPPDALTR_
PAK1	Phosphorylation	T225	-1.278		_DVATSPISPT(ph)ENNTTPPDALTR_
PAK1	Phosphorylation	T230	-1.418	-1.502	_DVATSPISPTENNTT(ph)PPDALTR_
PKD1	Phosphorylation	T867		0.841	_GT(ph)YHVRLEVNNTVSGAAAQADVR_
PPP1CA	Ubiquitylation	K6	0.594	0.414	_(ac)SDSEK(gl)LNLDSIIGR_
PPP1CA	Ubiquitylation	K50	-0.131	0.478	_GLCLK(gl)SR_
PPP1CA	Ubiquitylation	K150	0.321	0.619	_IYGFYDECK(gl)RR_
PPP1CA	Ubiquitylation	K156	0.883	1.047	_YNIK(gl)LWK_
PPP1CA	Ubiquitylation	K247	0.313		_FLHK(gl)HDLDLICR_
PPP1CA	Ubiquitylation	K269	2.628	2.591	_AHQVVEDGYEFFAK(gl)R_
PXN	Phosphorylation	S85	-0.156	0.192	_FIHQQPQSSS(ph)PVYGSSAK_
PXN	Phosphorylation	T136		1.322	_SAEPSPTVMST(ph)SLGSNLSELDR_
PXN	Phosphorylation	S140	-0.291	-0.948	_SAEPSPTVM(ox)STSLGS(ph)NLSELDR_
PXN	Phosphorylation	S302	-0.167		_S(ph)SPGGQDEGGFMAQGK_
PXN	Phosphorylation	S303	-0.167		_S(ph)SPGGQDEGGFMAQGK_
PXN	Phosphorylation	S322	-1.234		_TGSSS(ph)PPGGPPKPGSQLDSMLGSLQSDLNK_
SLIT2	Ubiquitylation	K72		-1.544	_ITK(gl)TDFAGLR_
SLIT2	Ubiquitylation	K103		0.625	_GAFQDLK(gl)ELER_
SLIT2	Ubiquitylation	K825		0.073	_TFDGLK(gl)SLR_
TIMELESS	Ubiquitylation	K528		-0.868	_GNLVVQNK(gl)QK_
TIMELESS	Ubiquitylation	K530		-0.868	_GNLVVQNK(gl)QK_
TIMELESS	Phosphorylation	S1087	0.076	-0.254	_LS(ph)PTQLR_
TIMELESS	Phosphorylation	S1149	1.556	1.776	_KAGLAS(ph)PEEEDAVGKEPLK_
TIMELESS	Phosphorylation	S1173		0.502	_RQLLDS(ph)DEEQEEDEGR_