RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
RAB7A	1	1.540	-0.590	0.299	1.971	-0.775	0.288	-0.293
VPS36	1	1.310	-0.830
VPS33A	1	1.740	-0.870					0.283
MAP2K1	1	-1.590	2.780
VPS33B	1	0.750	-0.120
PIK3R4	1	1.400	-0.950	1.537			-1.555	0.077
IGF2R	1	2.250	-1.150				-0.107	0.125
HTT	1	-0.200	-0.360	0.632			0.847	0.550
ATG9A	1	-0.430	0.730					1.551
M6PR	0	-0.030	-0.320
M6PR	0	-0.030	-0.320				0.170	-0.605
LAMP2	0	-0.040	0.180				0.379	0.711
LAMP2	0	-0.040	0.180	0.164
VPS41	0	-0.880	1.290					0.189
DERL2	0	1.140	0.560
TSG101	0	0.060	-0.480
ANKRD13A	0	0.190	0.450
PIK3C3	0	-0.260	0.520
SDF4	0	-0.050	0.200
MICALL1	0	1.820	-1.320				0.010	-0.796
LGMN	0	-0.120	0.250				0.435	0.710
MAPK3	0
RAPGEF2	0	-0.860	1.560
TMEM59	0	1.350	-0.820
TMEM9	0	-0.200	0.950					-0.690
RAB14	0	0.630	-0.150				0.314	0.321
VPS4B	0	-0.670	1.580
CXCR4	0	0.640	-0.440
ATP7B	0	1.870	-1.230
RAB9A	0	1.450	-0.760				0.793	0.935
MAP2K2	0	-0.610	0.080
MAP2K2	0	-0.610	0.080
LDLR	0	0.610	-0.680					-0.328
RNF128	0	-0.740	0.330
KIDINS220	0	0.490	-0.510				0.039	0.379
CD63	0	-1.190	1.800				1.412	0.887
KIAA0368	0	0.630	-0.500	-0.703			-0.003	0.150
DERL1	0	-1.430	2.460				0.446	0.355
AP1AR	0	1.030	-1.110
OSBPL1A	0	1.370	-0.860
VIPAS39	0	-0.350	0.330
GJA1	0	-0.410	0.430
NMNAT2	0	-0.510	0.200
SQSTM1	0	-0.860	1.770	-2.165			-2.063	-1.741
SQSTM1	0	-0.440	0.530	-2.165			-2.063	-1.741
FYCO1	0	0.970	-1.080				-1.408	0.596
ATP7A	0	-0.210	0.370
TMEM192	0	-0.680	1.190
ANKRD13D	0	-1.140	1.820
LAMP1	0	-0.830	0.960				0.121	0.196
NBR1	0	0.470	-0.040	-2.408
SRC	0	0.050	0.470	-0.031
ANKRD13B	0	1.360	-0.900
VPS16	0	0.140	0.080				-0.408	-0.029
TICAM2	0						0.641	1.449

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ANKRD13A	Ubiquitylation	K27	-0.227	0.429	_QLEK(gl)ELQGQNVEAVDPR_
ANKRD13A	Ubiquitylation	K217	-0.058	0.781	_LTLDLMK(gl)PK_
ANKRD13A	Ubiquitylation	K219	-0.057	0.141	_LTLDLMKPK(gl)SR_
ANKRD13A	Ubiquitylation	K239	-0.353		_LTSPVINTSLDTK(gl)NIAFER_
ANKRD13A	Ubiquitylation	K247	0.807	0.953	_TK(gl)SGFWGWR_
ANKRD13A	Ubiquitylation	K257	0.181	0.661	_TDK(gl)AEVVNGYEAK_
ANKRD13A	Ubiquitylation	K279	0.293	0.896	_VYTVNNVNVITK(gl)IR_
ANKRD13A	Ubiquitylation	K291	-1.026		_TEHLTEEEKK(gl)R_
ANKRD13A	Ubiquitylation	K351		0.506	_DIGRPK(gl)ELTIR_
ANKRD13B	Ubiquitylation	K154		-0.082	_ICPSDTYK(gl)VWK_
ANKRD13B	Ubiquitylation	K246	-0.676	-0.339	_LTAPVVTTQLDTK(gl)NISFER_
ANKRD13B	Ubiquitylation	K254		-1.121	_NK(gl)TGILGWR_
ANKRD13B	Ubiquitylation	K364	-1.584	-0.586	_DMGRPMELTTK(gl)TQK_
ANKRD13D	Ubiquitylation	K169	-0.370	-0.566	_SEK(gl)METVSGYEAK_
AP1AR	Phosphorylation	T228	0.813	0.785	_SKT(ph)EEDILR_
ATG9A	Phosphorylation	S18	0.284	0.175	_LEASYSDS(ph)PPGEEDLLVHVAEGSK_
ATG9A	Phosphorylation	S654	-0.181		_S(ph)FSPLQPGQAPTGR_
ATG9A	Phosphorylation	S656	-0.724	-0.246	_SFS(ph)PLQPGQAPTGR_
ATG9A	Phosphorylation	S828	-0.863	-0.673	_HPEPVPEEGS(ph)EDELPPQVHKV_
ATP7A	Ubiquitylation	K333	0.029		_K(gl)AIEAVSPGLYR_
ATP7B	Ubiquitylation	K489	-0.338	-0.050	_AVAPQK(gl)CFLQIK_
ATP7B	Ubiquitylation	K1028		-0.683	_TVMFDK(gl)TGTITHGVPR_
CXCR4	Phosphorylation	S319	0.861	-0.615	_TSAQHALTS(ph)VSR_
CXCR4	Ubiquitylation	K327	0.978	0.329	_GSSLK(gl)ILSK_
DERL2	Ubiquitylation	K200		0.298	_ILK(gl)TPSILK_
FYCO1	Ubiquitylation	K416	0.606	0.803	_TK(gl)VEEVNR_
GJA1	Ubiquitylation	K109	0.099		_LNKK(gl)EEELK_
GJA1	Ubiquitylation	K128	0.209	1.057	_VAQTDGVNVDMHLK(gl)QIEIK_
GJA1	Ubiquitylation	K136	-0.888		_FK(gl)YGIEEHGK_
GJA1	Ubiquitylation	K243	0.152	0.237	_GK(gl)SDPYHATSGALSPAK_
GJA1	Ubiquitylation	K258	-0.280	0.063	_SDPYHATSGALSPAK(gl)DCGSQK_
GJA1	Ubiquitylation	K303	-0.106	0.280	_NYNK(gl)QASEQNWANYSAEQNR_
GJA1	Ubiquitylation	K345		-0.464	_MGQAGSTISNSHAQPFDFPDDNQNSK(gl)K_
GJA1	Ubiquitylation	K346	-1.004	-0.300	_MGQAGSTISNSHAQPFDFPDDNQNSKK(gl)_
GJA1	Phosphorylation	S364		-0.300	_LAAGHELQPLAIVDQRPS(ph)SR_
GJA1	Phosphorylation	S365		-0.300	_LAAGHELQPLAIVDQRPS(ph)SR_
GJA1	Phosphorylation	S372	0.940	1.430	_AS(ph)SRPRPDDLEI_
GJA1	Phosphorylation	S373	0.664	0.467	_ASS(ph)RPRPDDLEI_
HTT	Ubiquitylation	K260		-0.128	_AFIANLK(gl)_
HTT	Phosphorylation	S419	0.595	0.531	_SGS(ph)IVELIAGGGSSCS(ph)PVLSR_
HTT	Phosphorylation	S430	0.402	0.494	_SGSIVELIAGGGSS(ph)CSPVLSR_
HTT	Phosphorylation	S432	0.317	0.640	_SGSIVELIAGGGSSCS(ph)PVLSR_
HTT	Phosphorylation	S1195	-0.222	0.264	_EKEPGEQAS(ph)VPLSPK_
HTT	Phosphorylation	S1199	-0.456	-0.970	_GKEKEPGEQASVPLS(ph)PK_
HTT	Ubiquitylation	K1402	0.169	-0.538	_VSTQLK(gl)TNLTSVTK_
HTT	Phosphorylation	S1874	1.994	1.028	_LLSPQMS(ph)GEEEDSDLAAK_
IGF2R	Ubiquitylation	K2352	-0.372	0.420	_SSNVSYK(gl)YSK_
IGF2R	Ubiquitylation	K2394	-0.020	0.221	_EGQENGHITTK(gl)SVK_
IGF2R	Phosphorylation	S2409	0.107	0.119	_ALSSLHGDDQDS(ph)EDEVLTIPEVK_
KIAA0368	Ubiquitylation	K313		0.341	_VYLGDIPLK(gl)TK_
KIAA0368	Ubiquitylation	K315		-0.150	_TK(gl)EGAVLKPELK_
KIAA0368	Ubiquitylation	K321	0.004	-0.454	_EGAVLK(gl)PELK_
KIAA0368	Ubiquitylation	K1438	1.054		_DSSTEK(gl)LLQK_
KIDINS220	Ubiquitylation	K27	0.661	0.970	_ALLEK(gl)CKDVDER_
KIDINS220	Ubiquitylation	K891	1.044	0.140	_VSQNSLGEMTK(gl)LGSK_
KIDINS220	Ubiquitylation	K895	0.219	-0.692	_LGSK(gl)TALNR_
KIDINS220	Phosphorylation	S1526	-0.369	-0.457	_LPSDEDES(ph)GTEESDNTPLLK_
KIDINS220	Phosphorylation	S1555	0.253	-0.108	_VPKS(ph)PEHSAEPIR_
LAMP2	Ubiquitylation	K355	0.979		_RK(gl)SYAGYQTL_
LGMN	Ubiquitylation	K125	0.264	-0.241	_GDAEAVK(gl)GIGSGK_
LGMN	Ubiquitylation	K224	0.675	0.933	_ESSYACYYDEK(gl)R_
LGMN	Ubiquitylation	K287		1.040	_VMQFQGMK(gl)R_
M6PR	Phosphorylation	S267	-0.203	0.348	_GVGDDQLGEES(ph)EERDDHLLPM_
MAP2K1	Ubiquitylation	K192	-0.205	-0.241	_DVK(gl)PSNILVNSR_
MAP2K1	Phosphorylation	S385		0.066	_RSDAEEVDFAGWLCSTIGLNQPS(ph)TPTHAAGV_
MAP2K1	Phosphorylation	T386		0.377	_RSDAEEVDFAGWLCSTIGLNQPST(ph)PTHAAGV_
MAP2K2	Phosphorylation	S23	0.873	0.258	_RKPVLPALTINPTIAEGPS(ph)PTSEGASEANLVDLQK_
MAP2K2	Phosphorylation	T25		0.439	_RKPVLPALTINPTIAEGPSPT(ph)SEGASEANLVDLQK_
MAP2K2	Ubiquitylation	K192	-0.205	-0.241	_DVK(gl)PSNILVNSR_
MAP2K2	Phosphorylation	S293		-0.361	_ELEAIFGRPVVDGEEGEPHS(ph)ISPR_
MAP2K2	Phosphorylation	S295	-0.234	0.026	_ELEAIFGRPVVDGEEGEPHSIS(ph)PR_
MAP2K2	Phosphorylation	T394	0.570	0.158	_LNQPGT(ph)PTR_
MAPK3	Phosphorylation	Y204	-0.807	-2.487	_IADPEHDHTGFLTEY(ph)VATR_
MAPK3	Ubiquitylation	K289		-0.608	_NYLQSLPSKTK(gl)_
MICALL1	Phosphorylation	S273		-0.960	_AS(ph)PEARPQIPTKPR_
MICALL1	Phosphorylation	S295	-0.855	-0.714	_LQELAS(ph)PPAGRPTPAPR_
MICALL1	Phosphorylation	S391	-1.476	-2.088	_KKPAPLPPSSS(ph)PGPPSQDSR_
MICALL1	Phosphorylation	S486	-0.513	-0.540	_APSAS(ph)PLALHASR_
MICALL1	Phosphorylation	S578	-0.453	-0.351	_VEQM(ox)PQAS(ph)PGLAPR_
MICALL1	Phosphorylation	S619		-0.921	_SPVPSPGS(ph)SSPQLQVK_
MICALL1	Phosphorylation	S620		-0.870	_SPVPSPGSS(ph)SPQLQVK_
MICALL1	Phosphorylation	S621	-0.800	-0.798	_SPVPSPGSSS(ph)PQLQVK_
NBR1	Ubiquitylation	K464	-0.807	-2.087	_LSHK(gl)GQQFGPR_
NBR1	Ubiquitylation	K515	-0.852		_TDDLTCQQEETFLLAK(gl)EER_
NBR1	Ubiquitylation	K539	-0.515	-0.635	_QLGEVTEQTEGTAACIPQKAK(gl)_
NBR1	Ubiquitylation	K627	-0.779	-1.425	_ALPDSMVSVK(gl)R_
NBR1	Ubiquitylation	K767	-1.436		_GAEGK(gl)PGVEAGQEPAEAGER_
NMNAT2	Ubiquitylation	K155		0.782	_ILGK(gl)VGESLSR_
OSBPL1A	Phosphorylation	S499	0.594	0.704	_S(ph)FEEEGEHLGSR_
PIK3C3	Ubiquitylation	K29		0.271	_IGSLEGK(gl)R_
PIK3C3	Ubiquitylation	K158	-1.333		_VWPNVEADGSEPTK(gl)TPGR_
PIK3C3	Ubiquitylation	K209	-1.012		_EIEMINESEK(gl)R_
PIK3C3	Ubiquitylation	K287		-1.261	_SGPSDHDLK(gl)PNAATR_
RAB14	Ubiquitylation	K170	-1.161		_TGENVEDAFLEAAK(gl)K_
RAB14	Ubiquitylation	K171	-1.161	-0.915	_TGENVEDAFLEAAKK(gl)_
RAB14	Ubiquitylation	K193		-0.640	_IYQNIQDGSLDLNAAESGVQHK(gl)PSAPQGGR_
RAB7A	Ubiquitylation	K32	0.922	1.260	_K(gl)FSNQYK_
RAB7A	Ubiquitylation	K38	0.713	1.294	_FSNQYK(gl)ATIGADFLTK_
RAB7A	Ubiquitylation	K146		-0.718	_AQAWCYSK(gl)NNIPYFETSAK_
RAB9A	Ubiquitylation	K4	-0.153	-0.091	_(ac)AGK(gl)SSLFK_
RAB9A	Phosphorylation	T175		0.548	_VLAT(ph)EDRSDHLIQTDTVNLHR_
RAB9A	Phosphorylation	S179		0.548	_VLAT(ph)EDRSDHLIQTDTVNLHR_
RAPGEF2	Phosphorylation	S1022	0.043	-0.570	_SETS(ph)PVAPR_
RAPGEF2	Phosphorylation	S1080	-0.612		_DLPPFGINS(ph)PQALK_
RNF128	Ubiquitylation	K318	-0.039	0.167	_TCPMCK(gl)CDILK_
SDF4	Ubiquitylation	K165		0.147	_VK(gl)FLASK_
SQSTM1	Ubiquitylation	K13	0.150	0.302	_AYLLGK(gl)EDAAR_
SQSTM1	Phosphorylation	S28		-0.721	_RFSFCCS(ph)PEPEAEAEAAAGPGPCER_
SQSTM1	Ubiquitylation	K141	-0.915		_YK(gl)CSVCPDYDLCSVCEGK_
SQSTM1	Ubiquitylation	K157	-0.852	-0.677	_CSVCPDYDLCSVCEGK(gl)GLHR_
SQSTM1	Phosphorylation	T269	-0.681	-0.421	_LT(ph)PVS(ph)PESSSTEEK_
SQSTM1	Phosphorylation	S272	0.171	0.044	_LTPVS(ph)PESSSTEEK_
SQSTM1	Phosphorylation	S332		-0.007	_IALESEGRPEEQMESDNCS(ph)GGDDDWTHLSSK_
SQSTM1	Ubiquitylation	K420	-1.122	-0.061	_LLQTK(gl)NYDIGAALDTIQYSK_
SQSTM1	Ubiquitylation	K435	-1.352	-0.780	_NYDIGAALDTIQYSK(gl)HPPPL_
SRC	Phosphorylation	S17	-0.604	-0.689	_S(ph)LEPAENVHGAGGGAFPASQTPSKPASADGHR_
SRC	Phosphorylation	S75	0.060	0.331	_LFGGFNSSDTVTS(ph)PQR_
TMEM192	Ubiquitylation	K246	0.466	0.538	_QGDTIEYLK(gl)R_
TMEM192	Ubiquitylation	K254	1.076		_HNALLSK(gl)R_
TMEM59	Ubiquitylation	K206		-0.063	_ESSLSK(gl)MSYLQMR_
TMEM59	Ubiquitylation	K302	-2.229	-0.900	_SK(gl)TEDHEEAGPLPTK(gl)VNLAHSEI_
TMEM59	Ubiquitylation	K315	-1.591	-0.691	_TEDHEEAGPLPTK(gl)VNLAHSEI_
TMEM9	Ubiquitylation	K190	0.152	0.487	_WK(gl)LQVQEQR_
TSG101	Ubiquitylation	K237	-1.467	0.252	_ASLISAVSDK(gl)LR_
TSG101	Ubiquitylation	K257	0.192	0.329	_AQAELNALK(gl)R_
VIPAS39	Phosphorylation	S147	1.367	1.257	_TRPGS(ph)FQSLSDALSDTPAK_
VPS16	Ubiquitylation	K510	-0.970	-1.022	_AINQK(gl)LGDTPGVSYSDIAAR_
VPS33A	Ubiquitylation	K67		7.613	_MFTLK(gl)GNR_
VPS33A	Ubiquitylation	K313		-1.029	_DKNFNAVGSVLSK(gl)K_
VPS33A	Ubiquitylation	K314		-1.029	_DKNFNAVGSVLSK(gl)K_
VPS33B	Ubiquitylation	K321		1.641	_GMDIK(gl)QMK_
VPS33B	Ubiquitylation	K480	-0.791		_ITDAFSSLAK(gl)R_
VPS33B	Ubiquitylation	K504	-0.823	-0.779	_VDGEYDLK(gl)VPR_
VPS36	Ubiquitylation	K189	1.478	1.592	_AK(gl)EMVELSK_
VPS4B	Phosphorylation	S102	-0.658	-0.952	_EGQPSPADEKGNDS(ph)DGEGESDDPEK_