RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
JUN	3	-0.930	0.930			-0.126
MKL2	2	1.160	-0.390
AK2	1	0.380	-0.820		1.981		0.248	-0.715
CCND1	1	-1.820	3.470
SOD2	1	-0.340	0.140		2.161		-0.330
HMGCS1	1	-1.450	3.080	-0.209				0.030
ICMT	1	-2.180	4.300				-0.277	-0.231
ACADM	1	-0.780	0.040	0.342	1.733	-1.179	1.338	1.228
MED1	1	0.780	-0.520				-1.530	-0.219
PRKCSH	1	0.550	0.060				0.459	0.419
SP3	1	2.510	-0.930	-0.403			0.807	0.836
CADM1	1	-0.550	0.210		1.891		-0.186	0.114
IGF2R	1	2.250	-1.150				-0.107	0.125
JARID2	0	-1.180	1.730				-1.360	-1.367
PKD1	0	-0.900	0.980
CPS1	0	-0.030	-0.030
RB1CC1	0	-0.320	0.680
RB1CC1	0	-0.320	0.680		-1.155	-0.488
SEC63	0	0.620	-0.720	0.490			0.453	0.473
SEC63	0	0.620	-0.720
ASNS	0	-0.720	0.410	-0.182			1.244	1.020
ACAT1	0	-0.180	0.310	-0.044	0.452	-0.353	0.411	0.354
EP300	0	-1.210	1.320	-1.089			-1.694	-0.723
LSR	0						0.373	-0.563
MET	0	-0.010	-0.330
COBL	0	-1.440	1.820
MAN2A1	0	-0.240	0.680				0.273	0.902
HES1	0	-0.940	0.860
PROX1	0	0.800	-0.550
ARG1	0	-0.170	0.640					-4.678
SMARCA4	0	-0.810	1.520	0.629	-0.158	0.141	0.337	0.333
ALDH1A2	0	-1.010	0.740
GATA6	0	-0.210	-0.020	-0.027			-0.582	-0.834
ALDH9A1	0	-0.700	0.710	0.196
EGFR	0	-0.580	0.520				0.513	0.090
ARID5B	0	0.580	-0.330
UPF2	0	0.020	-0.140				-0.668	-0.131
CEBPG	0	-1.150	1.620
AK4	0	-0.090	0.170
AK4	0	-0.030	0.550
AK4	0	-0.090	0.170				0.683
AK4	0	-0.030	0.550				0.683
ARF6	0	0.210	-0.560				0.456
SMAD3	0	-1.560	1.800
SMAD3	0	0.270	-0.340
TK1	0	0.610	-0.460
CTNNB1	0	0.490	-0.230
CTNNB1	0	0.490	-0.230	-0.415			0.628	0.215
RELA	0	-1.130	1.600	0.793
STAT5B	0	0.670	-0.960
SP1	0			0.404			0.333	0.650
NF1	0	1.000	-0.500				0.444	-0.190
ADA	0	0.340	-0.830
ATG7	0	-0.140	0.720	0.708
PHF2	0	-0.170	0.470				0.652	0.449

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ADA	Ubiquitylation	K312		0.123	_STLDTDYQMTK(gl)R_
AK2	Ubiquitylation	K28	-2.435	-1.363	_AVLLGPPGAGK(gl)GTQAPR_
AK2	Ubiquitylation	K63		-0.244	_AMVASGSELGKK(gl)_
AK2	Ubiquitylation	K65		-0.229	_LK(gl)ATMDAGK_
AK4	Ubiquitylation	K3		-1.321	_(ac)AK(gl)QYIEK_
ALDH1A2	Ubiquitylation	K365		-1.744	_VVGSPFDPTTEQGPQIDK(gl)K_
ALDH1A2	Ubiquitylation	K366		-1.744	_VVGSPFDPTTEQGPQIDK(gl)K_
ALDH1A2	Ubiquitylation	K507		0.123	_EYSEVK(gl)TVTVK_
ALDH9A1	Ubiquitylation	K54	-1.628		_VEPADASGTEK(gl)AFEPATGR_
ALDH9A1	Ubiquitylation	K92	0.502	0.859	_IWSQK(gl)SGMER_
ARID5B	Phosphorylation	S264	0.496	0.623	_RDS(ph)FSGVK_
ASNS	Ubiquitylation	K244	-0.611	-0.778	_ILFNNAVK(gl)K_
ASNS	Ubiquitylation	K245	-0.477	-0.859	_ILFNNAVKK(gl)_
ASNS	Ubiquitylation	K445		-1.075	_NGIEK(gl)HLLR_
ASNS	Ubiquitylation	K478	-0.512	-0.416	_EAFSDGITSVK(gl)NSWFK_
ASNS	Ubiquitylation	K513		-1.163	_TK(gl)EGYYYR_
ASNS	Ubiquitylation	K556	0.064		_TLTHYK(gl)SAVKA_
CCND1	Ubiquitylation	K33		-0.490	_AMLK(gl)AEETCAPSVSYFK_
CCND1	Ubiquitylation	K46	-1.016	-0.036	_AEETCAPSVSYFK(gl)CVQK_
CCND1	Ubiquitylation	K95	-0.733	-0.137	_FLSLEPVK(gl)K_
CCND1	Ubiquitylation	K96	-0.846	-0.155	_FLSLEPVKK(gl)_
CCND1	Ubiquitylation	K238		0.245	_VIK(gl)CDPDCLR_
CEBPG	Ubiquitylation	K98	-0.339		_VNQLK(gl)EENERLEAK_
CEBPG	Ubiquitylation	K113	0.032	0.273	_LLTK(gl)ELSVLK_
COBL	Phosphorylation	S962	1.121	-0.189	_LS(ph)TQDRPAAIHR_
CPS1	Phosphorylation	S1278	-0.511	-1.077	_ASRSFPFVS(ph)K_
CTNNB1	Ubiquitylation	K158		-1.265	_AIPELTK(gl)LLNDEDQVVVNK_
CTNNB1	Ubiquitylation	K180	-0.546	-0.636	_AAVM(ox)VHQLSK(gl)K_
CTNNB1	Ubiquitylation	K181	-0.717	-0.729	_AAVMVHQLSKK(gl)_
CTNNB1	Phosphorylation	S191	-0.024	0.129	_S(ph)PQMVSAIVR_
CTNNB1	Ubiquitylation	K435		-0.350	_NK(gl)MM(ox)VCQVGGIEALVR_
CTNNB1	Ubiquitylation	K496		-1.262	_LHYGLPVVVK(gl)_
CTNNB1	Phosphorylation	S552	1.233	1.224	_RTS(ph)MGGTQQQFVEGVR_
CTNNB1	Phosphorylation	T556	1.275	0.995	_RTSM(ox)GGT(ph)QQQFVEGVR_
CTNNB1	Ubiquitylation	K671	-0.941	-0.934	_MSEDKPQDYK(gl)K_
EGFR	Phosphorylation	T693	0.486	-0.139	_ELVEPLT(ph)PSGEAPNQALLR_
EGFR	Phosphorylation	S991		-0.041	_MHLPS(ph)PTDSNFYR_
EP300	Phosphorylation	S1038	-0.672	-0.349	_TEIKEEEDQPSTSATQSS(ph)PAPGQSK_
EP300	Phosphorylation	S1726	0.994	0.627	_LGLGLDDESNNQQAAATQS(ph)PGDSRR_
EP300	Phosphorylation	S2328	-1.092	0.725	_PQSQPPHSSPS(ph)PR_
HES1	Ubiquitylation	K66		0.212	_TLILDALK(gl)K_
HES1	Ubiquitylation	K67		0.212	_TLILDALK(gl)K_
HES1	Ubiquitylation	K109	-0.891		_AQMTAALSTDPSVLGK(gl)YR_
HMGCS1	Phosphorylation	S4	-1.161	-1.052	_PGS(ph)LPLNAEACWPK_
HMGCS1	Ubiquitylation	K100		-0.673	_LEVGTETIIDK(gl)SK_
HMGCS1	Ubiquitylation	K102	-1.761	-0.427	_LEVGTETIIDKSK(gl)_
HMGCS1	Ubiquitylation	K273	-0.550	-0.790	_LVQK(gl)SLAR_
HMGCS1	Ubiquitylation	K321	-0.588	-0.833	_AFMK(gl)ASSELFSQK_
HMGCS1	Ubiquitylation	K330		-0.934	_ASSELFSQK(gl)TK_
HMGCS1	Ubiquitylation	K332	-0.326		_ASSELFSQKTK(gl)_
HMGCS1	Ubiquitylation	K409		-0.898	_ITASLCDLK(gl)SR_
HMGCS1	Ubiquitylation	K428		-1.720	_TGVAPDVFAENMK(gl)LR_
HMGCS1	Phosphorylation	S495	-1.763	-1.842	_RPTPNDDTLDEGVGLVHSNIATEHIPS(ph)PAKK_
ICMT	Ubiquitylation	K278		0.187	_VPTGLPFIK(gl)GVK_
IGF2R	Ubiquitylation	K2352	-0.372	0.420	_SSNVSYK(gl)YSK_
IGF2R	Ubiquitylation	K2394	-0.020	0.221	_EGQENGHITTK(gl)SVK_
IGF2R	Phosphorylation	S2409	0.107	0.119	_ALSSLHGDDQDS(ph)EDEVLTIPEVK_
JARID2	Phosphorylation	S455	-0.219	-0.009	_LEEAHQAEKPQS(ph)PPK_
JUN	Phosphorylation	S58	-0.167	-1.247	_AKNS(ph)DLLTSPDVGLLK_
JUN	Phosphorylation	T62	2.545	1.674	_NSDLLT(ph)SPDVGLLK_
JUN	Phosphorylation	S63	2.030	1.458	_NSDLLTS(ph)PDVGLLK_
JUN	Ubiquitylation	K70	9.213		_NSDLLTSPDVGLLK(gl)_
JUN	Phosphorylation	S73	1.499	0.845	_LAS(ph)PELER_
JUN	Phosphorylation	S243	-0.642	-1.399	_LQALKEEPQTVPEMPGETPPLS(ph)PIDMESQER_
JUN	Ubiquitylation	K309	1.034	0.155	_EQVAQLK(gl)QK_
LSR	Ubiquitylation	K179	-1.147	0.703	_VVATK(gl)QGNAVTLGDYYQGR_
LSR	Phosphorylation	S321	-1.007		_AATSGVPS(ph)IYAPSTYAHLSPAK_
LSR	Phosphorylation	S332	-0.918	-0.484	_AATSGVPSIYAPSTYAHLS(ph)PAK_
LSR	Phosphorylation	S436		-0.012	_AMSEVTS(ph)LHEDDWR_
LSR	Phosphorylation	S493	0.043	0.475	_S(ph)VDALDDLT(ph)PPSTAESGSR_
LSR	Phosphorylation	T501	-0.058	1.163	_SVDALDDLT(ph)PPSTAESGSR_
LSR	Phosphorylation	S530	0.041	0.994	_S(ph)RDDLYDQDDSR_
LSR	Ubiquitylation	K637	0.966		_LK(gl)KNLALSR_
LSR	Ubiquitylation	K638	0.653	-0.615	_K(gl)NLALSR_
LSR	Phosphorylation	S643	0.927	0.905	_NLALS(ph)RESLVV_
LSR	Phosphorylation	S646		0.872	_NLALSRES(ph)LVV_
MAN2A1	Ubiquitylation	K638		-0.755	_SQDSLPQK(gl)NIIR_
MED1	Phosphorylation	S664		3.368	_DNPAQDFSTLYGSS(ph)PLER_
MED1	Phosphorylation	S771	-1.422		_LSS(ph)SDSIGPDVTDILSDIAEEASKLPSTSDDCPAIGTPLR_
MED1	Phosphorylation	T1051	-1.201	-1.247	_SQT(ph)PPGVATPPIPK_
MED1	Phosphorylation	T1057		-1.294	_SQT(ph)PPGVAT(ph)PPIPK_
MED1	Phosphorylation	S1155	0.689		_NSSQSGGKPGS(ph)SPITK_
MED1	Phosphorylation	S1156	0.829	1.055	_NSSQSGGKPGSS(ph)PITK_
MED1	Phosphorylation	S1192		-0.792	_PSSLM(ox)NPSLSKPNIS(ph)PSHSRPPGGSDK_
MED1	Phosphorylation	S1223	1.061	1.013	_AKS(ph)PISSGSGGSHM(ox)SGTSSSSGM(ox)K_
MED1	Phosphorylation	S1433	-0.191		_NYGS(ph)PLISGSTPK_
MET	Ubiquitylation	K962	0.146		_QIK(gl)DLGSELVR_
MET	Phosphorylation	S988	0.064		_S(ph)VSPTTEM(ox)VSNESVDYR_
MET	Phosphorylation	S990	0.192	-0.105	_SVS(ph)PTTEM(ox)VSNESVDYR_
MET	Phosphorylation	T992	0.501	-0.048	_SVSPT(ph)TEMVSNESVDYR_
MET	Phosphorylation	S997		0.285	_S(ph)VSPTTEMVS(ph)NESVDYR_
MKL2	Phosphorylation	S552	1.517		_M(ox)TNNEDS(ph)LSPTSSTLSNLELDAAEKDR_
MKL2	Phosphorylation	S554	1.224	1.607	_MTNNEDSLS(ph)PTSSTLSNLELDAAEKDR_
NF1	Ubiquitylation	K471		0.218	_MAPSLTFKEK(gl)_
NF1	Phosphorylation	S864		-0.458	_SNSGLATYS(ph)PPMGPVSER_
NF1	Phosphorylation	T2514		0.076	_GSEGYLAATYPTVGQT(ph)SPR_
NF1	Phosphorylation	S2515	0.071	0.316	_GSEGYLAATYPTVGQTS(ph)PR_
NF1	Phosphorylation	S2543	0.698	0.655	_S(ph)FDHLISDTK_
PHF2	Phosphorylation	S537	0.343	-0.072	_ES(ph)ASPTIPNLDLLEAHTK_
PHF2	Phosphorylation	S539	0.502	0.405	_ESAS(ph)PTIPNLDLLEAHTK_
PHF2	Phosphorylation	T541	-0.203	0.208	_SRESASPT(ph)IPNLDLLEAHTK_
PHF2	Phosphorylation	S625		0.652	_LEKS(ph)PLAGNKDNK_
PHF2	Phosphorylation	T654	0.359	-0.809	_ALRPPT(ph)SPGVFGALQNFK_
PHF2	Phosphorylation	S655	0.281	0.100	_ALRPPTS(ph)PGVFGALQNFK_
PHF2	Phosphorylation	S705		0.456	_RDLS(ph)FLLDK_
PHF2	Phosphorylation	S882	-0.109	0.152	_DSDYVYPSLES(ph)DEDNPIFK_
PHF2	Phosphorylation	S905	-0.242		_GSDDAPYS(ph)PTAR_
PKD1	Phosphorylation	T867		0.841	_GT(ph)YHVRLEVNNTVSGAAAQADVR_
PRKCSH	Ubiquitylation	K383	1.564	0.883	_NK(gl)FEEAER_
PROX1	Phosphorylation	S511	0.460	0.502	_DRAS(ph)PESLDLTR_
RB1CC1	Phosphorylation	S222	0.084	0.562	_LDS(ph)LPEHEDSEK_
RB1CC1	Phosphorylation	S237	-0.464	-0.874	_S(ph)TELVLSPDM(ox)PR_
RB1CC1	Phosphorylation	T238	-0.376	-0.874	_S(ph)TELVLSPDM(ox)PR_
RB1CC1	Phosphorylation	S257	-0.819		_TTNESLLTS(ph)FPK_
RB1CC1	Phosphorylation	S266		0.766	_SVEHVS(ph)PDTADAESGK_
RB1CC1	Phosphorylation	S624	-0.685	-0.445	_AAQS(ph)LDEM(ox)SQTITDLLSEQK_
SEC63	Ubiquitylation	K147	-0.616	0.359	_IAK(gl)AYAALTDEESR_
SEC63	Ubiquitylation	K287	-1.088	-0.189	_EIGSINLK(gl)K_
SEC63	Ubiquitylation	K300		-1.540	_NEPPLTCPYSLK(gl)AR_
SEC63	Ubiquitylation	K416		-0.090	_TIQDLVSLK(gl)ESDR_
SEC63	Phosphorylation	T537		0.944	_KKPT(ph)PVLLPQSK_
SEC63	Ubiquitylation	K631	-1.520		_ALLETK(gl)SK_
SEC63	Ubiquitylation	K633		-0.387	_ALLETKSK(gl)_
SMAD3	Ubiquitylation	K13	-0.704		_(ac)SSILPFTPPIVK(gl)R_
SMARCA4	Ubiquitylation	K357	-0.934		_ITPIQK(gl)PR_
SMARCA4	Ubiquitylation	K405	0.109	1.148	_ATIELK(gl)ALR_
SMARCA4	Ubiquitylation	K437	-0.317		_DTALETALNAK(gl)AYKR_
SMARCA4	Ubiquitylation	K455	0.225		_ITEK(gl)LEK_
SMARCA4	Ubiquitylation	K496		0.923	_SVTGK(gl)IQK_
SMARCA4	Phosphorylation	S677	-0.880	-0.324	_KAENAEGQTPAIGPDGEPLDETSQMS(ph)DLPVK_
SMARCA4	Ubiquitylation	K1283	0.125		_ILAAAK(gl)YK_
SMARCA4	Phosphorylation	S1413	-0.265	0.515	_EVDYSDS(ph)LTEK_
SMARCA4	Phosphorylation	S1486	-0.713	-0.935	_LS(ph)PNPPNLTK_
SP1	Phosphorylation	S2	0.834	1.114	_(ac)S(ph)DQDHSMDEMTAVVK_
SP1	Phosphorylation	S7	0.586	0.217	_(ac)SDQDHS(ph)MDEMTAVVK_
SP1	Phosphorylation	S56	-0.154		_SSSTGSSSSTGGGGQES(ph)QPSPLALLAATCSR_
SP1	Phosphorylation	S59	-0.217	-0.135	_SSSTGSSSSTGGGGQESQPS(ph)PLALLAATCSR_
STAT5B	Phosphorylation	S194		0.270	_IQAQFGPLAQLS(ph)PQER_
TK1	Phosphorylation	S13	-1.350	-1.354	_(ac)SCINLPTVLPGS(ph)PSK_
TK1	Phosphorylation	S15	-1.567	-1.084	_SCINLPTVLPGSPS(ph)K_
TK1	Ubiquitylation	K16	-1.664		_(ac)SCINLPTVLPGSPSK(gl)TR_