RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
EI24	2	0.040	-0.170				1.100	0.629
DDX3X	2	-0.250	0.370	0.081	-0.794	-0.166	-0.062	-0.025
ST7L	1	-0.280	-0.420
FHL1	1	-0.670	-0.090	-0.060	-0.291	0.491	0.677	-0.269
ENO1	1	0.800	-0.580	-0.879	2.255	-2.013	0.739	0.221
JADE1	1	-1.690	3.120					-0.476
PPP2R1A	1	-0.260	-0.200		0.714	0.973
PPP2R1A	1	-0.260	-0.200	-0.003			-0.196	0.057
PPP2R1A	1	-0.260	-0.200		1.697	1.450	-1.553
PPP2R1B	1	1.240	-0.730		1.697	1.450	-1.553
DNAJC2	1	-1.580	2.610	-0.006			-0.151	-0.913
DNAJC2	1	-0.640	0.410	-0.006			-0.151	-0.913
PML	1	-0.420	0.350		-0.244	0.322
APBB2	1	0.800	-0.750
GNB2L1	1	1.000	-0.100		0.279	1.704
GNB2L1	1	1.000	-0.100	-0.278	-0.107	-0.424
ADIPOR2	0	0.770	-0.900
DCBLD2	0	0.690	-0.380
TRO	0	-0.560	1.140
IP6K2	0	1.470	-0.720
SMARCA2	0	-0.270	0.240	-0.431	-0.133	0.253	0.069	-0.280
SIRT1	0	0.910	-0.910
NDRG3	0	0.440	-0.490
RBBP7	0	-0.080	-0.020	0.602	0.336	0.890	0.363	0.402
RBBP7	0	-0.080	-0.020	0.397	0.000	0.776
RBBP7	0	-0.080	-0.020
TGFB1	0	-0.550	1.050
PPP2CA	0	0.160	-0.540	0.194			0.044	0.215
PPP2CA	0	0.160	-0.540		0.650	1.189
RTN4	0	0.530	-0.760		0.863		-1.844	-1.505
STK11	0
CDKN1A	0	1.080	-0.750
SMARCA4	0	-0.810	1.520	0.629	-0.158	0.141	0.337	0.333
SH3BP4	0	-0.080	0.600
PPT1	0	1.320	-0.730
BTG1	0
PSRC1	0	1.040	-1.250
ACVR1B	0	-0.720	1.030
TP53	0	-1.070	1.050	-2.808	0.076	-0.094	0.436	0.497
SMAD4	0	0.420	-0.390		0.020	0.556		-0.485
SLIT2	0	-0.940	1.740				-3.112	-1.071
CDKN2A	0	-0.080	-0.260	-0.556		-1.080	-3.270	-1.110
FLCN	0	1.070	-0.810
ADIPOR1	0	-0.720	0.740
MSX1	0	0.420	-0.450
FOXK1	0	-0.290	-0.420
FOXK1	0	-0.290	-0.420			0.639
SMAD3	0	-1.560	1.800
SMAD3	0	0.270	-0.340
PHB	0	-1.260	1.640	-0.429	0.649	-1.697
SERTAD3	0
GNG4	0	0.310	-0.680
CDKN2AIP	0	0.810	-0.640	-2.486			-0.718	0.428
BCL2	0	0.910	-0.740
NDUFA13	0	1.140	-0.760	-1.093			-0.874	-0.460
YJEFN3	0			-1.093			-0.874	-0.460
ENPP1	0	0.220	-0.270	-0.295			1.478	0.914
NDUFS3	0	0.810	-0.670	0.563	-0.004	-0.643	0.049	-0.093

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ACVR1B	Ubiquitylation	K215		0.000	_TIVLQEIIGK(gl)GR_
ADIPOR1	Ubiquitylation	K137		-0.271	_ACFK(gl)SIFR_
ADIPOR2	Ubiquitylation	K137		-0.271	_ACFK(gl)SIFR_
APBB2	Phosphorylation	S123	1.522	1.336	_NLS(ph)PTAVINITSEK_
BCL2	Ubiquitylation	K22	1.480		_YIHYK(gl)LSQR_
BTG1	Ubiquitylation	K150		0.279	_ISCK(gl)EELLLGR_
CDKN1A	Ubiquitylation	K188	-2.505	-1.077	_QTSMTDFYHSK(gl)R_
DCBLD2	Ubiquitylation	K439		-1.031	_VNPTQWQQK(gl)IAMK_
DCBLD2	Ubiquitylation	K580	-0.063		_GMK(gl)QFLPAK_
DDX3X	Ubiquitylation	K78	1.311		_DK(gl)DAYSSFGSR_
DDX3X	Ubiquitylation	K93	0.657	1.846	_GK(gl)SSFFSDR_
DDX3X	Phosphorylation	S94	0.172		_S(ph)SFFSDRGSGSR_
DDX3X	Phosphorylation	S102	0.008	0.230	_SSFFSDRGS(ph)GSR_
DDX3X	Phosphorylation	S104	-0.231	0.320	_SSFFSDRGSGS(ph)R_
DDX3X	Ubiquitylation	K130	1.572	1.502	_SGFGK(gl)FER_
DDX3X	Ubiquitylation	K347	-0.406	0.360	_GK(gl)IGLDFCK_
DDX3X	Ubiquitylation	K503	-0.796		_SGK(gl)SPILVATAVAAR_
DDX3X	Phosphorylation	S602		-0.349	_S(ph)SRFSGGFGAR_
DDX3X	Phosphorylation	S603		-0.330	_SS(ph)RFSGGFGAR_
DDX3X	Phosphorylation	S606	-0.248	-0.447	_FS(ph)GGFGAR_
DNAJC2	Phosphorylation	S47	0.625	0.452	_NAS(ph)ASFQELEDK_
EI24	Phosphorylation	S46	1.497	0.314	_RAS(ph)SVLAQR_
EI24	Phosphorylation	S330	3.730	2.164	_FPSPHPS(ph)PAK_
ENO1	Ubiquitylation	K5	0.389	0.802	_(ac)SILK(gl)IHAR_
ENO1	Ubiquitylation	K60	0.769	1.153	_YMGK(gl)GVSK_
ENO1	Ubiquitylation	K64	0.708	0.799	_GVSK(gl)AVEHINK_
ENO1	Ubiquitylation	K71	0.221	0.294	_AVEHINK(gl)TIAPALVSK_
ENO1	Ubiquitylation	K80	0.008		_TIAPALVSK(gl)K_
ENO1	Ubiquitylation	K81	0.220	0.476	_K(gl)LNVTEQEKIDK_
ENO1	Ubiquitylation	K89	1.139		_KLNVTEQEK(gl)IDK_
ENO1	Ubiquitylation	K126	-0.530	0.435	_AGAVEK(gl)GVPLYR_
ENO1	Ubiquitylation	K193		1.145	_IGAEVYHNLK(gl)NVIK_
ENO1	Ubiquitylation	K197	1.066	1.367	_IGAEVYHNLKNVIK(gl)_
ENO1	Ubiquitylation	K199	0.592	0.434	_NVIKEK(gl)YGK_
ENO1	Ubiquitylation	K202	-0.137	0.899	_YGK(gl)DATNVGDEGGFAPNILENK_
ENO1	Ubiquitylation	K233	0.597		_TAIGK(gl)AGYTDK_
ENO1	Ubiquitylation	K256	-0.004	-0.216	_SGK(gl)YDLDFKSPDDPSR_
ENO1	Ubiquitylation	K262	-1.294	-0.324	_SGKYDLDFK(gl)SPDDPSR_
ENO1	Phosphorylation	S272	0.075	0.358	_YIS(ph)PDQLADLYK_
ENO1	Ubiquitylation	K326	-0.383		_FTASAGIQVVGDDLTVTNPK(gl)R_
ENO1	Ubiquitylation	K330	1.093		_RIAK(gl)AVNEK_
ENO1	Ubiquitylation	K335	0.564	0.437	_AVNEK(gl)SCNCLLLK_
ENO1	Ubiquitylation	K406	0.892	0.279	_LAK(gl)YNQLLR_
ENO1	Phosphorylation	S419	0.673	0.511	_IEEELGS(ph)KAK_
ENO1	Ubiquitylation	K420	0.442	0.409	_IEEELGSK(gl)AK_
ENO1	Ubiquitylation	K422		0.439	_IEEELGSKAK(gl)_
ENO1	Ubiquitylation	K434		-0.324	_NFRNPLAK(gl)_
FHL1	Ubiquitylation	K131	0.708	2.028	_ILCNK(gl)CTTR_
FLCN	Phosphorylation	S62	-0.873	-0.905	_AHS(ph)PAEGASVESSSPGPK_
FOXK1	Phosphorylation	S213	-0.810	-0.624	_IQFTSLYHKEEAPAS(ph)PLRPLYPQIS(ph)PLK_
FOXK1	Phosphorylation	S223	-1.752	-1.220	_IQFTSLYHKEEAPAS(ph)PLRPLYPQIS(ph)PLK_
FOXK1	Phosphorylation	S239	-0.701		_SM(ox)VS(ph)PVPSPTGTISVPNSCPAS(ph)PR_
FOXK1	Phosphorylation	S243	-1.155	-0.657	_SM(ox)VSPVPS(ph)PTGTISVPNSCPAS(ph)PR_
FOXK1	Phosphorylation	S257	-0.928	-0.657	_SM(ox)VSPVPS(ph)PTGTISVPNSCPAS(ph)PR_
FOXK1	Ubiquitylation	K353	0.010	-1.365	_SQEEPGK(gl)GSFWR_
FOXK1	Phosphorylation	S416	0.350	-0.992	_S(ph)APAS(ph)PTHPGLMSPR_
FOXK1	Phosphorylation	S420	-0.935	-0.842	_SAPAS(ph)PTHPGLMSPR_
FOXK1	Phosphorylation	S428		0.360	_SAPAS(ph)PTHPGLMS(ph)PR_
FOXK1	Phosphorylation	T436	0.628	0.334	_SGGLQT(ph)PECLS(ph)R_
FOXK1	Phosphorylation	S441	-0.200	-0.052	_SGGLQT(ph)PECLS(ph)R_
FOXK1	Phosphorylation	S445	-0.629	-0.621	_EGS(ph)PIPHDPEFGSK_
GNB2L1	Ubiquitylation	K38	-0.238	0.350	_DK(gl)TIIMWK_
GNB2L1	Ubiquitylation	K106	-0.290		_RFVGHTK(gl)DVLSVAFSSDNR_
GNB2L1	Ubiquitylation	K130		0.632	_TIK(gl)LWNTLGVCK_
GNB2L1	Ubiquitylation	K175	-0.554	-0.015	_LVK(gl)VWNLANCK_
GNB2L1	Ubiquitylation	K183	-0.161	-0.282	_VWNLANCK(gl)_
GNB2L1	Ubiquitylation	K185	-0.061	-0.249	_VWNLANCKLK(gl)_
GNB2L1	Ubiquitylation	K257		-0.288	_YWLCAATGPSIK(gl)_
GNB2L1	Ubiquitylation	K271	0.756	-0.007	_IIVDELK(gl)QEVISTSSK_
GNG4	Ubiquitylation	K24	1.031	0.205	_KAVEQLK(gl)MEACMDR_
IP6K2	Ubiquitylation	K222		-0.746	_YEVPCVLDLK(gl)MGTR_
IP6K2	Ubiquitylation	K309		-0.145	_ELLGPVLK(gl)K_
MSX1	Phosphorylation	S154		0.148	_RLS(ph)PPACTLR_
NDRG3	Phosphorylation	S344	0.327	-0.058	_THS(ph)TSSSLGSGESPFSR_
NDRG3	Phosphorylation	S346	-0.019		_THSTS(ph)SSLGSGESPFSR_
NDRG3	Phosphorylation	S365	-0.011	0.300	_SVTSNQS(ph)DGTQESCESPDVLDR_
NDRG3	Phosphorylation	T368		1.018	_SVTSNQSDGT(ph)QESCESPDVLDR_
NDRG3	Phosphorylation	S374	0.203	0.396	_SVTSNQSDGTQESCES(ph)PDVLDR_
NDUFA13	Ubiquitylation	K22		-2.069	_VKQDMPPPGGYGPIDYK(gl)R_
NDUFA13	Ubiquitylation	K105		-1.894	_DVPDWK(gl)VGESVFHTTR_
PHB	Ubiquitylation	K83		-0.521	_NVPVITGSK(gl)DLQNVNITLR_
PHB	Ubiquitylation	K186		-0.124	_EFTEAVEAK(gl)QVAQQEAER_
PHB	Ubiquitylation	K202		0.125	_FVVEK(gl)AEQQKK_
PML	Ubiquitylation	K394	0.515	0.360	_LQDLSSCITQGK(gl)DAAVSKK_
PML	Phosphorylation	S403		3.141	_KAS(ph)PEAASTPRDPIDVDLPEEAER_
PML	Ubiquitylation	K476	-0.403	-0.735	_GPSYGEDVSNTTTAQK(gl)R_
PML	Phosphorylation	S504	-0.198	-0.109	_S(ph)SPEQPRPSTSK_
PML	Phosphorylation	S505	-0.198	-0.109	_S(ph)SPEQPRPSTSK_
PML	Phosphorylation	S518	-1.632	-1.605	_AVS(ph)PPHLDGPPS(ph)PR_
PML	Phosphorylation	S527	-1.392	-1.605	_AVS(ph)PPHLDGPPS(ph)PR_
PML	Phosphorylation	S530	0.466	0.093	_S(ph)PVIGSEVFLPNSNHVASGAGEAEER_
PML	Ubiquitylation	K623		-0.784	_IDNETQK(gl)ISQLAAVNR_
PPP2CA	Ubiquitylation	K4	-0.788	-0.378	_(ac)MDDK(gl)AFTK_
PPP2CA	Ubiquitylation	K4	-0.450	-0.016	_(ac)M(ox)DEK(gl)VFTK_
PPP2CA	Ubiquitylation	K8	-0.522		_VFTK(gl)ELDQWIEQLNECK_
PPP2CA	Ubiquitylation	K21	-1.370		_ELDQWVEQLNECK(gl)QLNENQVR_
PPP2CA	Ubiquitylation	K21	-1.106		_ELDQWIEQLNECK(gl)QLSESQVK_
PPP2CA	Ubiquitylation	K29	0.211	0.122	_QLSESQVK(gl)SLCEK_
PPP2CA	Ubiquitylation	K36	-0.455	0.187	_AK(gl)EILTK_
PPP2CA	Ubiquitylation	K36	-0.455	0.187	_AK(gl)EILTK_
PPP2CA	Ubiquitylation	K41	-0.049	0.003	_EILTK(gl)ESNVQEVR_
PPP2CA	Ubiquitylation	K74	-0.316	-0.316	_IGGK(gl)SPDTNYLFMGDYVDR_
PPP2R1A	Ubiquitylation	K34	0.304		_K(gl)LSTIALALGVER_
PPP2R1A	Ubiquitylation	K107	0.584	0.441	_DK(gl)AVESLR_
PPP2R1A	Ubiquitylation	K163	0.106	0.149	_VSSAVK(gl)AELR_
PPP2R1A	Ubiquitylation	K175		-0.351	_ASNAVK(gl)AEIR_
PPP2R1A	Ubiquitylation	K188	0.395	0.130	_AAASK(gl)LGEFAK_
PPP2R1A	Ubiquitylation	K255	0.301	0.202	_QAAEDK(gl)SWR_
PPP2R1A	Ubiquitylation	K266	0.464	0.338	_YMVADK(gl)FTELQK_
PPP2R1A	Ubiquitylation	K284		-0.575	_FSELQK(gl)AMGPK_
PPP2R1A	Ubiquitylation	K307	0.224	0.500	_VK(gl)EFCENLSADCR_
PPP2R1A	Ubiquitylation	K467		0.890	_EAATSNLK(gl)K_
PPP2R1A	Ubiquitylation	K468		0.890	_EAATSNLK(gl)K_
PPP2R1A	Ubiquitylation	K542		-0.187	_FNVAK(gl)SLQK_
PPP2R1B	Ubiquitylation	K175		-0.351	_ASNAVK(gl)AEIR_
PPP2R1B	Ubiquitylation	K284		-0.575	_FSELQK(gl)AMGPK_
PPT1	Ubiquitylation	K174		-0.445	_TLNAGAYSK(gl)VVQER_
PPT1	Ubiquitylation	K224		1.077	_NLMALKK(gl)_
PPT1	Ubiquitylation	K253		0.222	_SGQAK(gl)ETIPLQETSLYTQDR_
PSRC1	Phosphorylation	S70	-0.157	0.098	_LSLGPLS(ph)PEKLEEILDEANR_
PSRC1	Phosphorylation	S212	-1.613		_AAAS(ph)PPTPIR_
RBBP7	Phosphorylation	S3	1.036	1.447	_(ac)AS(ph)KEMFEDTVEER_
RBBP7	Ubiquitylation	K4	0.122	-0.804	_(ac)ASK(gl)EMFEDTVEER_
RBBP7	Ubiquitylation	K21	0.081	-0.004	_VINEEYK(gl)IWK_
RBBP7	Phosphorylation	S145	0.319	1.248	_TPS(ph)SDVLVFDYTK_
RBBP7	Ubiquitylation	K159	-1.249	-3.808	_HPAK(gl)PDPSGECNPDLR_
RBBP7	Ubiquitylation	K214		-0.021	_EGK(gl)IVDAK_
RBBP7	Ubiquitylation	K236		0.469	_DSSVK(gl)LYQTR_
RTN4	Phosphorylation	S7		-1.343	_(ac)MEDLDQS(ph)PLVSSSDS(ph)PPRPQPAFK_
RTN4	Phosphorylation	S11	-0.625	-0.783	_(ac)MEDLDQSPLVS(ph)SSDSPPRPQPAFK_
RTN4	Phosphorylation	S13		-0.816	_(ac)MEDLDQSPLVSSS(ph)DSPPRPQPAFK_
RTN4	Phosphorylation	S15	-0.846	-0.788	_(ac)M(ox)EDLDQS(ph)PLVSSSDS(ph)PPRPQPAFK_
RTN4	Phosphorylation	S107		-1.749	_GPLPAAPPVAPERQPS(ph)WDPSPVSSTVPAPSPLSAAAVSPSK_
RTN4	Phosphorylation	S181	-0.061	-0.102	_RRGS(ph)SGSVDETLFALPAASEPVIR_
RTN4	Phosphorylation	S184	0.143	0.327	_GSSGS(ph)VDETLFALPAASEPVIR_
RTN4	Phosphorylation	T188	0.091	0.389	_RGSSGSVDET(ph)LFALPAASEPVIR_
RTN4	Phosphorylation	T856	0.863	0.955	_ET(ph)ETFSDSSPIEIIDEFPTLISSK_
RTN4	Ubiquitylation	K1174		0.266	_NVK(gl)DAMAK_
SERTAD3	Ubiquitylation	K40	0.003		_ISLDK(gl)VQR_
SH3BP4	Phosphorylation	S131		-0.309	_NSTLSDSGMIDNLPDS(ph)PDEVAK_
SH3BP4	Phosphorylation	S246	0.304	0.661	_SYS(ph)LSELSVLQAK_
SIRT1	Phosphorylation	S14	-0.369	-0.246	_(ac)ADEAALALQPGGS(ph)PSAAGADR_
SIRT1	Phosphorylation	S16	-0.306	-1.665	_(ac)ADEAALALQPGGS(ph)PS(ph)AAGADREAASSPAGEPLR_
SIRT1	Phosphorylation	S26	-1.047	-0.245	_EAAS(ph)SPAGEPLR_
SIRT1	Phosphorylation	S27	0.351	-0.363	_EAASS(ph)PAGEPLR_
SIRT1	Phosphorylation	S47	-0.574	-0.607	_S(ph)PGEPGGAAPER_
SIRT1	Ubiquitylation	K238	-1.641		_RK(gl)DINTIEDAVK_
SIRT1	Ubiquitylation	K499	-2.138	-0.204	_LGGEYAK(gl)LCCNPVK_
SIRT1	Ubiquitylation	K578	-2.782		_GCMEEK(gl)PQEVQTSR_
SIRT1	Ubiquitylation	K601	-3.051		_NVESIAEQMENPDLK(gl)NVGSSTGEK_
SLIT2	Ubiquitylation	K72		-1.544	_ITK(gl)TDFAGLR_
SLIT2	Ubiquitylation	K103		0.625	_GAFQDLK(gl)ELER_
SLIT2	Ubiquitylation	K825		0.073	_TFDGLK(gl)SLR_
SMAD3	Ubiquitylation	K13	-0.704		_(ac)SSILPFTPPIVK(gl)R_
SMARCA2	Phosphorylation	S329	-0.314	-0.351	_IS(ph)PIQKPQGLDPVEILQER_
SMARCA2	Ubiquitylation	K333	-1.365		_ISPIQK(gl)PQGLDPVEILQER_
SMARCA2	Ubiquitylation	K381	0.558	1.360	_ATVELK(gl)ALR_
SMARCA2	Ubiquitylation	K413	-0.238		_DTTLETALNSK(gl)AYKR_
SMARCA2	Phosphorylation	S1377	-0.887	-1.142	_GRPPAEKLS(ph)PNPPK_
SMARCA4	Ubiquitylation	K357	-0.934		_ITPIQK(gl)PR_
SMARCA4	Ubiquitylation	K405	0.109	1.148	_ATIELK(gl)ALR_
SMARCA4	Ubiquitylation	K437	-0.317		_DTALETALNAK(gl)AYKR_
SMARCA4	Ubiquitylation	K455	0.225		_ITEK(gl)LEK_
SMARCA4	Ubiquitylation	K496		0.923	_SVTGK(gl)IQK_
SMARCA4	Phosphorylation	S677	-0.880	-0.324	_KAENAEGQTPAIGPDGEPLDETSQMS(ph)DLPVK_
SMARCA4	Ubiquitylation	K1283	0.125		_ILAAAK(gl)YK_
SMARCA4	Phosphorylation	S1413	-0.265	0.515	_EVDYSDS(ph)LTEK_
SMARCA4	Phosphorylation	S1486	-0.713	-0.935	_LS(ph)PNPPNLTK_
ST7L	Ubiquitylation	K153		3.825	_QNLSECK(gl)VWR_
ST7L	Ubiquitylation	K296		0.842	_DTNVLVYIK(gl)R_
ST7L	Ubiquitylation	K381	-0.609	-0.513	_TVSEK(gl)FSPETASR_
STK11	Phosphorylation	S31	0.437	0.073	_IDS(ph)TEVIYQPR_
STK11	Phosphorylation	T32	1.256	0.248	_IDS(ph)TEVIYQPR_
TGFB1	Ubiquitylation	K50		-0.557	_GQILSK(gl)LR_
TP53	Ubiquitylation	K120	-0.188		_LGFLHSGTAK(gl)SVTCTYSPALNK_
TP53	Ubiquitylation	K164	0.157	-1.260	_AMAIYK(gl)QSQHMTEVVR_
TP53	Phosphorylation	S314	-0.695	-1.000	_ALPNNTSS(ph)SPQPK_
TP53	Phosphorylation	S315	-0.762	-0.959	_RALPNNTSSS(ph)PQPK_
TP53	Ubiquitylation	K320	-0.978		_ALPNNTSSSPQPKK(gl)_
TP53	Ubiquitylation	K357	-0.231	-0.823	_ELNEALELKDAQAGK(gl)EPGGSR_
TRO	Ubiquitylation	K458		-0.396	_YLLVK(gl)DQTK_
TRO	Ubiquitylation	K619	-1.548		_SYHETSKMK(gl)_
YJEFN3	Ubiquitylation	K22		-2.069	_VKQDMPPPGGYGPIDYK(gl)R_
YJEFN3	Ubiquitylation	K105		-1.894	_DVPDWK(gl)VGESVFHTTR_