RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
CAT	2	2.260	-1.180				1.895	-0.238
RRM2B	1	-0.160	-0.120
FOXC1	1	-2.160	3.640	-1.217	-0.424	0.659
JMJD6	1	-2.420	4.570
SLC12A1	1	0.800	-0.280				-0.386	-0.263
SLC12A1	1	0.800	-0.280
ODC1	1	-0.780	0.940
KCNJ8	1	-2.110	4.400
PKD1	0	-0.900	0.980
BAX	0	1.590	-1.170				0.811	0.359
BMP7	0
SALL1	0			-0.080	0.063	0.213	0.247	0.009
GLI3	0	-0.980	1.650
TGFBR1	0	-0.260	0.020
GATA3	0	0.000	-0.660
WFS1	0	-0.390	0.420				-0.793	-0.234
PROX1	0	0.800	-0.550
SIX1	0	1.730	-1.230		-0.334	0.495
PPAT	0	-0.100	-0.040
ALDH1A2	0	-1.010	0.740
ARL3	0	0.820	-0.590
SMAD4	0	0.420	-0.390		0.020	0.556		-0.485
ALDH9A1	0	-0.700	0.710	0.196
ARID5B	0	0.580	-0.330
BMP6	0	1.970	-0.630
ADAMTS1	0	-0.440	0.580					-0.624
PYGO2	0	-0.060	-0.940
TSC1	0	1.100	-0.150
SGPL1	0	0.190	0.490		-0.430		0.606	0.394
CTNNB1	0	0.490	-0.230
CTNNB1	0	0.490	-0.230	-0.415			0.628	0.215
TET2	0	0.550	-0.710
TET2	0	0.680	-0.450
TMED10	0	0.230	0.210
SIX2	0	1.040	-0.950		-0.334	0.495
BCL2	0	0.910	-0.740
FOXG1	0	-0.510	1.000	-1.217	-0.424	0.659
FOXG1	0	0.550	-0.250	-1.217	-0.424	0.659
AMER1	0	0.800	-0.540
FOXD2	0	-1.070	0.890
POU3F3	0	-0.340	0.810

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ALDH1A2	Ubiquitylation	K365		-1.744	_VVGSPFDPTTEQGPQIDK(gl)K_
ALDH1A2	Ubiquitylation	K366		-1.744	_VVGSPFDPTTEQGPQIDK(gl)K_
ALDH1A2	Ubiquitylation	K507		0.123	_EYSEVK(gl)TVTVK_
ALDH9A1	Ubiquitylation	K54	-1.628		_VEPADASGTEK(gl)AFEPATGR_
ALDH9A1	Ubiquitylation	K92	0.502	0.859	_IWSQK(gl)SGMER_
AMER1	Phosphorylation	T242		-1.659	_VSPT(ph)PEPS(ph)PPATEK_
AMER1	Phosphorylation	S246		-1.659	_VSPT(ph)PEPS(ph)PPATEK_
ARID5B	Phosphorylation	S264	0.496	0.623	_RDS(ph)FSGVK_
ARL3	Ubiquitylation	K9	0.216		_K(gl)LKSAPDQEVR_
ARL3	Ubiquitylation	K11	-0.579		_LK(gl)SAPDQEVR_
BAX	Ubiquitylation	K57		-1.174	_MGGEAPELALDPVPQDASTK(gl)K_
BAX	Ubiquitylation	K58	-1.718	-1.174	_MGGEAPELALDPVPQDASTKK(gl)_
BAX	Ubiquitylation	K64	0.708	1.306	_LSECLK(gl)R_
BCL2	Ubiquitylation	K22	1.480		_YIHYK(gl)LSQR_
BMP6	Ubiquitylation	K409		-1.025	_VSSASDYNSSELK(gl)TACR_
BMP7	Ubiquitylation	K178		-0.107	_IYK(gl)DYIR_
CTNNB1	Ubiquitylation	K158		-1.265	_AIPELTK(gl)LLNDEDQVVVNK_
CTNNB1	Ubiquitylation	K180	-0.546	-0.636	_AAVM(ox)VHQLSK(gl)K_
CTNNB1	Ubiquitylation	K181	-0.717	-0.729	_AAVMVHQLSKK(gl)_
CTNNB1	Phosphorylation	S191	-0.024	0.129	_S(ph)PQMVSAIVR_
CTNNB1	Ubiquitylation	K435		-0.350	_NK(gl)MM(ox)VCQVGGIEALVR_
CTNNB1	Ubiquitylation	K496		-1.262	_LHYGLPVVVK(gl)_
CTNNB1	Phosphorylation	S552	1.233	1.224	_RTS(ph)MGGTQQQFVEGVR_
CTNNB1	Phosphorylation	T556	1.275	0.995	_RTSM(ox)GGT(ph)QQQFVEGVR_
CTNNB1	Ubiquitylation	K671	-0.941	-0.934	_MSEDKPQDYK(gl)K_
FOXC1	Phosphorylation	S6	0.325	0.055	_YS(ph)VSSPNSLGVVPYLGGEQSYYR_
FOXC1	Phosphorylation	S235		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXC1	Phosphorylation	S241		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXC1	Phosphorylation	S259	-0.376	-0.198	_IES(ph)PDSSSSSLSSGSSPPGSLPSAR_
FOXC1	Phosphorylation	S320	0.313	0.178	_GS(ph)PQSAAAELSSGLLASAAASSR_
FOXC1	Phosphorylation	S323		0.347	_GSPQS(ph)AAAELSSGLLASAAASSR_
FOXC1	Ubiquitylation	K554	-0.030	0.013	_TSGAFVYDCSK(gl)F_
FOXD2	Phosphorylation	S96		1.395	_GAAAAAGS(ph)PGPGAAAAR_
FOXG1	Phosphorylation	S6	0.325	0.055	_YS(ph)VSSPNSLGVVPYLGGEQSYYR_
FOXG1	Phosphorylation	S235		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXG1	Phosphorylation	S241		-1.239	_TENGTCPS(ph)PPQPLS(ph)PAAALGSGSAAAVPK_
FOXG1	Phosphorylation	S259	-0.376	-0.198	_IES(ph)PDSSSSSLSSGSSPPGSLPSAR_
FOXG1	Phosphorylation	S320	0.313	0.178	_GS(ph)PQSAAAELSSGLLASAAASSR_
FOXG1	Phosphorylation	S323		0.347	_GSPQS(ph)AAAELSSGLLASAAASSR_
FOXG1	Ubiquitylation	K554	-0.030	0.013	_TSGAFVYDCSK(gl)F_
GATA3	Phosphorylation	S162	-1.195	-0.563	_DVS(ph)PDPSLSTPGSAGSAR_
GLI3	Phosphorylation	S664	-0.582	-0.252	_S(ph)PGRPTQGALGEQQDLSNTTSK_
JMJD6	Ubiquitylation	K167	-0.059	-0.130	_FFTDDLFQYAGEK(gl)R_
JMJD6	Ubiquitylation	K219		-0.251	_ELIK(gl)VTR_
KCNJ8	Ubiquitylation	K48		0.355	_SGACNLAHK(gl)NIR_
KCNJ8	Ubiquitylation	K347		-0.233	_FGNTVK(gl)VAAPR_
ODC1	Ubiquitylation	K57		1.669	_WLK(gl)ALPR_
ODC1	Ubiquitylation	K115		0.685	_IIYANPCK(gl)QVSQIK_
ODC1	Ubiquitylation	K161		1.311	_IATDDSK(gl)AVCR_
PKD1	Phosphorylation	T867		0.841	_GT(ph)YHVRLEVNNTVSGAAAQADVR_
POU3F3	Ubiquitylation	K377	0.051	-0.035	_LK(gl)PLLNK_
PPAT	Ubiquitylation	K403		-1.376	_GNTISPIIK(gl)LLK_
PPAT	Ubiquitylation	K406		-1.376	_GNTISPIIK(gl)LLK_
PROX1	Phosphorylation	S511	0.460	0.502	_DRAS(ph)PESLDLTR_
PYGO2	Phosphorylation	S40		-0.276	_AGLQM(ox)KS(ph)PEKK_
RRM2B	Ubiquitylation	K424	2.394	-0.588	_TNFFEK(gl)R_
SALL1	Phosphorylation	S1119	-1.156	-1.235	_DTPTSHVPSGPLSSSATS(ph)PVLLPALPR_
SGPL1	Ubiquitylation	K107	-0.060		_NMSFLK(gl)VDKEYVK_
SGPL1	Ubiquitylation	K131	0.668		_LK(gl)EYSSMDAFWQEGR_
SGPL1	Ubiquitylation	K228		-0.506	_DLAFEK(gl)GIK_
SGPL1	Ubiquitylation	K231		-0.506	_DLAFEK(gl)GIK_
SIX1	Ubiquitylation	K53	0.475		_AK(gl)AVVAFHR_
SIX2	Ubiquitylation	K53	0.475		_AK(gl)AVVAFHR_
SLC12A1	Phosphorylation	S79		-0.757	_DGGGVRDEGPAAAGDGLGRPLGPTPSQS(ph)R_
SLC12A1	Ubiquitylation	K136	-0.018		_QTPADGEASGESEPAKGSEEAK(gl)GR_
SLC12A1	Ubiquitylation	K280	-0.876	0.485	_DAVVTYTAESK(gl)GVVK_
SLC12A1	Ubiquitylation	K284	-0.876		_DAVVTYTAESK(gl)GVVK_
SLC12A1	Ubiquitylation	K409	0.293	0.878	_K(gl)QGASPLPQGAQSR_
SLC12A1	Ubiquitylation	K833	0.031	0.510	_QAMK(gl)EMSIDQAK_
SLC12A1	Ubiquitylation	K841	-0.060	0.706	_EMSIDQAK(gl)YQR_
SLC12A1	Phosphorylation	S944		0.525	_LKEGLDISHLQGQEELLSSQEKS(ph)PGTK_
SLC12A1	Ubiquitylation	K948	1.471	0.675	_SPGTK(gl)DVVVSVEYSK_
SLC12A1	Ubiquitylation	K958	1.077	1.080	_DVVVSVEYSK(gl)K_
SLC12A1	Ubiquitylation	K959	1.579	1.080	_DVVVSVEYSKK(gl)_
SLC12A1	Ubiquitylation	K966	1.102		_KSDLDTSK(gl)PLSEKPITHK_
SLC12A1	Ubiquitylation	K971	1.154	-0.324	_KSDLDTSKPLSEK(gl)PITHK_
SLC12A1	Ubiquitylation	K983	0.798		_VEEEDGK(gl)TATQPLLKK_
SLC12A1	Ubiquitylation	K991	1.299	0.502	_TATQPLLK(gl)K_
SLC12A1	Ubiquitylation	K992	1.045		_K(gl)ESKGPIVPLNVADQK_
SLC12A1	Phosphorylation	S994	0.106	-0.409	_KES(ph)KGPIVPLNVADQK_
SLC12A1	Ubiquitylation	K995	1.109	0.084	_ESK(gl)GPIVPLNVADQK_
SLC12A1	Ubiquitylation	K1018	0.796		_LLEASTQFQKK(gl)_
TET2	Phosphorylation	S120	-0.232	0.141	_TVS(ph)EPSLSGLLQIK_
TGFBR1	Ubiquitylation	K449	-0.991		_VVCEQK(gl)LRPNIPNR_
TGFBR1	Ubiquitylation	K502	0.553	0.430	_TLSQLSQQEGIK(gl)M_
TMED10	Ubiquitylation	K146		-0.149	_NYEEIAK(gl)VEK_
TSC1	Phosphorylation	S505	0.141	0.350	_GGFDS(ph)PFYR_
WFS1	Phosphorylation	S32	1.184	1.098	_LNATAS(ph)LEQER_
WFS1	Ubiquitylation	K143		0.703	_EAVK(gl)LLR_