RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
SETD2	3	-1.690	2.960	1.619		1.725	-0.978	0.379
ATRX	2	0.050	0.010				0.582	0.629
FYN	1	1.080	-1.100
FYN	1	1.080	-1.100
NDE1	1
TOP2B	1	0.830	-0.650	-1.137			0.859	0.666
GNAO1	1	1.200	-1.320	0.217			-0.334	-0.374
KDM2B	1	-0.080	-0.260
KDM2B	1	-0.080	-0.260				0.216	0.247
ARID1A	1	0.360	-0.350	0.683	0.272	0.870	-0.131	0.043
PSEN2	1	-1.820	3.280
POU3F1	1	-1.360	2.530
NCOR2	1	1.850	-1.050
NCOR2	1	1.850	-1.050				0.037	-1.127
FGFR3	0	-1.120	1.390
LRP6	0	0.210	0.050
PSEN1	0	0.930	-1.110
APLP2	0	-0.080	0.400
MECOM	0	0.130	-0.120		-0.189	0.565		-1.171
MECOM	0	0.740	-0.750		-0.189	0.565		-1.171
GLI3	0	-0.980	1.650
HTRA2	0	1.220	-0.530		0.602		-0.023	1.287
SMARCA4	0	-0.810	1.520	0.629	-0.158	0.141	0.337	0.333
TWSG1	0	0.420	-0.740
ALDH1A2	0	-1.010	0.740
DCLK1	0	-1.340	1.710
DCLK1	0	-1.340	1.710
NUMB	0	0.310	0.050
NKX2-1	0	-0.730	0.480		0.174	0.236
NKX2-1	0	-0.730	0.480				-0.123
APP	0	0.100	-0.260					0.285
NFIB	0	-1.030	1.080	-0.711	0.025	0.306		1.031
ZEB1	0	0.640	-0.450
ZEB1	0	0.640	-0.450
ARHGAP35	0	1.030	-0.620	-0.833			0.397	0.020
MSX1	0	0.420	-0.450
DLC1	0	-0.650	0.390
CDK5	0	-1.100	1.740	-0.236			1.063	0.312
CTNNB1	0	0.490	-0.230
CTNNB1	0	0.490	-0.230	-0.415			0.628	0.215
NR2F1	0	-0.300	-0.080		0.225	0.992	0.424	0.474
FOXL1	0	0.560	-0.350	-1.217	-0.424	0.659
SOX2	0	-0.250	0.870
NR2F2	0	-1.120	1.260	-1.119	0.136	0.670
NR2F2	0	-1.120	1.260		0.225	0.992	0.424	0.474
DYNC2H1	0	-1.530	1.820				-0.319	0.050
DYNC2H1	0	-1.530	1.820	0.313
SRC	0	0.050	0.470	-0.031

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ALDH1A2	Ubiquitylation	K365		-1.744	_VVGSPFDPTTEQGPQIDK(gl)K_
ALDH1A2	Ubiquitylation	K366		-1.744	_VVGSPFDPTTEQGPQIDK(gl)K_
ALDH1A2	Ubiquitylation	K507		0.123	_EYSEVK(gl)TVTVK_
APLP2	Ubiquitylation	K744	-1.204		_HLNK(gl)M(ox)QNHGYENPTYK_
APP	Ubiquitylation	K751	-1.778	-1.280	_HLSK(gl)M(ox)QQNGYENPTYK_
ARHGAP35	Phosphorylation	S975	-0.388	-0.423	_AGS(ph)PLCNSNLQDSEEDIEPSYSLFR_
ARHGAP35	Phosphorylation	S1072		-0.719	_SVS(ph)SSPWLPQDGFDPSDYAEPMDAVVKPR_
ARHGAP35	Phosphorylation	S1150	1.218	0.094	_KVS(ph)IVSKPVLYR_
ARHGAP35	Phosphorylation	S1179	0.400	0.591	_TSFSVGS(ph)DDELGPIR_
ARID1A	Phosphorylation	S363	0.211	0.022	_SHHAPM(ox)S(ph)PGSSGGGGQPLAR_
ARID1A	Phosphorylation	S367	-0.142		_SHHAPMSPGSS(ph)GGGGQPLAR_
ARID1A	Phosphorylation	S381		0.335	_TPQPS(ph)SPMDQMGK_
ARID1A	Phosphorylation	S382	1.506	0.780	_TPQPSS(ph)PMDQMGK_
ARID1A	Phosphorylation	S696	-0.934	-0.737	_GPS(ph)PSPVGSPASVAQSR_
ARID1A	Phosphorylation	S702	0.267	-0.175	_GPS(ph)PSPVGS(ph)PASVAQSR_
ARID1A	Phosphorylation	S705	0.157		_GPS(ph)PSPVGSPAS(ph)VAQSR_
ARID1A	Phosphorylation	S772	-0.112	-0.485	_NPQMPQYSSPQPGSALS(ph)PR_
ARID1A	Phosphorylation	S1182	1.584	1.063	_S(ph)NSVGIQDAFNDGSDSTFQK_
ARID1A	Phosphorylation	S1184	1.732	1.114	_SNS(ph)VGIQDAFNDGSDSTFQK_
ARID1A	Phosphorylation	S1754	0.131	-0.654	_VS(ph)SPAPM(ox)EGGEEEEELLGPK_
ARID1A	Phosphorylation	S1755	-0.409	-0.587	_VSS(ph)PAPMEGGEEEEELLGPK_
ARID1A	Phosphorylation	S1944		-0.489	_FPFGIS(ph)PAQSHR_
ATRX	Phosphorylation	S34	-0.115	-0.055	_LHDFLAHSSEESEETSS(ph)PPR_
ATRX	Phosphorylation	S92	-0.219	-0.386	_YVES(ph)DDEKPLDDETVNEDASNENSENDITMQSLPK_
ATRX	Phosphorylation	S313	0.766	0.451	_VYEHTS(ph)RFSPK_
ATRX	Phosphorylation	S316		0.668	_VYEHTSRFS(ph)PK_
ATRX	Ubiquitylation	K403	0.759		_SVLADIK(gl)K_
ATRX	Ubiquitylation	K404	0.759		_SVLADIK(gl)K_
ATRX	Phosphorylation	S596		0.021	_LTPVSLS(ph)NSPIKGADCQEVPQDKDGYK_
ATRX	Phosphorylation	S598	-0.157	-0.195	_LTPVSLSNS(ph)PIK_
ATRX	Phosphorylation	S677	0.048	0.009	_RPTETNPVTSNS(ph)DEECNETVKEK_
ATRX	Phosphorylation	S819	0.797	0.578	_RQTQSESSNYDS(ph)ELEKEIK_
ATRX	Phosphorylation	S871	3.829	4.009	_NLKTS(ph)QEGSSDDAER_
ATRX	Phosphorylation	T887	1.203	1.421	_ET(ph)FSSAEGTVDKDTTIMELR_
ATRX	Phosphorylation	S889	0.942		_ETFS(ph)SAEGTVDKDTTIMELR_
ATRX	Phosphorylation	S1061	1.043	0.887	_KDELS(ph)DYAEK_
ATRX	Phosphorylation	S1527	-0.080	0.235	_EVIEIEDAS(ph)PTKCPITTK_
ATRX	Ubiquitylation	K2182		-0.315	_QVTK(gl)QSLSFR_
CDK5	Ubiquitylation	K56	0.606	0.237	_EICLLK(gl)ELK_
CTNNB1	Ubiquitylation	K158		-1.265	_AIPELTK(gl)LLNDEDQVVVNK_
CTNNB1	Ubiquitylation	K180	-0.546	-0.636	_AAVM(ox)VHQLSK(gl)K_
CTNNB1	Ubiquitylation	K181	-0.717	-0.729	_AAVMVHQLSKK(gl)_
CTNNB1	Phosphorylation	S191	-0.024	0.129	_S(ph)PQMVSAIVR_
CTNNB1	Ubiquitylation	K435		-0.350	_NK(gl)MM(ox)VCQVGGIEALVR_
CTNNB1	Ubiquitylation	K496		-1.262	_LHYGLPVVVK(gl)_
CTNNB1	Phosphorylation	S552	1.233	1.224	_RTS(ph)MGGTQQQFVEGVR_
CTNNB1	Phosphorylation	T556	1.275	0.995	_RTSM(ox)GGT(ph)QQQFVEGVR_
CTNNB1	Ubiquitylation	K671	-0.941	-0.934	_MSEDKPQDYK(gl)K_
DCLK1	Phosphorylation	S32	0.456	0.202	_VNGLPS(ph)PTHSAHCSFYR_
DCLK1	Phosphorylation	T336	-1.793		_SPSPSPT(ph)SPGSLR_
DCLK1	Phosphorylation	S337	-0.893	-0.694	_SPSPSPTS(ph)PGSLR_
DCLK1	Phosphorylation	S352	0.641	0.487	_SSQHGGS(ph)STSLASTK_
DCLK1	Phosphorylation	S352	0.103	0.523	_DLYRPLS(ph)SDDLDSVGDSV_
DCLK1	Phosphorylation	S353		0.566	_DLYRPLSS(ph)DDLDSVGDSV_
DLC1	Phosphorylation	S842		-0.139	_TGS(ph)FHGPGHISLR_
DLC1	Phosphorylation	S946		-0.497	_FSDEGDSDSALDSVSPCPSS(ph)PK_
DYNC2H1	Ubiquitylation	K158		0.457	_SDTNLTK(gl)LK_
DYNC2H1	Ubiquitylation	K398		-0.876	_IIAPAEQK(gl)IAGK_
DYNC2H1	Ubiquitylation	K1248		-0.579	_AADLK(gl)DLNSR_
DYNC2H1	Ubiquitylation	K2608		-1.364	_LNSTDLK(gl)DVIKK_
DYNC2H1	Ubiquitylation	K2613		-1.117	_LNSTDLKDVIKK(gl)_
FGFR3	Ubiquitylation	K205		-0.115	_IGGIK(gl)LR_
FOXL1	Phosphorylation	S6	0.325	0.055	_YS(ph)VSSPNSLGVVPYLGGEQSYYR_
FOXL1	Phosphorylation	S235		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXL1	Phosphorylation	S241		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXL1	Phosphorylation	S259	-0.376	-0.198	_IES(ph)PDSSSSSLSSGSSPPGSLPSAR_
FOXL1	Phosphorylation	S320	0.313	0.178	_GS(ph)PQSAAAELSSGLLASAAASSR_
FOXL1	Phosphorylation	S323		0.347	_GSPQS(ph)AAAELSSGLLASAAASSR_
FOXL1	Ubiquitylation	K554	-0.030	0.013	_TSGAFVYDCSK(gl)F_
FYN	Ubiquitylation	K13	0.286		_DKEATK(gl)LTEER_
FYN	Phosphorylation	S21	0.373	0.731	_DGS(ph)LNQSSGYR_
FYN	Ubiquitylation	K259		0.921	_LTDLSVK(gl)TK_
FYN	Ubiquitylation	K261	0.099		_LTDLSVKTK(gl)_
FYN	Ubiquitylation	K273	6.025		_SLCLEKK(gl)_
FYN	Ubiquitylation	K275	-0.521		_ESLQLIK(gl)R_
GLI3	Phosphorylation	S664	-0.582	-0.252	_S(ph)PGRPTQGALGEQQDLSNTTSK_
GNAO1	Ubiquitylation	K29	0.529	-0.094	_NLREDGEK(gl)AAK_
GNAO1	Ubiquitylation	K92	1.569		_LK(gl)IDFGEAAR_
GNAO1	Ubiquitylation	K349	-0.221	-0.339	_NNLK(gl)ECGLY_
HTRA2	Ubiquitylation	K237	-1.868	-0.270	_IQTK(gl)EPLPTLPLGR_
KDM2B	Ubiquitylation	K129		-0.632	_DVK(gl)LLVGSR_
KDM2B	Phosphorylation	S357	-0.521	-0.434	_SSS(ph)PTAGPSTEGAEGPEEK_
KDM2B	Phosphorylation	S394	1.119	1.347	_ELS(ph)KELNHEIQR_
KDM2B	Phosphorylation	S443	2.646		_APKPPTDGS(ph)TSPTSTPSEDQEALGK_
KDM2B	Phosphorylation	S458		1.030	_HQLGPS(ph)LRSPPR_
KDM2B	Phosphorylation	S461		0.284	_HQLGPSLRS(ph)PPR_
KDM2B	Phosphorylation	S472	-0.918	-1.112	_VISRPPPS(ph)VSPPK_
KDM2B	Phosphorylation	S474	-0.740	-1.153	_VISRPPPSVS(ph)PPK_
LRP6	Ubiquitylation	K1443		-0.221	_GK(gl)SMISSLSIMGGSSGPPYDR_
MECOM	Phosphorylation	S62	-1.041	-0.744	_EGS(ph)PYKAPIYIPDDIPIPAEFELR_
MECOM	Phosphorylation	S1039	-0.074	0.136	_NFIGNSNHGSQS(ph)PR_
MSX1	Phosphorylation	S154		0.148	_RLS(ph)PPACTLR_
NCOR2	Phosphorylation	S939	-0.637		_LLS(ph)PRPSLLTPTGDPR_
NCOR2	Phosphorylation	S943		-0.740	_LLSPRPS(ph)LLTPTGDPR_
NCOR2	Phosphorylation	S956	-0.223	-0.308	_ANAS(ph)PQKPLDLK_
NCOR2	Phosphorylation	S1023		-0.334	_S(ph)RSPAPPADKEAFAAEAQK_
NCOR2	Phosphorylation	S1025		1.950	_SRS(ph)PAPPADKEAFAAEAQK_
NCOR2	Phosphorylation	T1383	-1.746	-2.157	_EGT(ph)PPPPPPSR_
NCOR2	Phosphorylation	S1479	0.325	-0.132	_SLIGS(ph)PGR_
NCOR2	Phosphorylation	S1778		-0.687	_HSSSPLS(ph)PGGPTHLTKPTTTSSSER_
NCOR2	Phosphorylation	S1970	-0.321		_SGLEPAS(ph)SPSK_
NCOR2	Phosphorylation	S1971	-0.480		_SGLEPASS(ph)PSK_
NCOR2	Phosphorylation	S2223	-0.074	-1.140	_TSVLGGGEDGIEPVS(ph)PPEGMTEPGHSR_
NCOR2	Phosphorylation	S2258	-0.573	-0.210	_S(ph)PGNTSQPPAFFSK_
NCOR2	Phosphorylation	S2413		0.973	_AKS(ph)PAPGLASGDRPPSVSSVHSEGDCNR_
NDE1	Ubiquitylation	K270	2.830		_VGALESK(gl)LASCR_
NDE1	Phosphorylation	S282	-0.767	-0.382	_NLVYDQS(ph)PNR_
NDE1	Phosphorylation	S306		-2.156	_RPS(ph)STSVPLGDK_
NFIB	Phosphorylation	S294		-1.873	_TISIDENM(ox)EPSPTGDFYPSPS(ph)SPAAGSR_
NFIB	Phosphorylation	S295	-1.280		_TISIDENMEPSPTGDFYPSPSS(ph)PAAGSR_
NFIB	Phosphorylation	S300	-1.728		_TISIDENM(ox)EPSPTGDFYPSPSSPAAGS(ph)R_
NFIB	Phosphorylation	S311	1.021	0.671	_DQDMS(ph)SPTTM(ox)K_
NFIB	Phosphorylation	S312	0.764	0.746	_DQDMSS(ph)PTTMK_
NFIB	Phosphorylation	T314		0.827	_DQDMSSPT(ph)TMK_
NFIB	Phosphorylation	S325		0.852	_KPEKPLFS(ph)SASPQDSSPR_
NFIB	Phosphorylation	S328	1.295	0.637	_KPEKPLFSSAS(ph)PQDSSPR_
NFIB	Phosphorylation	S332	-0.428	-1.102	_KPEKPLFSSASPQDS(ph)SPR_
NFIB	Phosphorylation	S333	-0.428		_KPEKPLFSSASPQDS(ph)SPR_
NR2F2	Ubiquitylation	K362		0.144	_FGK(gl)LLLR_
NR2F2	Ubiquitylation	K389	-0.473	-0.156	_LVGK(gl)TPIETLIR_
NUMB	Ubiquitylation	K63	0.281		_GMHICEDAVK(gl)R_
NUMB	Phosphorylation	T436		0.878	_RT(ph)PSEADRWLEEVSK_
POU3F1	Ubiquitylation	K377	0.051	-0.035	_LK(gl)PLLNK_
PSEN1	Phosphorylation	S313		0.844	_VSKNS(ph)KYNAESTER_
PSEN1	Ubiquitylation	K314	0.016	0.414	_NSK(gl)YNAESTER_
PSEN1	Phosphorylation	S366	-0.340	0.055	_AAVQELSS(ph)SILAGEDPEER_
PSEN1	Phosphorylation	S367	0.005	0.066	_AAVQELSSS(ph)ILAGEDPEER_
PSEN2	Phosphorylation	S58	-0.112	-0.130	_TSLM(ox)SAES(ph)PTPR_
SETD2	Phosphorylation	S130	-0.443		_M(ox)EIGDTLSTAEES(ph)SPPK_
SETD2	Phosphorylation	S131	-0.001	-0.163	_M(ox)EIGDTLSTAEESS(ph)PPK_
SETD2	Phosphorylation	S624	0.374	0.432	_LNDS(ph)PTLKK_
SETD2	Phosphorylation	S708	0.398		_TDAVLM(ox)TSDDSVTGSELS(ph)PLVK_
SETD2	Phosphorylation	S742	-1.167	-1.779	_S(ph)ESPFRETEPLVSPHQDK_
SETD2	Phosphorylation	S744	-0.557		_SES(ph)PFRETEPLVSPHQDK_
SETD2	Phosphorylation	T1083		0.552	_NSTLPMEET(ph)SPCSSR_
SETD2	Phosphorylation	S1084		-0.102	_NSTLPMEETS(ph)PCSSR_
SETD2	Phosphorylation	T1872	-0.148	-1.034	_LSTEADTDT(ph)PKK_
SETD2	Phosphorylation	S1885		0.110	_IIS(ph)ENSMDSAISDATSELEGK_
SETD2	Phosphorylation	S1888	1.247	0.067	_IISENS(ph)M(ox)DSAISDATSELEGK_
SMARCA4	Ubiquitylation	K357	-0.934		_ITPIQK(gl)PR_
SMARCA4	Ubiquitylation	K405	0.109	1.148	_ATIELK(gl)ALR_
SMARCA4	Ubiquitylation	K437	-0.317		_DTALETALNAK(gl)AYKR_
SMARCA4	Ubiquitylation	K455	0.225		_ITEK(gl)LEK_
SMARCA4	Ubiquitylation	K496		0.923	_SVTGK(gl)IQK_
SMARCA4	Phosphorylation	S677	-0.880	-0.324	_KAENAEGQTPAIGPDGEPLDETSQMS(ph)DLPVK_
SMARCA4	Ubiquitylation	K1283	0.125		_ILAAAK(gl)YK_
SMARCA4	Phosphorylation	S1413	-0.265	0.515	_EVDYSDS(ph)LTEK_
SMARCA4	Phosphorylation	S1486	-0.713	-0.935	_LS(ph)PNPPNLTK_
SOX2	Phosphorylation	S251	0.157	-0.109	_SEASSS(ph)PPVVTSSSHSR_
SRC	Phosphorylation	S17	-0.604	-0.689	_S(ph)LEPAENVHGAGGGAFPASQTPSKPASADGHR_
SRC	Phosphorylation	S75	0.060	0.331	_LFGGFNSSDTVTS(ph)PQR_
TOP2B	Ubiquitylation	K205		0.226	_FTVETACK(gl)EYK_
TOP2B	Ubiquitylation	K221		-0.165	_QTWMNNMMK(gl)TSEAK_
TOP2B	Ubiquitylation	K373		-0.347	_AGVSVK(gl)PFQVK_
TOP2B	Ubiquitylation	K412		-0.274	_SFGSK(gl)CQLSEK_
TOP2B	Ubiquitylation	K550		0.643	_SYDDAESLK(gl)TLR_
TOP2B	Ubiquitylation	K643		-0.133	_GLGTSTAK(gl)EAK_
TOP2B	Ubiquitylation	K646		0.051	_EAK(gl)EYFADMER_
TOP2B	Ubiquitylation	K676		-0.188	_YAGPEDDAAITLAFSK(gl)K_
TOP2B	Ubiquitylation	K677		-0.188	_YAGPEDDAAITLAFSK(gl)K_
TOP2B	Ubiquitylation	K1079		0.700	_FILEK(gl)IQGK_
TOP2B	Ubiquitylation	K1227		-0.462	_K(gl)LQLEETMPSPYGR_
TOP2B	Ubiquitylation	K1250		-0.673	_RIIPEITAM(ox)K(gl)ADASK_
TOP2B	Phosphorylation	S1400	-0.221	-0.192	_VKAS(ph)PITNDGEDEFVPSDGLDKDEYTFSPGK_
TOP2B	Phosphorylation	T1403	-0.017	-0.156	_VKASPIT(ph)NDGEDEFVPSDGLDKDEYTFSPGK_
TOP2B	Phosphorylation	S1413	-0.430	-0.661	_ASPITNDGEDEFVPS(ph)DGLDKDEYTFSPGK_
TOP2B	Phosphorylation	T1422	-0.362		_VKAS(ph)PITNDGEDEFVPSDGLDKDEYT(ph)FSPGK_
TOP2B	Phosphorylation	S1424	-1.672	-1.441	_ASPITNDGEDEFVPSDGLDKDEYTFS(ph)PGK_
TOP2B	Phosphorylation	S1454		1.291	_KSQDFGNLFSFPSYS(ph)QK_
TOP2B	Phosphorylation	S1466	-0.324	-0.202	_FDS(ph)NEEDSASVFSPSFGLK_
TOP2B	Phosphorylation	S1552	2.808		_ASGS(ph)ENEGDYNPGRK_
TOP2B	Phosphorylation	S1581	-0.797	-1.005	_KTSFDQDS(ph)DVDIFPSDFPTEPPSLPR_
TWSG1	Ubiquitylation	K192		1.435	_ISCESMGASK(gl)YR_
ZEB1	Ubiquitylation	K77	0.237		_FTSLK(gl)EHIK_
ZEB1	Ubiquitylation	K398	-0.697	0.131	_SEK(gl)LPEDLTVK_
ZEB1	Phosphorylation	S713	-0.669	-0.753	_NNDQPQSANANEPQDSTVNLQS(ph)PLK_
ZEB1	Phosphorylation	S1025		0.260	_REAEERDS(ph)TEQEEAGPEILSNEHVGAR_
ZEB1	Phosphorylation	T1026		0.260	_REAEERDS(ph)TEQEEAGPEILSNEHVGAR_