RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
PPP1CA	3	2.150	-0.860
PPP1CA	3	2.150	-0.860	-0.250	0.634	0.981	-0.108	0.171
TIMELESS	2	-0.820	1.340	-0.115	-0.810	1.489	0.880	0.424
JMJD6	1	-2.420	4.570
TAB1	1	1.890	-0.670
TAB1	1	1.890	-0.670	1.657
DICER1	1	-0.810	0.800	1.748			-0.207	-0.634
EIF4E	1	-2.250	4.200				0.590	0.156
EIF4E	1	-2.250	4.200	0.369
SP3	1	2.510	-0.930	-0.403			0.807	0.836
EIF4EBP1	1	2.050	-1.320
SREBF1	0	0.540	-0.490
SREBF1	0	0.540	-0.490
FGFR1	0	0.210	0.150
EP300	0	-1.210	1.320	-1.089			-1.694	-0.723
ASAH1	0	-0.300	0.340
HOXA5	0	0.030	-0.190					-0.887
GLI3	0	-0.980	1.650
BMPR1A	0	0.020	-0.130
WNT5A	0
HES1	0	-0.940	0.860
FOXP1	0	-1.070	2.200
PROX1	0	0.800	-0.550
ARG1	0	-0.170	0.640					-4.678
TSHZ3	0	0.170	0.210
KDR	0	0.860	-0.680
ALDH1A2	0	-1.010	0.740
FOXA1	0	1.190	-0.010
LAMA5	0	-1.280	1.860	1.257			0.402	0.337
NKX2-1	0	-0.730	0.480		0.174	0.236
NKX2-1	0	-0.730	0.480				-0.123
TMTC3	0	0.970	-0.480				-1.039	-0.412
EGFR	0	-0.580	0.520				0.513	0.090
NFIB	0	-1.030	1.080	-0.711	0.025	0.306		1.031
SIM2	0	1.780	-1.300
CTNNB1	0	0.490	-0.230
CTNNB1	0	0.490	-0.230	-0.415			0.628	0.215
DHCR7	0			-0.384			0.267	0.288
SMAD2	0
SP1	0			0.404			0.333	0.650
ADA	0	0.340	-0.830

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ADA	Ubiquitylation	K312		0.123	_STLDTDYQMTK(gl)R_
ALDH1A2	Ubiquitylation	K365		-1.744	_VVGSPFDPTTEQGPQIDK(gl)K_
ALDH1A2	Ubiquitylation	K366		-1.744	_VVGSPFDPTTEQGPQIDK(gl)K_
ALDH1A2	Ubiquitylation	K507		0.123	_EYSEVK(gl)TVTVK_
ASAH1	Ubiquitylation	K461		0.139	_ESLDVYELDAK(gl)QGR_
BMPR1A	Ubiquitylation	K232	-0.391	0.172	_TIAK(gl)QIQMVR_
BMPR1A	Ubiquitylation	K477	0.265	-0.134	_EVVCVK(gl)R_
CTNNB1	Ubiquitylation	K158		-1.265	_AIPELTK(gl)LLNDEDQVVVNK_
CTNNB1	Ubiquitylation	K180	-0.546	-0.636	_AAVM(ox)VHQLSK(gl)K_
CTNNB1	Ubiquitylation	K181	-0.717	-0.729	_AAVMVHQLSKK(gl)_
CTNNB1	Phosphorylation	S191	-0.024	0.129	_S(ph)PQMVSAIVR_
CTNNB1	Ubiquitylation	K435		-0.350	_NK(gl)MM(ox)VCQVGGIEALVR_
CTNNB1	Ubiquitylation	K496		-1.262	_LHYGLPVVVK(gl)_
CTNNB1	Phosphorylation	S552	1.233	1.224	_RTS(ph)MGGTQQQFVEGVR_
CTNNB1	Phosphorylation	T556	1.275	0.995	_RTSM(ox)GGT(ph)QQQFVEGVR_
CTNNB1	Ubiquitylation	K671	-0.941	-0.934	_MSEDKPQDYK(gl)K_
DHCR7	Ubiquitylation	K4		-0.994	_(ac)AAK(gl)SQPNIPK_
DHCR7	Ubiquitylation	K13	-0.522	0.107	_AK(gl)SLDGVTNDR_
DHCR7	Phosphorylation	S14	0.877	0.606	_S(ph)LDGVTNDR_
DHCR7	Ubiquitylation	K88	-0.930	-0.171	_LSDIWAK(gl)TPPITR_
EGFR	Phosphorylation	T693	0.486	-0.139	_ELVEPLT(ph)PSGEAPNQALLR_
EGFR	Phosphorylation	S991		-0.041	_MHLPS(ph)PTDSNFYR_
EIF4E	Ubiquitylation	K147	-0.433	0.065	_WLITLNK(gl)QQR_
EIF4EBP1	Phosphorylation	Y34	-1.060		_RVVLGDGVQLPPGDY(ph)STTPGGTLFS(ph)TTPGGTR_
EIF4EBP1	Phosphorylation	S35		-0.849	_RVVLGDGVQLPPGDYS(ph)TTPGGTLFS(ph)TTPGGTR_
EIF4EBP1	Phosphorylation	T37	-0.768	-0.583	_RVVLGDGVQLPPGDYSTT(ph)PGGTLFSTT(ph)PGGTR_
EIF4EBP1	Phosphorylation	T41	-3.655	-0.903	_RVVLGDGVQLPPGDYST(ph)TPGGT(ph)LFSTTPGGTR_
EIF4EBP1	Phosphorylation	S44		-0.796	_VVLGDGVQLPPGDYSTTPGGTLFS(ph)T(ph)TPGGTR_
EIF4EBP1	Phosphorylation	T45		-0.727	_VVLGDGVQLPPGDYSTTPGGTLFS(ph)T(ph)TPGGTR_
EIF4EBP1	Phosphorylation	T46	-0.890	-0.817	_RVVLGDGVQLPPGDYSTT(ph)PGGTLFSTT(ph)PGGTR_
EIF4EBP1	Phosphorylation	S65	0.522	0.478	_NS(ph)PVTKT(ph)PPR_
EIF4EBP1	Phosphorylation	T68	-1.621	-2.402	_NS(ph)PVT(ph)KTPPRDLPTIPGVTSPSSDEPPMEASQSHLR_
EIF4EBP1	Ubiquitylation	K69	-1.171	-1.547	_NSPVTK(gl)TPPR_
EIF4EBP1	Phosphorylation	T70	-0.702	-0.017	_NSPVTKT(ph)PPR_
EIF4EBP1	Phosphorylation	T77	-1.921	-1.898	_TPPRDLPT(ph)IPGVTSPSSDEPPMEASQSHLR_
EIF4EBP1	Phosphorylation	T82	1.253		_DLPTIPGVT(ph)SPSSDEPPMEASQSHLR_
EIF4EBP1	Phosphorylation	S83	1.211	0.339	_DLPTIPGVTS(ph)PSSDEPPMEASQSHLR_
EIF4EBP1	Phosphorylation	S96		-1.541	_DLPTIPGVTSPSSDEPPMEASQS(ph)HLRNSPEDK_
EIF4EBP1	Phosphorylation	S101	-1.900	-1.976	_DLPTIPGVTSPSSDEPPMEASQSHLRNS(ph)PEDK_
EP300	Phosphorylation	S1038	-0.672	-0.349	_TEIKEEEDQPSTSATQSS(ph)PAPGQSK_
EP300	Phosphorylation	S1726	0.994	0.627	_LGLGLDDESNNQQAAATQS(ph)PGDSRR_
EP300	Phosphorylation	S2328	-1.092	0.725	_PQSQPPHSSPS(ph)PR_
FGFR1	Ubiquitylation	K510	1.047	-0.221	_VTK(gl)VAVK_
FOXA1	Phosphorylation	S331	-0.760	-0.866	_TGQLEGAPAPGPAAS(ph)PQTLDHSGATATGGASELK_
FOXP1	Phosphorylation	S442	1.013	0.678	_RYS(ph)DKYNVPISSADIAQNQEFYK_
GLI3	Phosphorylation	S664	-0.582	-0.252	_S(ph)PGRPTQGALGEQQDLSNTTSK_
HES1	Ubiquitylation	K66		0.212	_TLILDALK(gl)K_
HES1	Ubiquitylation	K67		0.212	_TLILDALK(gl)K_
HES1	Ubiquitylation	K109	-0.891		_AQMTAALSTDPSVLGK(gl)YR_
JMJD6	Ubiquitylation	K167	-0.059	-0.130	_FFTDDLFQYAGEK(gl)R_
JMJD6	Ubiquitylation	K219		-0.251	_ELIK(gl)VTR_
KDR	Ubiquitylation	K1064		-1.119	_DIYK(gl)DPDYVR_
LAMA5	Ubiquitylation	K255		1.313	_EFTK(gl)ATNVR_
NFIB	Phosphorylation	S294		-1.873	_TISIDENM(ox)EPSPTGDFYPSPS(ph)SPAAGSR_
NFIB	Phosphorylation	S295	-1.280		_TISIDENMEPSPTGDFYPSPSS(ph)PAAGSR_
NFIB	Phosphorylation	S300	-1.728		_TISIDENM(ox)EPSPTGDFYPSPSSPAAGS(ph)R_
NFIB	Phosphorylation	S311	1.021	0.671	_DQDMS(ph)SPTTM(ox)K_
NFIB	Phosphorylation	S312	0.764	0.746	_DQDMSS(ph)PTTMK_
NFIB	Phosphorylation	T314		0.827	_DQDMSSPT(ph)TMK_
NFIB	Phosphorylation	S325		0.852	_KPEKPLFS(ph)SASPQDSSPR_
NFIB	Phosphorylation	S328	1.295	0.637	_KPEKPLFSSAS(ph)PQDSSPR_
NFIB	Phosphorylation	S332	-0.428	-1.102	_KPEKPLFSSASPQDS(ph)SPR_
NFIB	Phosphorylation	S333	-0.428		_KPEKPLFSSASPQDS(ph)SPR_
PPP1CA	Ubiquitylation	K6	0.594	0.414	_(ac)SDSEK(gl)LNLDSIIGR_
PPP1CA	Ubiquitylation	K50	-0.131	0.478	_GLCLK(gl)SR_
PPP1CA	Ubiquitylation	K150	0.321	0.619	_IYGFYDECK(gl)RR_
PPP1CA	Ubiquitylation	K156	0.883	1.047	_YNIK(gl)LWK_
PPP1CA	Ubiquitylation	K247	0.313		_FLHK(gl)HDLDLICR_
PPP1CA	Ubiquitylation	K269	2.628	2.591	_AHQVVEDGYEFFAK(gl)R_
PROX1	Phosphorylation	S511	0.460	0.502	_DRAS(ph)PESLDLTR_
SIM2	Ubiquitylation	K51		-0.897	_LTTSYLK(gl)MR_
SMAD2	Phosphorylation	T8	-0.896	-0.885	_(ac)SSILPFT(ph)PPVVK_
SMAD2	Ubiquitylation	K13	-0.058		_(ac)SSILPFTPPVVK(gl)R_
SP1	Phosphorylation	S2	0.834	1.114	_(ac)S(ph)DQDHSMDEMTAVVK_
SP1	Phosphorylation	S7	0.586	0.217	_(ac)SDQDHS(ph)MDEMTAVVK_
SP1	Phosphorylation	S56	-0.154		_SSSTGSSSSTGGGGQES(ph)QPSPLALLAATCSR_
SP1	Phosphorylation	S59	-0.217	-0.135	_SSSTGSSSSTGGGGQESQPS(ph)PLALLAATCSR_
SREBF1	Ubiquitylation	K321		-0.637	_LAAGSK(gl)APASAQSR_
SREBF1	Ubiquitylation	K579	-1.649	0.673	_K(gl)QADLDLAR_
TAB1	Phosphorylation	S7	-0.170	0.140	_S(ph)LLQSEQQPSWTDDLPLCHLSGVGSASNR_
TAB1	Phosphorylation	S16	-0.138	0.069	_SLLQSEQQPS(ph)WTDDLPLCHLSGVGSASNR_
TAB1	Ubiquitylation	K186	-1.015		_SYSADGK(gl)GTESHPPEDSWLK_
TAB1	Ubiquitylation	K371	0.032		_LSQLGLDAGK(gl)IK_
TAB1	Ubiquitylation	K373		-0.007	_LSQLGLDAGKIK(gl)_
TIMELESS	Ubiquitylation	K528		-0.868	_GNLVVQNK(gl)QK_
TIMELESS	Ubiquitylation	K530		-0.868	_GNLVVQNK(gl)QK_
TIMELESS	Phosphorylation	S1087	0.076	-0.254	_LS(ph)PTQLR_
TIMELESS	Phosphorylation	S1149	1.556	1.776	_KAGLAS(ph)PEEEDAVGKEPLK_
TIMELESS	Phosphorylation	S1173		0.502	_RQLLDS(ph)DEEQEEDEGR_
TMTC3	Ubiquitylation	K751		0.139	_GDILMNQK(gl)K_
TMTC3	Ubiquitylation	K752		0.139	_GDILMNQK(gl)K_
TSHZ3	Phosphorylation	S333	0.171		_KASLELELPSS(ph)PDSTGGTPK_
TSHZ3	Phosphorylation	S461		-0.148	_VQSVPLAATTFTSPSNTPAS(ph)ISPK_
TSHZ3	Phosphorylation	S463	-0.740	-0.907	_VQSVPLAATTFTSPSNTPASIS(ph)PK_
WNT5A	Ubiquitylation	K268		-0.304	_VGDALK(gl)EK_