RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
INSIG2	1	-0.190	-0.120
SKI	1	-1.870	2.800		-1.139	-0.588
DLX6	0	0.390	-0.840
DLX6	0	0.640	-0.810
DLX6	0	0.390	-0.840		-1.286	0.204
DLX6	0	0.640	-0.810		-1.286	0.204
MEF2A	0	0.820	-0.530
MEF2A	0	0.820	-0.530
LRP6	0	0.210	0.050
MEF2C	0	-0.980	1.550
MEF2C	0	-0.980	1.550
NPRL3	0	1.300	-0.580
DLX5	0	-0.590	0.650		-1.286	0.204
GLI3	0	-0.980	1.650
TGFBR1	0	-0.260	0.020
PLEKHA1	0	-0.130	0.730
PLEKHA1	0	-0.130	0.730
PLEKHA1	0	-0.130	0.730
BMPR1A	0	0.020	-0.130
WNT5A	0
SUMO1	0	0.450	0.060	-0.088	0.599	0.276	0.608	0.499
SATB2	0	0.770	-0.700	-0.631	-0.952	-0.199	0.105	0.377
TGFB3	0	0.900	-0.540
TWIST1	0	-0.640	1.150
EPHB2	0	-0.630	0.780					0.221
EPHB2	0	-0.630	0.780
MEN1	0	1.080	-1.150	0.101			0.684	-0.063
MEN1	0	1.080	-1.150			0.395
MEN1	0	1.080	-1.150
TBX3	0	-0.160	0.160
BBS7	0
LEF1	0	-0.710	0.790	-0.741
SMAD4	0	0.420	-0.390		0.020	0.556		-0.485
PRDM16	0	-1.320	2.300		-0.189	0.565		-1.171
ARID5B	0	0.580	-0.330
MSX1	0	0.420	-0.450
PYGO2	0	-0.060	-0.940
HAND2	0	0.000	0.600
SGPL1	0	0.190	0.490		-0.430		0.606	0.394
CHD7	0	0.220	-0.050	-1.168			0.026	0.297
BNC2	0	-0.250	0.560		-0.568	-0.121
SMAD2	0
ALX1	0	0.810	-0.890
EPHB3	0	0.800	-0.380					0.221
EPHB3	0	0.800	-0.380
BCOR	0	-0.620	1.340	0.006	-0.709	0.270	-1.186	-0.601
INSIG1	0	0.090	-0.390
INSIG1	0	0.090	-0.390
ASPH	0	0.610	-0.900		-0.983	-0.025	0.915	0.710

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ALX1	Phosphorylation	T68	0.678	0.289	_T(ph)SPCQDSSVNYGITK_
ALX1	Phosphorylation	S69	0.678	0.484	_T(ph)SPCQDSSVNYGITK_
ARID5B	Phosphorylation	S264	0.496	0.623	_RDS(ph)FSGVK_
BBS7	Ubiquitylation	K59		-1.507	_KGEAAAVFK(gl)TLPGPK_
BBS7	Ubiquitylation	K479		-0.952	_IQPK(gl)TCQVR_
BBS7	Ubiquitylation	K685		-0.505	_FK(gl)GTNVK_
BCOR	Ubiquitylation	K40		-0.709	_ILVNDGDASK(gl)AR_
BCOR	Phosphorylation	S422	-0.216	-0.108	_KDGS(ph)SPPLLEK_
BCOR	Phosphorylation	S423	-0.363	-0.255	_DGSS(ph)PPLLEK_
BCOR	Ubiquitylation	K530		1.176	_SMSLKNK(gl)_
BCOR	Phosphorylation	S1127		-1.150	_QPVSEPPADQVASDMPHS(ph)PTLR_
BCOR	Phosphorylation	T1129		0.299	_QPVSEPPADQVASDMPHS(ph)PTLR_
BCOR	Phosphorylation	S1139	-0.208	-0.116	_KVS(ph)GDSSHTETTAEEVPEDPLLK_
BCOR	Phosphorylation	S1142	0.092		_RKVSGDS(ph)SHTETTAEEVPEDPLLK_
BCOR	Phosphorylation	T1148	-0.101	0.000	_RKVSGDSSHTETT(ph)AEEVPEDPLLK_
BCOR	Phosphorylation	S1290		-0.318	_SWSEESLKPSDNEQGLPVFSGS(ph)PPMK_
BCOR	Phosphorylation	S1410		-0.698	_KRPEPSSDYDLS(ph)PAK_
BCOR	Ubiquitylation	K1460	0.227	0.495	_RLIVNK(gl)NAGETLLQR_
BMPR1A	Ubiquitylation	K232	-0.391	0.172	_TIAK(gl)QIQMVR_
BMPR1A	Ubiquitylation	K477	0.265	-0.134	_EVVCVK(gl)R_
BNC2	Phosphorylation	S403	-0.327	-0.372	_TEPACVS(ph)PIQNSAPVSDLTK_
CHD7	Phosphorylation	S557		-0.452	_VPVHQHS(ph)PSEPFLEKPVPDM(ox)TQVSGPNAQLVK_
CHD7	Phosphorylation	S1874	-0.088	-0.155	_TPFKDEIDEFANS(ph)PSEDKEESMEIHATGK_
CHD7	Phosphorylation	S2533		-0.792	_RTS(ph)LSAEDAEVTK_
CHD7	Phosphorylation	S2559	-0.345	-0.513	_NIPS(ph)PGQLDPDTR_
CHD7	Phosphorylation	S2956	0.383	-0.248	_DGETLEGS(ph)DAEESLDK_
DLX5	Phosphorylation	S225		-0.821	_SGEIPSEQHPGAS(ph)AS(ph)PPCASPPVSAPASWDFGVPQR_
DLX5	Phosphorylation	S227		-1.137	_SGEIPSEQHPGASAS(ph)PPCAS(ph)PPVSAPASWDFGVPQR_
DLX5	Phosphorylation	S232		-1.137	_SGEIPSEQHPGASAS(ph)PPCAS(ph)PPVSAPASWDFGVPQR_
DLX6	Phosphorylation	S130	-1.478	-1.295	_S(ph)PALPPVWDVSASAK_
DLX6	Phosphorylation	S225		-0.821	_SGEIPSEQHPGAS(ph)AS(ph)PPCASPPVSAPASWDFGVPQR_
DLX6	Phosphorylation	S227		-1.137	_SGEIPSEQHPGASAS(ph)PPCAS(ph)PPVSAPASWDFGVPQR_
DLX6	Phosphorylation	S232		-1.137	_SGEIPSEQHPGASAS(ph)PPCAS(ph)PPVSAPASWDFGVPQR_
EPHB2	Ubiquitylation	K578	-0.752	-0.618	_QSPEDVYFSK(gl)SEQLKPLK_
EPHB2	Ubiquitylation	K583	0.445	0.124	_SEQLK(gl)PLK_
EPHB2	Ubiquitylation	K617	0.339		_QK(gl)VIGAGEFGEVYK_
EPHB2	Ubiquitylation	K649	-1.219		_TLK(gl)AGYTEK_
EPHB2	Phosphorylation	S776	-0.147	-0.171	_FLEDDTS(ph)DPTYTSALGGK_
EPHB2	Phosphorylation	S897		0.000	_LPS(ph)TSGSEGVPFR_
EPHB2	Phosphorylation	T898	-0.329	0.424	_LPST(ph)SGSEGVPFR_
EPHB3	Ubiquitylation	K578	-0.752	-0.618	_QSPEDVYFSK(gl)SEQLKPLK_
EPHB3	Ubiquitylation	K583	0.445	0.124	_SEQLK(gl)PLK_
EPHB3	Ubiquitylation	K617	0.339		_QK(gl)VIGAGEFGEVYK_
EPHB3	Ubiquitylation	K649	-1.219		_TLK(gl)AGYTEK_
EPHB3	Phosphorylation	S897		0.000	_LPS(ph)TSGSEGVPFR_
EPHB3	Phosphorylation	T898	-0.329	0.424	_LPST(ph)SGSEGVPFR_
EPHB3	Ubiquitylation	K960	0.133		_IGVTLAGHQKK(gl)_
GLI3	Phosphorylation	S664	-0.582	-0.252	_S(ph)PGRPTQGALGEQQDLSNTTSK_
HAND2	Ubiquitylation	K183	0.800	1.236	_K(gl)ELNEILK_
INSIG1	Ubiquitylation	K273		-1.588	_QLAMGVPEK(gl)PHSD_
INSIG1	Ubiquitylation	K305		-2.056	_SPIVIESSK(gl)PPILR_
INSIG2	Ubiquitylation	K221		1.628	_VIAEK(gl)SHQE_
LEF1	Ubiquitylation	K88	-0.867	-0.222	_ESLEEAAK(gl)R_
LRP6	Ubiquitylation	K1443		-0.221	_GK(gl)SMISSLSIMGGSSGPPYDR_
MEF2A	Ubiquitylation	K23		-0.140	_QVTFTK(gl)R_
MEF2A	Phosphorylation	S235	0.664	-0.092	_AS(ph)PNLIGATGANSLGK_
MEF2A	Phosphorylation	T253		-1.271	_VMPT(ph)KSPPPPGGGNLGMNSR_
MEF2A	Phosphorylation	S255		-1.235	_VMPTKS(ph)PPPPGGGNLGMNSR_
MEF2A	Phosphorylation	S408	-0.173	-0.049	_SEPIS(ph)PPRDR_
MEF2A	Phosphorylation	S494	-0.858	-1.232	_GDFHSPIVLGRPPNTEDRES(ph)PSVK_
MEF2C	Ubiquitylation	K23		-0.140	_QVTFTK(gl)R_
MEF2C	Phosphorylation	S240	0.008	0.302	_NS(ph)PGLLVSPGNLNK_
MEF2C	Phosphorylation	S406	0.272	0.338	_SEPVS(ph)PPRDR_
MEN1	Ubiquitylation	K8	-1.132	0.088	_AAQK(gl)TLFPLR_
MEN1	Phosphorylation	S218		-0.820	_RES(ph)KPEEPPPPK_
MSX1	Phosphorylation	S154		0.148	_RLS(ph)PPACTLR_
NPRL3	Ubiquitylation	K83		-0.087	_SEMCGQK(gl)FELK_
NPRL3	Ubiquitylation	K287		-0.584	_VIK(gl)TTSAVK_
PLEKHA1	Ubiquitylation	K229	-0.332		_SELEK(gl)EPLR_
PLEKHA1	Phosphorylation	S308	0.664	0.154	_RLS(ph)NPCIQR_
PLEKHA1	Phosphorylation	S332	0.540		_SNS(ph)LVSTFTM(ox)EK_
PRDM16	Phosphorylation	S62	-1.041	-0.744	_EGS(ph)PYKAPIYIPDDIPIPAEFELR_
PRDM16	Phosphorylation	S1039	-0.074	0.136	_NFIGNSNHGSQS(ph)PR_
PYGO2	Phosphorylation	S40		-0.276	_AGLQM(ox)KS(ph)PEKK_
SATB2	Phosphorylation	S50	-0.357		_SGS(ph)PDVKGPPPVK_
SATB2	Phosphorylation	S623	-2.108	-2.019	_ES(ph)SPPREEAPPPPPPTEDSCAK_
SATB2	Phosphorylation	S624	-2.108	-2.019	_ES(ph)SPPREEAPPPPPPTEDSCAK_
SGPL1	Ubiquitylation	K107	-0.060		_NMSFLK(gl)VDKEYVK_
SGPL1	Ubiquitylation	K131	0.668		_LK(gl)EYSSMDAFWQEGR_
SGPL1	Ubiquitylation	K228		-0.506	_DLAFEK(gl)GIK_
SGPL1	Ubiquitylation	K231		-0.506	_DLAFEK(gl)GIK_
SKI	Ubiquitylation	K294	-0.126	-0.054	_AYILLSQDYTGK(gl)EEQAR_
SKI	Ubiquitylation	K365	-0.244	-0.390	_TLAGSSNK(gl)SLGCVHPR_
SKI	Phosphorylation	S431		-0.475	_VVS(ph)SPPCAAAVSR_
SKI	Phosphorylation	S432	-0.742	-0.438	_VVSS(ph)PPCAAAVSR_
SKI	Phosphorylation	S480	-1.160	-1.491	_LTVDTPGAPETLAPVAAPEEDKDS(ph)EAEVEVESR_
SMAD2	Phosphorylation	T8	-0.896	-0.885	_(ac)SSILPFT(ph)PPVVK_
SMAD2	Ubiquitylation	K13	-0.058		_(ac)SSILPFTPPVVK(gl)R_
SUMO1	Phosphorylation	S2	0.441	0.416	_(ac)S(ph)DQEAKPSTEDLGDKK_
SUMO1	Ubiquitylation	K7	-0.850	-1.885	_(ac)SDQEAK(gl)PSTEDLGDKK_
SUMO1	Ubiquitylation	K16	-0.686	-1.532	_(ac)SDQEAKPSTEDLGDK(gl)KEGEYIK_
SUMO1	Ubiquitylation	K17	-0.857	-1.847	_(ac)SDQEAKPSTEDLGDKK(gl)EGEYIK_
SUMO1	Ubiquitylation	K23	0.713	-0.346	_EGEYIK(gl)LK_
SUMO1	Ubiquitylation	K37	0.417		_VIGQDSSEIHFK(gl)VK_
SUMO1	Ubiquitylation	K45	0.975		_MTTHLK(gl)K_
SUMO1	Ubiquitylation	K46	0.647		_K(gl)LKESYCQR_
SUMO1	Ubiquitylation	K48	-0.241	-0.185	_LK(gl)ESYCQR_
TBX3	Ubiquitylation	K466	-2.519		_EGTAPAK(gl)VEEAR_
TGFB3	Ubiquitylation	K50		-0.557	_GQILSK(gl)LR_
TGFBR1	Ubiquitylation	K449	-0.991		_VVCEQK(gl)LRPNIPNR_
TGFBR1	Ubiquitylation	K502	0.553	0.430	_TLSQLSQQEGIK(gl)M_
TWIST1	Ubiquitylation	K150		-0.176	_IQTLK(gl)LAAR_
WNT5A	Ubiquitylation	K268		-0.304	_VGDALK(gl)EK_