RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
EPHA7	2	2.050	-0.990					0.221
EPHA7	2	2.050	-0.990
ZZEF1	1	-1.360	2.030
TXNL1	1	2.300	-1.010	-0.185
HECTD1	1	-0.730	0.420	0.181			-1.016	-0.692
SP3	1	2.510	-0.930	-0.403			0.807	0.836
MYCBP2	0	0.060	-0.220				-0.056	0.347
CUL7	0	1.580	-1.240	-1.778	-0.501	-0.333	-0.058	0.103
DCBLD2	0	0.690	-0.380
PITHD1	0	-1.710	2.480
XRCC1	0	-0.010	0.060	-0.364	-0.736	-0.059	0.224	0.061
EPHA6	0	-1.140	1.990					0.221
EPHA6	0	-0.490	0.330					0.221
SUCO	0	-0.620	0.980					0.408
NRP1	0	0.880	-0.670				0.909	0.353
SUN2	0	-0.400	1.600		-2.388	-0.078	0.839	0.876
NPRL3	0	1.300	-0.580
CUL9	0	0.460	-0.720
BIRC6	0	-0.150	-0.410	-0.224
CEP104	0	-0.140	-0.240
HECTD3	0	-0.230	0.290	-0.803
MKLN1	0	-0.010	0.330
LAMA5	0	-1.280	1.860	1.257			0.402	0.337
EPHB2	0	-0.630	0.780					0.221
EPHB2	0	-0.630	0.780
PCSK6	0	0.020	-0.380
FURIN	0	1.280	-0.730
EPHA2	0	1.330	-0.460					0.221
EPHA5	0	-0.280	0.790
GLB1L2	0
NGLY1	0	0.750	-0.670
EPHB1	0	-0.220	0.000					0.221
EPHB1	0	-0.220	0.000	-0.042
EPHB1	0	-0.220	0.000
ANAPC10	0	-0.400	0.360		0.059	0.487	0.244	0.100
DCBLD1	0	0.970	-0.850
GLB1	0	-1.310	1.460				0.469	0.688
EPHB3	0	0.800	-0.380					0.221
EPHB3	0	0.800	-0.380
BTBD9	0	0.870	-0.670
NCCRP1	0	-0.430	0.240					-3.654
EPHB4	0	1.130	-1.030
LAMA2	0	1.640	-0.040
LAMA2	0	1.640	-0.040			-0.260

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
BIRC6	Ubiquitylation	K1643	0.456	1.279	_QQQLLK(gl)LQQQK_
BIRC6	Ubiquitylation	K2258	0.781	0.364	_ALVEQMEK(gl)EK_
BIRC6	Ubiquitylation	K2260	1.136	0.364	_ALVEQMEKEK(gl)_
BIRC6	Ubiquitylation	K2265	1.175		_IQSNK(gl)GSSYKLLVEQAK_
BIRC6	Ubiquitylation	K2270	0.915	1.024	_GSSYK(gl)LLVEQAK_
BIRC6	Ubiquitylation	K2277	0.786		_LLVEQAK(gl)LK_
BIRC6	Ubiquitylation	K2279		-0.121	_LLVEQAKLK(gl)_
BIRC6	Ubiquitylation	K3146	0.462	-0.459	_AVDSTLK(gl)TR_
BIRC6	Ubiquitylation	K4020	-0.186		_VITDPSLSK(gl)TDSYKR_
BTBD9	Ubiquitylation	K281		0.159	_GMLIPEENIATMK(gl)YGAQVVK_
BTBD9	Ubiquitylation	K288		0.273	_YGAQVVK(gl)GELK_
CEP104	Ubiquitylation	K105	-0.061	-1.010	_LGYVSLCDNEK(gl)TGCK_
CUL7	Ubiquitylation	K651	1.265	0.880	_DLINCHVYKK(gl)_
CUL9	Ubiquitylation	K986		-2.376	_EGSPGGAVRPLLK(gl)R_
CUL9	Ubiquitylation	K1881	0.853		_ILK(gl)AHGEK_
DCBLD1	Phosphorylation	S633		-0.565	_HS(ph)LSSGGFSPVAGVGAQDGDYQRPHSAQPADR_
DCBLD1	Phosphorylation	S640	0.276		_HSLSSGGFS(ph)PVAGVGAQDGDYQRPHSAQPADR_
DCBLD2	Ubiquitylation	K439		-1.031	_VNPTQWQQK(gl)IAMK_
DCBLD2	Ubiquitylation	K580	-0.063		_GMK(gl)QFLPAK_
EPHA2	Ubiquitylation	K578	-0.752	-0.618	_QSPEDVYFSK(gl)SEQLKPLK_
EPHA2	Ubiquitylation	K583	0.445	0.124	_SEQLK(gl)PLK_
EPHA2	Ubiquitylation	K617	0.339		_QK(gl)VIGAGEFGEVYK_
EPHA2	Ubiquitylation	K649	-1.219		_TLK(gl)AGYTEK_
EPHA2	Phosphorylation	S897		0.000	_LPS(ph)TSGSEGVPFR_
EPHA2	Phosphorylation	T898	-0.329	0.424	_LPST(ph)SGSEGVPFR_
EPHA5	Ubiquitylation	K657	0.533		_LKLPGK(gl)R_
EPHA6	Ubiquitylation	K578	-0.752	-0.618	_QSPEDVYFSK(gl)SEQLKPLK_
EPHA6	Ubiquitylation	K583	0.445	0.124	_SEQLK(gl)PLK_
EPHA6	Ubiquitylation	K617	0.339		_QK(gl)VIGAGEFGEVYK_
EPHA6	Ubiquitylation	K649	-1.219		_TLK(gl)AGYTEK_
EPHA6	Phosphorylation	S897		0.000	_LPS(ph)TSGSEGVPFR_
EPHA6	Phosphorylation	T898	-0.329	0.424	_LPST(ph)SGSEGVPFR_
EPHA7	Ubiquitylation	K180		0.633	_EIGPLSKK(gl)_
EPHA7	Ubiquitylation	K272		0.520	_AGYQQK(gl)GDTCEPCGR_
EPHA7	Ubiquitylation	K578	-0.752	-0.618	_QSPEDVYFSK(gl)SEQLKPLK_
EPHA7	Ubiquitylation	K583	0.445	0.124	_SEQLK(gl)PLK_
EPHA7	Ubiquitylation	K606	-0.162		_FPGTK(gl)TYIDPETYEDPNR_
EPHA7	Ubiquitylation	K617	0.339		_QK(gl)VIGAGEFGEVYK_
EPHA7	Ubiquitylation	K634	0.732	1.340	_ELDASCIK(gl)IER_
EPHA7	Ubiquitylation	K649	-1.219		_TLK(gl)AGYTEK_
EPHA7	Ubiquitylation	K657	0.533		_LKLPGK(gl)R_
EPHA7	Ubiquitylation	K665		3.196	_DVAVAIK(gl)TLK_
EPHA7	Ubiquitylation	K797	-1.229	-0.459	_VIEDDPEAVYTTTGGK(gl)IPVR_
EPHA7	Phosphorylation	S897		0.000	_LPS(ph)TSGSEGVPFR_
EPHA7	Phosphorylation	T898	-0.329	0.424	_LPST(ph)SGSEGVPFR_
EPHA7	Phosphorylation	S912		-0.413	_TPLGTCSRPIS(ph)PLLDQNTPDFTTFCSVGEWLQAIK_
EPHB1	Ubiquitylation	K578	-0.752	-0.618	_QSPEDVYFSK(gl)SEQLKPLK_
EPHB1	Ubiquitylation	K583	0.445	0.124	_SEQLK(gl)PLK_
EPHB1	Ubiquitylation	K617	0.339		_QK(gl)VIGAGEFGEVYK_
EPHB1	Ubiquitylation	K649	-1.219		_TLK(gl)AGYTEK_
EPHB1	Ubiquitylation	K657	0.533		_LKLPGK(gl)R_
EPHB1	Phosphorylation	S897		0.000	_LPS(ph)TSGSEGVPFR_
EPHB1	Phosphorylation	T898	-0.329	0.424	_LPST(ph)SGSEGVPFR_
EPHB2	Ubiquitylation	K578	-0.752	-0.618	_QSPEDVYFSK(gl)SEQLKPLK_
EPHB2	Ubiquitylation	K583	0.445	0.124	_SEQLK(gl)PLK_
EPHB2	Ubiquitylation	K617	0.339		_QK(gl)VIGAGEFGEVYK_
EPHB2	Ubiquitylation	K649	-1.219		_TLK(gl)AGYTEK_
EPHB2	Phosphorylation	S776	-0.147	-0.171	_FLEDDTS(ph)DPTYTSALGGK_
EPHB2	Phosphorylation	S897		0.000	_LPS(ph)TSGSEGVPFR_
EPHB2	Phosphorylation	T898	-0.329	0.424	_LPST(ph)SGSEGVPFR_
EPHB3	Ubiquitylation	K578	-0.752	-0.618	_QSPEDVYFSK(gl)SEQLKPLK_
EPHB3	Ubiquitylation	K583	0.445	0.124	_SEQLK(gl)PLK_
EPHB3	Ubiquitylation	K617	0.339		_QK(gl)VIGAGEFGEVYK_
EPHB3	Ubiquitylation	K649	-1.219		_TLK(gl)AGYTEK_
EPHB3	Phosphorylation	S897		0.000	_LPS(ph)TSGSEGVPFR_
EPHB3	Phosphorylation	T898	-0.329	0.424	_LPST(ph)SGSEGVPFR_
EPHB3	Ubiquitylation	K960	0.133		_IGVTLAGHQKK(gl)_
EPHB4	Ubiquitylation	K885	-1.394		_NPASLK(gl)IVAR_
EPHB4	Ubiquitylation	K960	0.133		_IGVTLAGHQKK(gl)_
FURIN	Ubiquitylation	K789	-1.074	-0.470	_TAFIK(gl)DQSAL_
GLB1	Ubiquitylation	K91		0.224	_DSFLK(gl)DGQPFR_
GLB1L2	Ubiquitylation	K188		-0.577	_VVPLQYK(gl)R_
HECTD1	Ubiquitylation	K255	-0.575	-0.414	_MAAAGGTVSGPSSACK(gl)PGR_
HECTD1	Ubiquitylation	K340	1.634		_KALPK(gl)SSAGSTGR_
HECTD1	Phosphorylation	S631		-0.150	_VSTLAGPS(ph)SDDENEEESKPEKEDEPQEDAK_
HECTD1	Phosphorylation	S632	-0.423	-0.150	_VSTLAGPSS(ph)DDENEEESKPEKEDEPQEDAK_
HECTD1	Ubiquitylation	K1253	-0.263		_AAK(gl)EAEANLRR_
HECTD1	Ubiquitylation	K1272		-0.167	_SQVLK(gl)YMVPGAR_
HECTD1	Ubiquitylation	K1287	-0.787	-0.617	_GLDWK(gl)WR_
HECTD1	Ubiquitylation	K1371		-0.621	_NNCPDK(gl)TSAAAGSSSR_
HECTD1	Ubiquitylation	K1382	0.103		_K(gl)GSSSSVCSVASSSDISLGSTK_
HECTD1	Ubiquitylation	K1768	-0.397		_TWDDDYVLK(gl)R_
HECTD1	Ubiquitylation	K2471	-0.108		_DGFNK(gl)VFPMEK_
HECTD1	Ubiquitylation	K2605		0.861	_LLAATMEK(gl)GFHLN_
HECTD3	Ubiquitylation	K322		-0.493	_RVVVYGGEGDNLKK(gl)_
LAMA2	Ubiquitylation	K2038	-0.340		_LQAVK(gl)DKAR_
LAMA2	Ubiquitylation	K2040	-0.340		_LQAVK(gl)DKAR_
LAMA5	Ubiquitylation	K255		1.313	_EFTK(gl)ATNVR_
MKLN1	Ubiquitylation	K260	-0.363	-0.383	_STK(gl)GDGEDNRPGMR_
MYCBP2	Phosphorylation	S2749	0.017	-0.052	_S(ph)LSPNHNTLQTLK_
MYCBP2	Phosphorylation	S2751	0.170	0.255	_SLS(ph)PNHNTLQTLK_
MYCBP2	Phosphorylation	S2831		0.378	_S(ph)KSDSYTLDPDTLR_
MYCBP2	Phosphorylation	S2833	-0.275	-1.121	_SKS(ph)DSYTLDPDTLR_
MYCBP2	Phosphorylation	S3467	-0.138	0.527	_VNS(ph)GDTEVGSSLLR_
MYCBP2	Ubiquitylation	K3750	1.316	0.824	_NITINCVK(gl)GINAR_
NGLY1	Ubiquitylation	K100	0.078		_KASVEQLQK(gl)IR_
NGLY1	Ubiquitylation	K204	-0.723	0.161	_ALACIPVQELK(gl)R_
NGLY1	Ubiquitylation	K272	-0.873	-0.156	_SLLPSDDELK(gl)WGAK_
NGLY1	Ubiquitylation	K406	0.017	0.444	_VK(gl)EALLR_
NGLY1	Ubiquitylation	K419	0.400	1.081	_DTINGLNK(gl)QR_
NPRL3	Ubiquitylation	K83		-0.087	_SEMCGQK(gl)FELK_
NPRL3	Ubiquitylation	K287		-0.584	_VIK(gl)TTSAVK_
PCSK6	Ubiquitylation	K573		-0.143	_SQLLAK(gl)R_
PITHD1	Ubiquitylation	K142	-0.302		_DLTGELEYATK(gl)ISR_
SUCO	Phosphorylation	S1233	1.063	0.911	_SKS(ph)LQLTGK_
SUN2	Ubiquitylation	K379		-0.225	_EAALK(gl)EDFRR_
TXNL1	Ubiquitylation	K28		0.184	_LAVVK(gl)FTMR_
TXNL1	Ubiquitylation	K102	-1.349	0.032	_IDQYQGADAVGLEEK(gl)IK_
TXNL1	Ubiquitylation	K104	-1.725	-1.269	_IK(gl)QHLENDPGSNEDTDIPK_
TXNL1	Ubiquitylation	K181	-0.170	-0.319	_LYSMK(gl)FQGPDNGQGPK_
XRCC1	Ubiquitylation	K143	0.287	0.218	_VK(gl)IVCSQPYSK_
XRCC1	Ubiquitylation	K183	0.349		_VTVTK(gl)LGQFR_
XRCC1	Phosphorylation	S240	-1.676		_TSPVTASDPAGPSYAAATLQASSAASSAS(ph)PVSR_
XRCC1	Phosphorylation	T249	-0.792	-0.550	_AIGST(ph)SKPQESPKGK_
XRCC1	Phosphorylation	S255	-1.174	-0.626	_AIGSTSKPQES(ph)PK_
XRCC1	Phosphorylation	S280	0.316	0.913	_KTPSKPPAQLS(ph)PSVPK_
XRCC1	Phosphorylation	S282		0.731	_KTPSKPPAQLS(ph)PSVPK_
XRCC1	Ubiquitylation	K355	0.580		_DK(gl)ALELGAK_
XRCC1	Phosphorylation	S460	-1.302	-0.863	_TKPTQAAGPS(ph)SPQKPPT(ph)PEETK_
XRCC1	Phosphorylation	S461	-2.007	-4.025	_TKPTQAAGPSS(ph)PQKPPTPEETK_
XRCC1	Phosphorylation	T467	-1.175	-1.061	_TKPTQAAGPSS(ph)PQKPPT(ph)PEETK_
XRCC1	Phosphorylation	T471	-1.661		_TKPTQAAGPSS(ph)PQKPPT(ph)PEETK_
XRCC1	Phosphorylation	S475	-0.043	0.033	_AAS(ph)PVLQEDIDIEGVQSEGQDNGAEDSGDTEDELRR_
ZZEF1	Phosphorylation	S1518	-0.118		_LPSSSGLPAADVSPATAEEPLS(ph)PSTPTR_
ZZEF1	Ubiquitylation	K2087	-0.388		_AVTPSPEQVFAECSQK(gl)R_
ZZEF1	Ubiquitylation	K2291		0.324	_AVIVDVK(gl)TR_
ZZEF1	Phosphorylation	S2443	-0.420	0.073	_GDREEEVERPVS(ph)SPGDPEQK_
ZZEF1	Phosphorylation	S2444	-0.224	0.031	_GDREEEVERPVSS(ph)PGDPEQK_
ZZEF1	Ubiquitylation	K2490		1.588	_AIYELQMK(gl)K_
ZZEF1	Ubiquitylation	K2491		1.258	_AIYELQMKK(gl)_
ZZEF1	Ubiquitylation	K2525		1.124	_WQPSK(gl)SLR_