RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
HSPA8	2	-0.640	0.320	0.616	0.207	0.569	0.697	0.187
CLTA	2	-0.050	0.210
CLTA	2	-0.050	0.210		-1.163	-0.046
DNM2	1	0.440	-0.080		1.049	-1.435	1.593	1.013
DNM2	1	0.440	-0.080	0.076
CPD	1						0.231	0.449
AP3B1	1			0.283			0.568	0.447
SNAPIN	1	-2.700	4.770
FTH1	1	-0.230	0.610	2.863			0.755	1.309
FTH1	1	0.280	-0.310	2.863			0.755	1.309
IGF2R	1	2.250	-1.150				-0.107	0.125
PIK3C2A	0	0.620	-0.690				-0.145	0.459
TFRC	0	-0.840	0.870				-1.270	-0.277
TFRC	0	-0.840	0.870	0.348			-1.075	-0.602
AP1M1	0	-0.550	0.780				-0.171	-0.095
AP1M1	0	-0.550	0.780	0.192
PICALM	0	0.890	-0.980				0.221	0.666
PICALM	0	0.890	-0.980
TPD52	0	-0.530	0.450
TPD52	0	-0.530	0.450	0.917	0.236	0.484	0.821	1.162
FTL	0	1.010	-0.640				0.877	0.424
FTL	0	1.010	-0.640
AP1B1	0	-0.890	1.670
AP1B1	0	-0.890	1.670	-0.267	0.203	0.287	0.311	0.233
AP1B1	0	-0.890	1.670				-1.575	-0.671
AP1B1	0	-0.890	1.670	0.931	0.543	0.034	0.611	0.276
NAPA	0			0.479			0.251	0.740
SH3GL2	0	0.310	-0.450
RAB5A	0	-0.440	0.910	0.074	0.374	-1.305
RAB5A	0	0.080	0.240	0.074	0.374	-1.305
RAB5B	0	-0.270	0.560	0.074	0.374	-1.305
RAB5C	0	-0.660	0.470	0.074	0.374	-1.305
TPD52L1	0	-1.170	1.190
DNAJC6	0	-0.240	-0.090
VAMP8	0	0.400	-0.770
OCRL	0	0.410	-0.320	0.052			0.039	0.310
OCRL	0	0.410	-0.320
VAMP7	0	0.400	0.320				0.660	-0.175
SNX9	0			0.301	1.109	0.556	0.141	0.127
HIP1R	0	-0.280	1.350					0.541
SORT1	0
PUM1	0	-1.440	1.740	-0.867			-1.033	-0.052
ARRB1	0	0.960	-0.620
CLTC	0	0.350	-0.220	-0.538	-0.243	-0.478	0.375	0.284
ARF1	0	0.020	0.040		0.702	-1.163
TGOLN2	0	0.900	-0.640
AP1G1	0	-0.070	-0.460	-0.071			0.366	0.385
AP3S1	0	1.210	-1.210	-1.064			-0.141
GAK	0	1.140	-0.180					0.248
YIPF6	0	-0.070	0.450				0.921	1.119
AP1S2	0	1.190	-0.690	-1.049
SNX2	0	-0.850	-0.050				-0.347	0.878
VAMP2	0						0.418
VAMP2	0
TXNDC5	0	-0.390	0.840	0.683	1.407	0.087	0.669	0.412

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AP1B1	Ubiquitylation	K5	0.232	0.554	_(ac)TDSK(gl)YFTTTK_
AP1B1	Ubiquitylation	K12	0.255		_K(gl)GEIFELK_
AP1B1	Ubiquitylation	K117	-0.547		_VDK(gl)ITEYLCEPLRK_
AP1B1	Ubiquitylation	K131	0.324	-0.027	_CLK(gl)DEDPYVRK_
AP1B1	Ubiquitylation	K860		-2.206	_LQSSNIFTVAK(gl)R_
AP1B1	Ubiquitylation	K899	-0.222	-0.751	_IQPGNPSCTLSLK(gl)CR_
AP1G1	Ubiquitylation	K385	1.119	0.748	_DLDVSIK(gl)R_
AP1G1	Ubiquitylation	K595	-0.570	-0.014	_AVEYNALFKK(gl)_
AP1M1	Ubiquitylation	K43		-0.691	_(ac)SASAVYVLDLK(gl)GK_
AP1M1	Ubiquitylation	K45		-0.691	_(ac)SASAVYVLDLK(gl)GK_
AP1M1	Ubiquitylation	K272	-0.542		_SK(gl)SVELEDVK_
AP1M1	Ubiquitylation	K280		-0.292	_SVELEDVK(gl)FHQCVR_
AP1M1	Ubiquitylation	K369	0.791	0.647	_FK(gl)TTVGSVK_
AP3B1	Ubiquitylation	K74		3.486	_IVGM(ox)IAKGK(gl)_
AP3B1	Phosphorylation	S276	0.667	0.762	_NFYES(ph)DDDQKEK_
AP3S1	Ubiquitylation	K18	-0.109	0.558	_LSK(gl)FYQPYSEDTQQQIIR_
AP3S1	Ubiquitylation	K166	-0.248		_AVSAVK(gl)NMNLPEIPR_
AP3S1	Ubiquitylation	K193	-0.977		_VPNLPSFK(gl)_
ARRB1	Phosphorylation	S412	0.138	0.253	_GMKDDKEEEEDGTGS(ph)PQLNNR_
CLTA	Phosphorylation	S105	1.262	1.599	_LQS(ph)EPESIRK_
CLTA	Ubiquitylation	K223	-0.282	0.457	_LCDFNPK(gl)SSK_
CLTA	Ubiquitylation	K226	-0.199	1.848	_LCDFNPKSSK(gl)_
CLTA	Ubiquitylation	K242	0.149		_SVLISLK(gl)QAPLVH_
CLTC	Ubiquitylation	K83	0.714		_VIALK(gl)AGK_
CLTC	Ubiquitylation	K86		0.631	_VIALKAGK(gl)_
CLTC	Ubiquitylation	K389	-1.051	-0.085	_VAANAPK(gl)GILR_
CLTC	Phosphorylation	T394	-0.123	0.181	_GILRT(ph)PDTIRR_
CLTC	Ubiquitylation	K506		0.267	_IVLYAK(gl)K_
CLTC	Ubiquitylation	K507	0.050	0.267	_IVLYAKK(gl)_
CLTC	Ubiquitylation	K619	-0.177	0.475	_AHIAQLCEK(gl)AGLLQR_
CLTC	Ubiquitylation	K737	-0.435	-0.298	_YIQAACK(gl)TGQIK_
CLTC	Ubiquitylation	K742	0.005	0.082	_TGQIK(gl)EVER_
CLTC	Ubiquitylation	K851		-0.859	_GQFSTDELVAEVEK(gl)R_
CLTC	Ubiquitylation	K911	-1.282		_YCEK(gl)RDPHLACVAYER_
CLTC	Ubiquitylation	K1118	-0.674	-0.765	_AQLQK(gl)GMVK_
CLTC	Ubiquitylation	K1209		-0.791	_CYDEK(gl)MYDAAK_
CLTC	Ubiquitylation	K1443	-2.089	-0.019	_VK(gl)QLPLVKPYLR_
CLTC	Ubiquitylation	K1449		-2.307	_QLPLVK(gl)PYLR_
CLTC	Ubiquitylation	K1516		-0.990	_IAAYLFK(gl)GNNR_
CLTC	Ubiquitylation	K1609	-0.714		_EYLTK(gl)VDKLDASESLR_
CPD	Ubiquitylation	K531		2.103	_LYSLGK(gl)SVESR_
CPD	Phosphorylation	T1368		0.650	_KSLLSHEFQDET(ph)DTEEETLYSSK_
DNAJC6	Phosphorylation	S570	0.276	0.762	_RSATSTSAS(ph)PTLR_
DNM2	Ubiquitylation	K393	0.542		_EISYAIK(gl)NIHGVR_
DNM2	Phosphorylation	S764	-2.106	-1.205	_EALNIIGDISTSTVSTPVPPPVDDTWLQSASSHS(ph)PTPQR_
FTH1	Phosphorylation	S228		0.272	_MGAPESGLAEYLFDKHTLGDS(ph)DNES_
FTL	Ubiquitylation	K68		0.527	_LLK(gl)MQNQR_
HIP1R	Ubiquitylation	K5	-0.561	-0.282	_(ac)MNSIK(gl)NVPAR_
HSPA8	Ubiquitylation	K3	-0.324		_(ac)SK(gl)GPAVGIDLGTTYSCVGVFQHGK_
HSPA8	Ubiquitylation	K56	-0.260	1.224	_LIGDAAK(gl)NQVAMNPTNTVFDAK(gl)R_
HSPA8	Ubiquitylation	K71	0.041	1.713	_NQVAM(ox)NPTNTVFDAK(gl)R_
HSPA8	Ubiquitylation	K108	0.301	0.877	_VQVEYK(gl)GETK_
HSPA8	Ubiquitylation	K126	-0.071	0.472	_SFYPEEVSSMVLTK(gl)MK_
HSPA8	Ubiquitylation	K128	1.160	0.420	_MK(gl)EIAEAYLGK_
HSPA8	Ubiquitylation	K159	0.192	2.025	_QATK(gl)DAGTIAGLNVLR_
HSPA8	Ubiquitylation	K187		0.744	_IINEPTAAAIAYGLDK(gl)K_
HSPA8	Ubiquitylation	K188	-0.076	0.744	_IINEPTAAAIAYGLDKK(gl)_
HSPA8	Ubiquitylation	K319	0.026	-0.313	_GTLDPVEK(gl)ALR_
HSPA8	Ubiquitylation	K325	0.501	-0.341	_ALRDAK(gl)LDK_
HSPA8	Ubiquitylation	K328	-0.057	0.670	_LDK(gl)SQIHDIVLVGGSTR_
HSPA8	Ubiquitylation	K348	0.390	3.929	_IQK(gl)LLQDFFNGK_
HSPA8	Ubiquitylation	K357	0.339		_LLQDFFNGK(gl)ELNK_
HSPA8	Ubiquitylation	K451	0.095	0.846	_AMTK(gl)DNNLLGK_
HSPA8	Ubiquitylation	K497	0.354	0.667	_STGK(gl)ENKITITNDK_
HSPA8	Ubiquitylation	K500	0.066	1.038	_ENK(gl)ITITNDK_
HSPA8	Ubiquitylation	K507	-0.228	-0.104	_ITITNDK(gl)GR_
HSPA8	Ubiquitylation	K512	0.321	0.692	_LSK(gl)EDIER_
HSPA8	Ubiquitylation	K524	0.032	-0.180	_M(ox)VQEAEK(gl)YKAEDEKQR_
HSPA8	Ubiquitylation	K526	4.133	0.230	_MVQEAEKYK(gl)AEDEK_
HSPA8	Ubiquitylation	K531	1.093		_MVQEAEK(gl)YKAEDEK(gl)QR_
HSPA8	Ubiquitylation	K539	-0.121	0.409	_VSSK(gl)NSLESYAFNMK_
HSPA8	Ubiquitylation	K557		-0.270	_ATVEDEK(gl)LQGK_
HSPA8	Ubiquitylation	K597	0.282		_NQTAEKEEFEHQQK(gl)ELEK_
HSPA8	Ubiquitylation	K601	0.005	0.196	_ELEK(gl)VCNPIITK_
IGF2R	Ubiquitylation	K2352	-0.372	0.420	_SSNVSYK(gl)YSK_
IGF2R	Ubiquitylation	K2394	-0.020	0.221	_EGQENGHITTK(gl)SVK_
IGF2R	Phosphorylation	S2409	0.107	0.119	_ALSSLHGDDQDS(ph)EDEVLTIPEVK_
NAPA	Ubiquitylation	K153	-0.341		_AIAHYEQSADYYK(gl)GEESNSSANK_
OCRL	Ubiquitylation	K127		-0.129	_AQSQLLVPEQK(gl)DSSSWYQK_
OCRL	Ubiquitylation	K135	-0.111		_DSSSWYQK(gl)LDTK_
OCRL	Ubiquitylation	K391	1.116	0.789	_RNQDYK(gl)DICAR_
PICALM	Ubiquitylation	K210	-0.364	0.811	_YLNEK(gl)AVSYR_
PICALM	Phosphorylation	T294		-0.800	_KPHTSLT(ph)TAASPVSTSAGGIM(ox)TAPAIDIFSTPSSSNSTSK_
PIK3C2A	Ubiquitylation	K11	-1.238	-0.061	_(ac)AQISSNSGFK(gl)ECPSSHPEPTR_
PIK3C2A	Ubiquitylation	K112		-0.649	_LLLDDSFETK(gl)K_
PIK3C2A	Ubiquitylation	K113		-0.649	_LLLDDSFETK(gl)K_
PIK3C2A	Phosphorylation	S259	1.013	0.488	_VSNLQVS(ph)PK_
PIK3C2A	Phosphorylation	S338	0.437	0.685	_SQS(ph)LNIR_
PIK3C2A	Ubiquitylation	K674		-0.351	_SPTDCAQSSK(gl)SVK_
PIK3C2A	Phosphorylation	S1553	0.393	0.261	_SADAGSFS(ph)PTPGQIGGAVK_
PUM1	Ubiquitylation	K187	0.356	-0.507	_AMGEQLLPGKK(gl)_
PUM1	Phosphorylation	S745	0.731	0.490	_RDS(ph)LTGSSDLYK_
PUM1	Phosphorylation	T747	0.718		_RDSLT(ph)GSSDLYK_
PUM1	Ubiquitylation	K754	-0.441	0.520	_DSLTGSSDLYK(gl)R_
PUM1	Ubiquitylation	K830	-0.770	-0.249	_YISAAPGAEAK(gl)YR_
PUM1	Phosphorylation	S839		-0.915	_SASSASS(ph)LFSPSSTLFSSSR_
PUM1	Phosphorylation	S842	-0.409	-0.158	_SASSASSLFS(ph)PSSTLFSSSR_
PUM1	Ubiquitylation	K1001	-0.445		_ELDGHVLK(gl)CVK_
RAB5A	Ubiquitylation	K150	0.290	0.396	_NWVK(gl)ELQR_
RAB5A	Ubiquitylation	K168	-0.721	-0.117	_QASPNIVIALAGNK(gl)ADLASK_
RAB5A	Ubiquitylation	K174		0.735	_ADLASK(gl)R_
RAB5B	Ubiquitylation	K150	0.290	0.396	_NWVK(gl)ELQR_
RAB5B	Ubiquitylation	K168	-0.721	-0.117	_QASPNIVIALAGNK(gl)ADLASK_
RAB5B	Ubiquitylation	K174		0.735	_ADLASK(gl)R_
RAB5C	Ubiquitylation	K150	0.290	0.396	_NWVK(gl)ELQR_
RAB5C	Ubiquitylation	K168	-0.721	-0.117	_QASPNIVIALAGNK(gl)ADLASK_
RAB5C	Ubiquitylation	K174		0.735	_ADLASK(gl)R_
SH3GL2	Ubiquitylation	K7		-0.268	_(ac)SVAGLK(gl)K_
SH3GL2	Ubiquitylation	K8	-0.654		_(ac)SVAGLKK(gl)_
SH3GL2	Ubiquitylation	K177	-0.477	0.450	_QGK(gl)IPDEELR_
SNAPIN	Phosphorylation	T14	0.785	0.681	_(ac)AGAGSAAVSGAGT(ph)PVAGPTGR_
SNAPIN	Phosphorylation	S133	-0.868		_AM(ox)LDSGIYPPGS(ph)PGK_
SNAPIN	Ubiquitylation	K136	0.295		_AMLDSGIYPPGSPGK(gl)_
SNX2	Ubiquitylation	K116	0.089	0.156	_IESK(gl)SMSAPVIFDR_
SNX2	Phosphorylation	S119		0.336	_SMS(ph)APVIFDR_
SNX2	Ubiquitylation	K181	0.631	1.039	_SEFSVK(gl)R_
SNX2	Ubiquitylation	K218		-0.014	_SIVGMTK(gl)VK_
SNX2	Ubiquitylation	K220	-0.305		_VK(gl)VGKEDSSSTEFVEK_
SNX2	Ubiquitylation	K294	-0.176		_AADAVNK(gl)MTIK_
SNX9	Ubiquitylation	K179		0.445	_SSSYFK(gl)DSESADAGGAQR_
SNX9	Phosphorylation	S198		0.523	_ASS(ph)SSMKIPLNK_
SORT1	Ubiquitylation	K294		-0.104	_TSDLGK(gl)SFK_
SORT1	Ubiquitylation	K388	-2.073	-0.343	_GIVYSK(gl)SLDR_
TFRC	Ubiquitylation	K53	-1.280	0.042	_LAVDEEENADNNTK(gl)ANVTKPK_
TFRC	Ubiquitylation	K371		1.291	_MVTSESK(gl)NVK_
TFRC	Ubiquitylation	K374		1.291	_MVTSESK(gl)NVK_
TGOLN2	Phosphorylation	S70	-0.275	-0.051	_S(ph)SAEAQTPEDTPNK_
TGOLN2	Phosphorylation	S71	-0.489	-0.509	_DSPSKSS(ph)AEAQTPEDTPNK_
TGOLN2	Phosphorylation	T296	-0.483	-0.157	_T(ph)ESGEETDLISPPQEEVK_
TGOLN2	Phosphorylation	S298	-0.214	-0.103	_TES(ph)GEETDLISPPQEEVK_
TPD52	Ubiquitylation	K100	-0.081		_VEEEIQTLSQVLAAK(gl)EK_
TPD52	Ubiquitylation	K102	0.492		_VEEEIQTLSQVLAAKEK(gl)_
TPD52	Ubiquitylation	K169	-0.246		_KLEDVK(gl)NSPTFK_
TPD52	Phosphorylation	S171	-0.363	0.174	_KLEDVKNS(ph)PTFK_
TPD52	Phosphorylation	T173	-0.047	0.289	_KLEDVKNSPT(ph)FK_
TPD52	Phosphorylation	S176	0.349	0.394	_S(ph)FEEKVENLK_
TPD52L1	Phosphorylation	T146		0.503	_NSPT(ph)FKSFEER_
TPD52L1	Phosphorylation	S149	0.484	0.646	_NSPTFKS(ph)FEER_
VAMP2	Ubiquitylation	K54	0.408	0.792	_VNVDK(gl)VLER_
VAMP2	Phosphorylation	S58	-0.407	0.612	_ADALQAGAS(ph)QFETSAAK_
VAMP2	Ubiquitylation	K61	0.558	0.387	_VLERDQK(gl)LSELDDR_
VAMP2	Phosphorylation	S63		0.374	_ADALQAGASQFETS(ph)AAK_
VAMP7	Ubiquitylation	K125	0.653	1.311	_GLDK(gl)VMETQAQVDELK_
VAMP7	Ubiquitylation	K137	0.694	1.092	_VMETQAQVDELK(gl)GIMVR_
VAMP7	Ubiquitylation	K172	0.306		_TENLVDSSVTFK(gl)TTSR_
VAMP8	Ubiquitylation	K47	0.262	0.420	_NK(gl)TEDLEATSEHFK_
VAMP8	Phosphorylation	S55	0.753	0.547	_NKTEDLEATS(ph)EHFK_
VAMP8	Ubiquitylation	K59	-0.052		_NKTEDLEATSEHFK(gl)TTSQK_
YIPF6	Phosphorylation	S7	-0.502	-0.018	_(ac)AEAEES(ph)PGDPGTASPR_
YIPF6	Ubiquitylation	K67		0.244	_DLK(gl)AVGK_