RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
RAB7A	1	1.540	-0.590	0.299	1.971	-0.775	0.288	-0.293
RAB34	1	3.070	-0.960
RAB34	1	3.070	-0.960				0.141
RAB22A	1	2.620	-1.080				0.590
RAB22A	1	2.620	-1.080	0.223
ATP6V0D1	1	-0.960	0.640
ATP6V0D1	1	-0.960	0.640	-0.252			-0.493	2.836
HLA-B	1	0.000	-0.310				-0.626
LAMP2	0	-0.040	0.180				0.379	0.711
LAMP2	0	-0.040	0.180	0.164
ATP6V0A1	0	-0.580	0.460				-0.439	0.009
RAB10	0	-0.280	-0.200	-0.051			0.529	0.549
RAB1A	0	0.980	-0.460		1.641	-1.484	0.560	0.491
CORO1A	0	0.430	0.570	-0.555			-0.197	-0.725
RAB11A	0	1.130	-0.130	0.324			0.697	0.458
RAB11A	0	1.130	-0.130
RAB23	0	1.290	-1.270				-0.106	0.952
RAB14	0	0.630	-0.150				0.314	0.321
OCRL	0	0.410	-0.320	0.052			0.039	0.310
OCRL	0	0.410	-0.320
RAB9B	0	-0.240	-0.300				0.793	0.935
RAB9A	0	1.450	-0.760				0.793	0.935
RAB38	0	-1.070	1.480				1.011	0.091
VAMP7	0	0.400	0.320				0.660	-0.175
RAB11FIP1	0	-0.560	0.660	0.252			-0.160	-0.316
RAB8B	0	-0.070	0.130	-0.051			0.529	0.549
RAB8B	0	-0.070	0.130		1.641	-1.484	0.560	0.491
RAB8B	0	-0.070	0.130				-0.216
RAB8A	0	-0.300	0.550				0.568	0.278
RAB8A	0	-0.300	0.550		1.641	-1.484	0.560	0.491
RAB31	0	-0.330	-0.520				0.590
RAB31	0	-0.330	-0.520	0.223
RAB39A	0	-0.780	0.530		1.078	-1.682
RAB11B	0	-0.130	-0.140	0.324			0.697	0.458
RAB11B	0	-0.130	-0.140
ATP6V0A2	0	1.190	-0.740				0.137	-0.457
HLA-A	0	0.790	-0.840				-0.626
HLA-C	0						-0.626
HLA-F	0	0.020	-0.190				-0.626
HLA-G	0	0.000	0.140				-0.626

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ATP6V0A1	Ubiquitylation	K119		0.578	_EINTNQEALK(gl)R_
ATP6V0A1	Ubiquitylation	K235		0.326	_K(gl)ICEGFR_
ATP6V0A1	Ubiquitylation	K255	0.143		_K(gl)EMASGVNTR_
ATP6V0A1	Ubiquitylation	K366		-0.441	_MQTNQTPPTYNK(gl)TNK_
ATP6V0A1	Ubiquitylation	K369	-1.113	-0.322	_MQTNQTPPTYNKTNK(gl)_
ATP6V0A2	Ubiquitylation	K136	0.287		_VTK(gl)TFVKR_
ATP6V0A2	Ubiquitylation	K290	0.039	-0.079	_QVLCK(gl)AAESVYSR_
ATP6V0A2	Phosphorylation	S695	0.705	0.859	_KDS(ph)EEEVSLLGSQDIEEGNHQVEDGCR_
ATP6V0D1	Ubiquitylation	K384	0.065	-0.172	_AK(gl)IDNYIPIF_
LAMP2	Ubiquitylation	K355	0.979		_RK(gl)SYAGYQTL_
OCRL	Ubiquitylation	K127		-0.129	_AQSQLLVPEQK(gl)DSSSWYQK_
OCRL	Ubiquitylation	K135	-0.111		_DSSSWYQK(gl)LDTK_
OCRL	Ubiquitylation	K391	1.116	0.789	_RNQDYK(gl)DICAR_
RAB10	Ubiquitylation	K102	-0.105		_SFENISK(gl)WLR_
RAB11A	Ubiquitylation	K69	-0.533	0.554	_VVLIGDSGVGK(gl)SNLLSR_
RAB11A	Ubiquitylation	K103	-0.360	-0.185	_SIQVDGK(gl)TIK_
RAB11A	Ubiquitylation	K106		0.335	_SIQVDGKTIK(gl)_
RAB11A	Ubiquitylation	K224	-0.187	0.901	_IVSQK(gl)QMSDRR_
RAB11B	Ubiquitylation	K69	-0.533	0.554	_VVLIGDSGVGK(gl)SNLLSR_
RAB11B	Ubiquitylation	K103	-0.360	-0.185	_SIQVDGK(gl)TIK_
RAB11B	Ubiquitylation	K106		0.335	_SIQVDGKTIK(gl)_
RAB11FIP1	Phosphorylation	S199		0.020	_DSGSDTASAIIPSTTPS(ph)VDSDDESVVKDK_
RAB11FIP1	Phosphorylation	S202	0.412	0.117	_DSGSDTASAIIPSTTPSVDS(ph)DDESVVKDK_
RAB11FIP1	Phosphorylation	S206		0.063	_DSGSDTASAIIPSTTPSVDSDDES(ph)VVK_
RAB11FIP1	Phosphorylation	S356	0.785		_HLFS(ph)STENLAAGSWKEPAEGGGLSSDR_
RAB11FIP1	Phosphorylation	S357	0.581	0.569	_HLFSS(ph)TENLAAGSWKEPAEGGGLSSDR_
RAB11FIP1	Ubiquitylation	K387	0.499		_QLSESSTK(gl)DSLK_
RAB11FIP1	Phosphorylation	S435	1.020	0.756	_RSS(ph)LLSLMTGK_
RAB11FIP1	Ubiquitylation	K448	0.061		_DVAK(gl)GSEGENPLTVPGR_
RAB11FIP1	Phosphorylation	S500		-0.343	_QGS(ph)SLNLFEDVQITEPEAEPESK_
RAB11FIP1	Phosphorylation	S501	-0.575	-0.343	_QGSS(ph)LNLFEDVQITEPEAEPESK_
RAB11FIP1	Phosphorylation	S528	-0.770	-0.601	_SEPRPPIS(ph)SPR_
RAB11FIP1	Phosphorylation	S529	-0.700	-0.667	_SEPRPPISS(ph)PR_
RAB11FIP1	Phosphorylation	S545	0.106	0.382	_LEVS(ph)PEAQPTAR_
RAB11FIP1	Phosphorylation	S967		-0.553	_SPIMADLNLSLPSIPEVAS(ph)DDERIDQVEDDGDQVEDDGETAK_
RAB11FIP1	Ubiquitylation	K1212	-1.910		_VANCSLGTATIISENLNNEVMMKK(gl)_
RAB11FIP1	Ubiquitylation	K1278	-1.376	-0.051	_IPTQVGK(gl)K_
RAB14	Ubiquitylation	K170	-1.161		_TGENVEDAFLEAAK(gl)K_
RAB14	Ubiquitylation	K171	-1.161	-0.915	_TGENVEDAFLEAAKK(gl)_
RAB14	Ubiquitylation	K193		-0.640	_IYQNIQDGSLDLNAAESGVQHK(gl)PSAPQGGR_
RAB1A	Ubiquitylation	K163		0.199	_LLLGNK(gl)CDMEAK_
RAB1A	Ubiquitylation	K174	-0.188		_VQK(gl)EQADKLAR_
RAB1A	Ubiquitylation	K213	-0.059	0.420	_DILLK(gl)SGGR_
RAB22A	Phosphorylation	S36	0.043	0.209	_FVQDHFDHNIS(ph)PTIGASFMTK_
RAB22A	Ubiquitylation	K178	-0.542		_RIPSTDANLPSGGK(gl)GFK_
RAB22A	Ubiquitylation	K181	-0.651		_RIPSTDANLPSGGK(gl)GFK_
RAB31	Phosphorylation	S36	0.043	0.209	_FVQDHFDHNIS(ph)PTIGASFMTK_
RAB31	Ubiquitylation	K178	-0.542		_RIPSTDANLPSGGK(gl)GFK_
RAB31	Ubiquitylation	K181	-0.651		_RIPSTDANLPSGGK(gl)GFK_
RAB34	Ubiquitylation	K267	0.108	-0.979	_INSDDSNLYLTASK(gl)K_
RAB34	Ubiquitylation	K268	0.108	-0.979	_INSDDSNLYLTASK(gl)K_
RAB38	Ubiquitylation	K20		-1.240	_VLVVGDAAVGK(gl)TSLVQR_
RAB39A	Ubiquitylation	K144	0.298	0.546	_EEAEK(gl)LSADCGMK_
RAB39A	Ubiquitylation	K180	-0.955		_DIYELIK(gl)K_
RAB7A	Ubiquitylation	K32	0.922	1.260	_K(gl)FSNQYK_
RAB7A	Ubiquitylation	K38	0.713	1.294	_FSNQYK(gl)ATIGADFLTK_
RAB7A	Ubiquitylation	K146		-0.718	_AQAWCYSK(gl)NNIPYFETSAK_
RAB8A	Ubiquitylation	K3	0.848		_(ac)AK(gl)TYDYLFK_
RAB8A	Ubiquitylation	K138	1.091		_ERGEK(gl)LALDYGIK_
RAB8A	Ubiquitylation	K163		0.199	_LLLGNK(gl)CDMEAK_
RAB8A	Ubiquitylation	K174	-0.188		_VQK(gl)EQADKLAR_
RAB8A	Phosphorylation	S185	0.117	0.264	_KLEGNSPQGS(ph)NQGVK_
RAB8A	Ubiquitylation	K190	-0.573		_LEGNSPQGSNQGVK(gl)ITPDQQK_
RAB8A	Ubiquitylation	K213	-0.059	0.420	_DILLK(gl)SGGR_
RAB8B	Ubiquitylation	K102	-0.105		_SFENISK(gl)WLR_
RAB8B	Ubiquitylation	K163		0.199	_LLLGNK(gl)CDMEAK_
RAB8B	Ubiquitylation	K174	-0.188		_VQK(gl)EQADKLAR_
RAB8B	Ubiquitylation	K213	-0.059	0.420	_DILLK(gl)SGGR_
RAB9A	Ubiquitylation	K4	-0.153	-0.091	_(ac)AGK(gl)SSLFK_
RAB9A	Phosphorylation	T175		0.548	_VLAT(ph)EDRSDHLIQTDTVNLHR_
RAB9A	Phosphorylation	S179		0.548	_VLAT(ph)EDRSDHLIQTDTVNLHR_
RAB9B	Ubiquitylation	K4	-0.153	-0.091	_(ac)AGK(gl)SSLFK_
RAB9B	Phosphorylation	T175		0.548	_VLAT(ph)EDRSDHLIQTDTVNLHR_
RAB9B	Phosphorylation	S179		0.548	_VLAT(ph)EDRSDHLIQTDTVNLHR_
VAMP7	Ubiquitylation	K125	0.653	1.311	_GLDK(gl)VMETQAQVDELK_
VAMP7	Ubiquitylation	K137	0.694	1.092	_VMETQAQVDELK(gl)GIMVR_
VAMP7	Ubiquitylation	K172	0.306		_TENLVDSSVTFK(gl)TTSR_