bioLOGIC-db

bioLOGIC Data

Query: LAMP2

[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:
Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen

Gene name	Point score	Z-score sums	RNAi high	RNAi low	RNAPII-IP (PI)	CSB-IP	CSB-IP (PI)	Chrom.	Chrom. (PI)
LAMP2	0	2.413	-0.040	0.180				0.379	0.711
LAMP2	0	2.413	-0.040	0.180	0.164

PTM Sites:
Back to Protein Results | Red/green: hit at lower/upper end of the respective screen

Gene name	PTM type	PTM site	UV	UV (PI)	Sequence
LAMP2	Ubiquitylation	K355	0.979		_RK(gl)SYAGYQTL_

ProteomicsDB-LAMP2 »

Protein-protein Interactions for LAMP2

Show screen data for	Category Name and Description	Link to cat description	Data Source
Category members	IP bait C4orf29	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait CDYL	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait DDX19B	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait DYNC2LI1	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait FAM105B	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait FAM118B	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait GTPBP8	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait LAMP2	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait RHEB	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SFXN3	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait SFXN5	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait TAZ	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015
Category members	IP bait TRUB2	Cat. description	BioPlex, Huttlin, Gygi, Cell 2015

Protein Domains in LAMP2

	Domain name	Domain Description	TC-NER relevance -log10(p-value)
Category members	Lysosome-assoc_membr_glycop	IPR002000	0

Protein complexes (CORUM database) featuring LAMP2

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)

Categories featuring LAMP2

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	GO Category	GO:0016021	integral to membrane	Database	7.67
Category members	DDR Literature	pubmedid:19647519	Paulsen et al., 2009 siRNA screen for g-H2A.x phosphorylation		3.6
Category members	GO Category	GO:0005886	plasma membrane	Database	1.21
Category members	GO Category	GO:0005765	lysosomal membrane	Database	0.82
Category members	GO Category	GO:0016020	membrane	Database	0.52
Category members	Pathway	Pathway_53	REACTOME_HEMOSTASIS	0	0.4
Category members	GO Category	GO:0007596	blood coagulation	Database	0.4
Category members	GO Category	GO:0030670	phagocytic vesicle membrane	Database	0.37
Category members	GO Category	GO:0030168	platelet activation	Database	0.13
Category members	GO Category	GO:0031088	platelet dense granule membrane	Database	0.12
Category members	Pathway	Pathway_56	REACTOME_PLATELET_ACTIVATION_SIGNALING_AND_AGGREGATION	0	0.11
Category members	GO Category	GO:0005770	late endosome	Database	0.09
Category members	Pathway	Pathway_55	REACTOME_RESPONSE_TO_ELEVATED_PLATELET_CYTOSOLIC_CA2_	0	0
Category members	Pathway	Pathway_74	KEGG_LYSOSOME	0	0
Category members	GO Category	GO:0002576	platelet degranulation	Database	0
Category members	GO Category	GO:0005764	lysosome	Database	0
Category members	GO Category	GO:0031902	late endosome membrane	Database	0