RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
GSK3B	2	1.020	-0.870				-1.128	1.091
INSR	2	-0.850	0.830				1.143	0.785
PBX2	2	-0.170	0.670	-0.186		-0.124
FHL1	1	-0.670	-0.090	-0.060	-0.291	0.491	0.677	-0.269
PNPLA6	1	-1.740	3.440				0.629	0.748
CUL1	1	0.630	-0.610	-0.314	0.662	2.069	0.342	0.118
PALB2	1	-1.420	3.110
HOXA13	1	-1.850	3.840		-0.027	0.427
HOXA13	1	-1.850	3.840	-1.413				0.651
MED1	1	0.780	-0.520				-1.530	-0.219
IGF1R	1	-0.490	0.750				1.476	0.714
COL18A1	1	-1.230	1.530				1.871	0.304
PDGFA	1	0.190	-0.340		-2.109	1.885
HCCS	0	-0.180	-0.210				0.095	0.087
TLE2	0	0.520	-0.890				-0.204	-0.609
TLE2	0	0.520	-0.890	0.116
DGCR2	0	0.970	-0.240
TGM1	0	1.120	0.000					-3.061
SEMA6A	0	0.490	0.020
ABLIM1	0	0.270	-0.170
NRP1	0	0.880	-0.670				0.909	0.353
CRKL	0	0.290	-0.620
EP300	0	-1.210	1.320	-1.089			-1.694	-0.723
BMP7	0
JAG1	0	-0.260	0.070
FGD1	0	-0.610	1.420
MAPK3	0
EYA1	0	-0.440	-0.140
AES	0	-0.830	1.120	-1.378
GMNN	0	0.620	-1.000
TGFB3	0	0.900	-0.540
LAMA5	0	-1.280	1.860	1.257			0.402	0.337
EPHB2	0	-0.630	0.780					0.221
EPHB2	0	-0.630	0.780
TBX3	0	-0.160	0.160
NKX2-1	0	-0.730	0.480		0.174	0.236
NKX2-1	0	-0.730	0.480				-0.123
TLE3	0	0.500	-0.730	-1.130
TLE3	0	0.500	-0.730				-0.204	-0.609
BRAF	0
ITGA2	0	-0.370	0.660				0.847	0.435
BCL2	0	0.910	-0.740
RELA	0	-1.130	1.600	0.793
SMARCC1	0	0.140	0.090	0.553	0.112	0.584	0.137	0.136
HRAS	0	1.470	-0.520
FOXC2	0	0.270	-0.510	-1.217	-0.424	0.659
PBX1	0	-0.600	0.280
PBX1	0	-0.600	0.280	-0.186		-0.124
PTCH1	0	0.630	-0.690
EVL	0	0.030	-0.430	0.413			0.435	0.673
EVL	0	0.030	-0.430
TLE1	0	0.270	0.000	0.116
E2F4	0	0.930	-0.810

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ABLIM1	Phosphorylation	S216		0.022	_DCLCQLCAQPMSSS(ph)PK_
ABLIM1	Phosphorylation	S352		0.601	_LRPTRTS(ph)SESIYSR_
ABLIM1	Phosphorylation	S431	-0.140	0.041	_TLS(ph)PTPSAEGYQDVR_
ABLIM1	Phosphorylation	S435	-0.245	-0.256	_TLS(ph)PTPS(ph)AEGYQDVR_
ABLIM1	Phosphorylation	S452	0.589	0.925	_STS(ph)QGSINSPVYSR_
ABLIM1	Phosphorylation	S587	0.959	1.394	_RSS(ph)GREEDDEELLR_
ABLIM1	Phosphorylation	S655	0.456	0.590	_TAS(ph)LPGYGR_
ABLIM1	Phosphorylation	S706	-0.408	0.044	_GVS(ph)MPNMLEPK_
AES	Ubiquitylation	K54		0.449	_LASEK(gl)SEMQR_
AES	Ubiquitylation	K83		0.433	_QAEIVK(gl)R_
AES	Ubiquitylation	K112	-1.428	-0.846	_AK(gl)QVTAPELNSIIR_
BCL2	Ubiquitylation	K22	1.480		_YIHYK(gl)LSQR_
BMP7	Ubiquitylation	K178		-0.107	_IYK(gl)DYIR_
BRAF	Phosphorylation	S151	-0.685	-0.629	_SNPKS(ph)PQKPIVR_
BRAF	Phosphorylation	S363	-0.023	-0.241	_S(ph)SSAPNVHINTIEPVNIDDLIR_
BRAF	Phosphorylation	S365	-0.286	0.012	_SSS(ph)APNVHINTIEPVNIDDLIR_
BRAF	Phosphorylation	S399	-0.890	-0.527	_GDGGSTTGLS(ph)ATPPASLPGSLTNVK_
BRAF	Phosphorylation	T401	-0.525		_GDGGSTTGLSAT(ph)PPASLPGSLTNVK_
BRAF	Phosphorylation	S446	0.246	0.349	_RDS(ph)SDDWEIPDGQITVGQR_
BRAF	Phosphorylation	S447	0.579	0.623	_RDSS(ph)DDWEIPDGQITVGQR_
BRAF	Phosphorylation	S729	0.208	0.219	_SAS(ph)EPSLNR_
CRKL	Phosphorylation	S41		0.868	_DS(ph)STCPGDYVLSVSENSR_
CRKL	Phosphorylation	S107	-0.818	-1.177	_YPS(ph)PPMGSVSAPNLPTAEDNLEYVR_
CUL1	Ubiquitylation	K262	0.119		_ESTEFLQQNPVTEYMK(gl)K_
CUL1	Ubiquitylation	K263	0.119	-0.055	_ESTEFLQQNPVTEYMK(gl)K_
CUL1	Ubiquitylation	K410	0.250	0.326	_FINNNAVTK(gl)MAQSSSK_
CUL1	Ubiquitylation	K417		0.761	_MAQSSSK(gl)SPELLAR_
CUL1	Ubiquitylation	K468	1.237		_FYAK(gl)MLAK_
CUL1	Ubiquitylation	K503		0.665	_QACGFEYTSK(gl)LQR_
CUL1	Ubiquitylation	K769	0.292		_VDGEK(gl)DTYSYLA_
DGCR2	Ubiquitylation	K179		-0.352	_SFGWK(gl)DQR_
DGCR2	Ubiquitylation	K266		0.036	_SSFLCK(gl)R_
E2F4	Phosphorylation	T14		-2.100	_(ac)AEAGPQAPPPPGT(ph)PSR_
E2F4	Phosphorylation	S16	-2.158	-1.655	_(ac)AEAGPQAPPPPGTPS(ph)R_
EP300	Phosphorylation	S1038	-0.672	-0.349	_TEIKEEEDQPSTSATQSS(ph)PAPGQSK_
EP300	Phosphorylation	S1726	0.994	0.627	_LGLGLDDESNNQQAAATQS(ph)PGDSRR_
EP300	Phosphorylation	S2328	-1.092	0.725	_PQSQPPHSSPS(ph)PR_
EPHB2	Ubiquitylation	K578	-0.752	-0.618	_QSPEDVYFSK(gl)SEQLKPLK_
EPHB2	Ubiquitylation	K583	0.445	0.124	_SEQLK(gl)PLK_
EPHB2	Ubiquitylation	K617	0.339		_QK(gl)VIGAGEFGEVYK_
EPHB2	Ubiquitylation	K649	-1.219		_TLK(gl)AGYTEK_
EPHB2	Phosphorylation	S776	-0.147	-0.171	_FLEDDTS(ph)DPTYTSALGGK_
EPHB2	Phosphorylation	S897		0.000	_LPS(ph)TSGSEGVPFR_
EPHB2	Phosphorylation	T898	-0.329	0.424	_LPST(ph)SGSEGVPFR_
EVL	Phosphorylation	S246	-0.996	0.095	_VQRPEDASGGSS(ph)PSGTSK_
EVL	Phosphorylation	S329	0.147	0.356	_S(ph)NSVEKPVSSILSR_
EVL	Phosphorylation	S331	0.246	0.219	_SNS(ph)VEKPVSSILSR_
EVL	Phosphorylation	S349	0.089	1.311	_TPSVAKS(ph)PEAK_
EVL	Ubiquitylation	K483	-1.901		_GSTIETEQKEDKGEDSEPVTSK(gl)ASSTSTPEPTR_
EYA1	Ubiquitylation	K513		-0.108	_NNVGGLLGPAK(gl)R_
EYA1	Ubiquitylation	K587		-1.219	_IGK(gl)ESCFER_
FGD1	Phosphorylation	S48	-0.284		_RGS(ph)GSALGGPLDPQFVGPSDTSLGAAPGHR_
FGD1	Phosphorylation	S50	-0.140	-0.134	_RGSGS(ph)ALGGPLDPQFVGPSDTSLGAAPGHR_
FGD1	Phosphorylation	S82		-0.199	_VLPCGPS(ph)PQHHR_
FGD1	Phosphorylation	S114	-0.776	-0.924	_S(ph)LSLDPGQSLEPHPEGPQR_
FGD1	Phosphorylation	S116	-0.758	-0.450	_SLS(ph)LDPGQSLEPHPEGPQR_
FGD1	Phosphorylation	S135		-0.194	_LRS(ph)DPGPPTETPSQRPSPLK_
FGD1	Phosphorylation	S954	-0.708	-1.116	_GDTFCPGPTLSEDREMEEAPVAALGATAEPPES(ph)PQTR_
FHL1	Ubiquitylation	K131	0.708	2.028	_ILCNK(gl)CTTR_
FOXC2	Phosphorylation	S6	0.325	0.055	_YS(ph)VSSPNSLGVVPYLGGEQSYYR_
FOXC2	Phosphorylation	S235		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXC2	Phosphorylation	S241		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXC2	Phosphorylation	S259	-0.376	-0.198	_IES(ph)PDSSSSSLSSGSSPPGSLPSAR_
FOXC2	Phosphorylation	S320	0.313	0.178	_GS(ph)PQSAAAELSSGLLASAAASSR_
FOXC2	Phosphorylation	S323		0.347	_GSPQS(ph)AAAELSSGLLASAAASSR_
FOXC2	Ubiquitylation	K554	-0.030	0.013	_TSGAFVYDCSK(gl)F_
GMNN	Ubiquitylation	K50	-0.622	-0.151	_ENELSAGLSK(gl)R_
GMNN	Phosphorylation	S63	0.028	-0.793	_NDHLTSTTS(ph)SPGVIVPESSENK_
GSK3B	Phosphorylation	S9	-0.483	0.010	_TTS(ph)FAESCKPVQQPSAFGSMK_
GSK3B	Ubiquitylation	K85		-0.204	_LCDSGELVAIK(gl)K_
GSK3B	Ubiquitylation	K86		-0.204	_LCDSGELVAIK(gl)K_
GSK3B	Phosphorylation	S215	0.296	0.477	_GEPNVS(ph)YICSR_
GSK3B	Phosphorylation	Y216	0.356	0.376	_GEPNVSY(ph)ICSR_
GSK3B	Phosphorylation	T390	2.800	2.527	_IQAAAST(ph)PTNATAASDANTGDR_
HOXA13	Ubiquitylation	K335	0.431	0.162	_VQLK(gl)ELER_
HRAS	Ubiquitylation	K170	-1.005		_K(gl)LNPPDESGPGCMSCK_
IGF1R	Ubiquitylation	K47		1.146	_NDYQQLK(gl)R_
IGF1R	Ubiquitylation	K1033	5.779		_VAIK(gl)TVNEAASMR_
IGF1R	Ubiquitylation	K1168	0.191		_K(gl)GGKGLLPVR_
IGF1R	Ubiquitylation	K1171	0.232		_GGK(gl)GLLPVR_
INSR	Ubiquitylation	K1022	-0.603		_EK(gl)ITLLR_
INSR	Ubiquitylation	K1047	0.305	0.711	_DIIK(gl)GEAETR_
INSR	Ubiquitylation	K1057	0.482	0.484	_VAVK(gl)TVNESASLR_
INSR	Ubiquitylation	K1352	1.606	2.754	_DGGSSLGFK(gl)R_
JAG1	Ubiquitylation	K1142	-0.783		_HGANTVPIKDYENK(gl)_
LAMA5	Ubiquitylation	K255		1.313	_EFTK(gl)ATNVR_
MAPK3	Phosphorylation	Y204	-0.807	-2.487	_IADPEHDHTGFLTEY(ph)VATR_
MAPK3	Ubiquitylation	K289		-0.608	_NYLQSLPSKTK(gl)_
MED1	Phosphorylation	S664		3.368	_DNPAQDFSTLYGSS(ph)PLER_
MED1	Phosphorylation	S771	-1.422		_LSS(ph)SDSIGPDVTDILSDIAEEASKLPSTSDDCPAIGTPLR_
MED1	Phosphorylation	T1051	-1.201	-1.247	_SQT(ph)PPGVATPPIPK_
MED1	Phosphorylation	T1057		-1.294	_SQT(ph)PPGVAT(ph)PPIPK_
MED1	Phosphorylation	S1155	0.689		_NSSQSGGKPGS(ph)SPITK_
MED1	Phosphorylation	S1156	0.829	1.055	_NSSQSGGKPGSS(ph)PITK_
MED1	Phosphorylation	S1192		-0.792	_PSSLM(ox)NPSLSKPNIS(ph)PSHSRPPGGSDK_
MED1	Phosphorylation	S1223	1.061	1.013	_AKS(ph)PISSGSGGSHM(ox)SGTSSSSGM(ox)K_
MED1	Phosphorylation	S1433	-0.191		_NYGS(ph)PLISGSTPK_
PALB2	Phosphorylation	S190	1.462	1.104	_NPARS(ph)PVTEIR_
PALB2	Phosphorylation	S387		-1.951	_SLS(ph)LEATS(ph)PLSAEK_
PALB2	Phosphorylation	S660	0.033	-0.373	_EGSCIFPEELS(ph)PK_
PBX1	Ubiquitylation	K164		-0.541	_SK(gl)LAQIR_
PBX1	Ubiquitylation	K195	-1.614		_TRPISPK(gl)EIER_
PBX2	Ubiquitylation	K164		-0.541	_SK(gl)LAQIR_
PTCH1	Ubiquitylation	K904		-0.390	_DKPIDISQLTK(gl)QR_
SEMA6A	Ubiquitylation	K259		-0.265	_VAQVCK(gl)NDMGGSQR_
SMARCC1	Phosphorylation	S310	-0.047	0.123	_NEEPVRS(ph)PERR_
SMARCC1	Phosphorylation	S328	-0.755	-0.358	_KHS(ph)PS(ph)PPPPTPTESR_
SMARCC1	Phosphorylation	S330	-0.755	-1.491	_KHS(ph)PS(ph)PPPPTPTESR_
SMARCC1	Ubiquitylation	K588	-0.831		_SPQVPAAQQMLNFPEK(gl)NK_
SMARCC1	Ubiquitylation	K590	-0.737		_NK(gl)EKPVDLQNFGLR_
SMARCC1	Ubiquitylation	K592	-0.509		_EK(gl)PVDLQNFGLR_
SMARCC1	Ubiquitylation	K608	-0.342	0.588	_TDIYSK(gl)K_
SMARCC1	Ubiquitylation	K609	-0.053	0.520	_TDIYSKK(gl)_
SMARCC1	Ubiquitylation	K716	0.001		_VASAAAK(gl)AALEEFSR_
SMARCC1	Ubiquitylation	K882	0.402		_AK(gl)HLAAVEER_
TBX3	Ubiquitylation	K466	-2.519		_EGTAPAK(gl)VEEAR_
TGFB3	Ubiquitylation	K50		-0.557	_GQILSK(gl)LR_
TLE1	Phosphorylation	S286	0.242	0.160	_DASSS(ph)PASTASSASSTSLK_
TLE2	Phosphorylation	S213	0.308	0.467	_ESSANNSVS(ph)PSESLR_
TLE2	Phosphorylation	S286	0.242	0.160	_DASSS(ph)PASTASSASSTSLK_
TLE2	Phosphorylation	T295	-0.221	-0.058	_DAPT(ph)SPASVASSSSTPSSK_
TLE2	Phosphorylation	S296	-0.181	-0.019	_DAPTS(ph)PASVASSSST(ph)PSSK_
TLE2	Phosphorylation	S305		-0.995	_DAPTS(ph)PASVASSSS(ph)TPSSK_
TLE2	Phosphorylation	T306	-0.680	-0.965	_DAPTS(ph)PASVASSSST(ph)PSSK_
TLE2	Phosphorylation	T338	-1.514	-1.552	_NDAPT(ph)PGTSTT(ph)PGLR_
TLE2	Phosphorylation	T341		-1.951	_NDAPT(ph)PGT(ph)STTPGLR_
TLE2	Phosphorylation	T344	-1.034	-0.386	_NDAPTPGTSTT(ph)PGLR_
TLE3	Phosphorylation	S213	0.308	0.467	_ESSANNSVS(ph)PSESLR_
TLE3	Ubiquitylation	K230	-0.057	-0.119	_GSADYSMEAK(gl)KR_
TLE3	Ubiquitylation	K231	-0.160	-0.119	_GSADYSMEAKK(gl)_
TLE3	Phosphorylation	T295	-0.221	-0.058	_DAPT(ph)SPASVASSSSTPSSK_
TLE3	Phosphorylation	S296	-0.181	-0.019	_DAPTS(ph)PASVASSSST(ph)PSSK_
TLE3	Phosphorylation	S305		-0.995	_DAPTS(ph)PASVASSSS(ph)TPSSK_
TLE3	Phosphorylation	T306	-0.680	-0.965	_DAPTS(ph)PASVASSSST(ph)PSSK_
TLE3	Ubiquitylation	K314	-0.038		_DLGHNDK(gl)SSTPGLK_
TLE3	Ubiquitylation	K321	-0.502		_SSTPGLK(gl)SNTPTPR_
TLE3	Phosphorylation	T338	-1.514	-1.552	_NDAPT(ph)PGTSTT(ph)PGLR_
TLE3	Phosphorylation	T341		-1.951	_NDAPT(ph)PGT(ph)STTPGLR_
TLE3	Phosphorylation	T344	-1.034	-0.386	_NDAPTPGTSTT(ph)PGLR_
TLE3	Ubiquitylation	K348	-1.596		_SMPGK(gl)PPGMDPIASALR_
TLE3	Ubiquitylation	K508	0.853		_HVYTGGK(gl)GCVK_
TLE3	Ubiquitylation	K522	-0.788		_IWDISQPGSK(gl)SPISQLDCLNR_