RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
BRCA1	2	0.200	-0.140	0.433			0.018	0.146
FOXO3	2	-0.410	-0.120
GTF2H2	2	0.890	-0.020	0.105	2.323	2.292	1.092	0.150
GTF2H2C	2			0.105	2.323	2.292	1.092	0.150
NFYA	1	2.320	-0.640
CSDE1	1	0.850	-0.360	0.302	-1.033	-0.820	-0.426	-0.036
RBL1	1	0.270	-0.950
TSC2	1	0.810	-0.710
TSC2	1	0.810	-0.710	-0.715
CCND1	1	-1.820	3.470
HDAC1	1	-1.980	4.450
HDAC1	1	-1.980	4.450	-0.122	0.307	0.969	0.094	0.191
S100A7	1	0.370	-0.020					-3.874
S100A7	1	2.090	-1.290					-3.874
FTH1	1	-0.230	0.610	2.863			0.755	1.309
FTH1	1	0.280	-0.310	2.863			0.755	1.309
NFYC	0	-1.080	1.710				-0.084	0.484
ITGA6	0	-0.530	0.420	-0.133			-0.561	-0.048
EP300	0	-1.210	1.320	-1.089			-1.694	-0.723
NDRG1	0	-1.240	1.600	-0.614			1.252	0.551
NDRG1	0	-1.240	1.600
SFXN3	0	1.200	-0.730				0.416	0.512
TBP	0	1.610	-1.170	-0.831
WNT5A	0
ID2	0	-0.080	-0.630
GADD45A	0	1.050	-0.170
ZBTB17	0	0.670	-0.540
CREB1	0	1.080	-0.800			-1.027
TJP2	0	0.160	0.070				-1.237	-1.460
TJP2	0	0.160	0.070	0.144			0.035	0.024
PPP2R4	0	1.550	-0.940
NFYB	0	-1.100	1.620				0.915
MXD4	0	1.700	-1.110
CDKN1A	0	1.080	-0.750
MAX	0	-0.780	0.530		-0.276	0.290
MAX	0	-0.780	0.530
MYC	0	0.170	0.550	-2.443	-0.949	-0.454		-1.290
SMAD4	0	0.420	-0.390		0.020	0.556		-0.485
ERBB2	0	-1.310	1.360
ALDH9A1	0	-0.700	0.710	0.196
ITGB1	0	0.390	-0.650				0.101	-0.036
GFI1	0	0.150	0.340
NDRG2	0	-0.250	0.880
SMAD3	0	-1.560	1.800
SMAD3	0	0.270	-0.340
TMEM126A	0	0.130	-0.220				0.225	-0.144
HDAC3	0	-0.790	1.070
BCL2	0	0.910	-0.740
SMAD2	0
SP1	0			0.404			0.333	0.650
ZFP36L1	0	1.190	-0.490

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ALDH9A1	Ubiquitylation	K54	-1.628		_VEPADASGTEK(gl)AFEPATGR_
ALDH9A1	Ubiquitylation	K92	0.502	0.859	_IWSQK(gl)SGMER_
BCL2	Ubiquitylation	K22	1.480		_YIHYK(gl)LSQR_
BRCA1	Phosphorylation	S123	0.465	0.445	_KENNSPEHLKDEVS(ph)IIQSM(ox)GYR_
BRCA1	Phosphorylation	S753	2.662	4.077	_VSNNAEDPKDLMLS(ph)GER_
BRCA1	Phosphorylation	S1009	0.733	1.028	_KNLLEENFEEHSM(ox)S(ph)PER_
BRCA1	Phosphorylation	S1546	1.821	2.105	_NYPS(ph)QEELIK_
BRCA1	Phosphorylation	S1564		3.065	_VVDVEEQQLEES(ph)GPHDLTETSYLPR_
BRCA1	Phosphorylation	S1664		1.120	_EKPELTAS(ph)TER_
CCND1	Ubiquitylation	K33		-0.490	_AMLK(gl)AEETCAPSVSYFK_
CCND1	Ubiquitylation	K46	-1.016	-0.036	_AEETCAPSVSYFK(gl)CVQK_
CCND1	Ubiquitylation	K95	-0.733	-0.137	_FLSLEPVK(gl)K_
CCND1	Ubiquitylation	K96	-0.846	-0.155	_FLSLEPVKK(gl)_
CCND1	Ubiquitylation	K238		0.245	_VIK(gl)CDPDCLR_
CDKN1A	Ubiquitylation	K188	-2.505	-1.077	_QTSMTDFYHSK(gl)R_
CREB1	Phosphorylation	S271	-0.979	-1.450	_TAPTSTIAPGVVM(ox)ASS(ph)PALPTQPAEEAAR_
CREB1	Ubiquitylation	K333	1.343		_ALK(gl)DLYCHK_
CSDE1	Ubiquitylation	K127	-1.399	-0.753	_TGK(gl)PIAVK_
CSDE1	Ubiquitylation	K132	-0.229		_TGKPIAVK(gl)LVK_
CSDE1	Ubiquitylation	K137	-0.951		_IK(gl)QEILPEER_
CSDE1	Ubiquitylation	K285	-0.577	1.525	_NGK(gl)EVATDVR_
CSDE1	Ubiquitylation	K323	-2.005	-1.398	_VPSK(gl)NQNDPLPGR_
CSDE1	Ubiquitylation	K334	-0.130		_IK(gl)VDFVIPK_
CSDE1	Ubiquitylation	K353	0.281		_SK(gl)VTLLEGDHVR_
CSDE1	Ubiquitylation	K410	0.593		_DGFGFIK(gl)CVDR_
CSDE1	Phosphorylation	S560	-0.057	0.159	_LLGRNS(ph)NSK_
CSDE1	Ubiquitylation	K694	0.626		_GDCLQK(gl)GESVK_
CSDE1	Ubiquitylation	K743	-1.247		_DQFGFINYEVGDSKK(gl)_
CSDE1	Ubiquitylation	K775	-0.518	1.078	_TGK(gl)CSACNVWR_
CSDE1	Ubiquitylation	K789	-1.573		_VCEGPK(gl)AVAAPRPDR_
CSDE1	Ubiquitylation	K804	-0.486	-0.563	_LK(gl)NITLDDASAPR_
EP300	Phosphorylation	S1038	-0.672	-0.349	_TEIKEEEDQPSTSATQSS(ph)PAPGQSK_
EP300	Phosphorylation	S1726	0.994	0.627	_LGLGLDDESNNQQAAATQS(ph)PGDSRR_
EP300	Phosphorylation	S2328	-1.092	0.725	_PQSQPPHSSPS(ph)PR_
ERBB2	Ubiquitylation	K200		-2.073	_ACHPCSPMCK(gl)GSR_
ERBB2	Ubiquitylation	K369		-0.742	_AVTSANIQEFAGCKK(gl)_
ERBB2	Ubiquitylation	K747	-0.505	-0.019	_GIWIPDGENVK(gl)IPVAIK_
ERBB2	Ubiquitylation	K854	-0.859		_NVLVK(gl)SPNHVK_
ERBB2	Phosphorylation	S1054	-0.476	-0.706	_S(ph)GGGDLTLGLEPSEEEAPR_
FOXO3	Phosphorylation	S12		-1.324	_(ac)AEAPASPAPLS(ph)PLEVELDPEFEPQSRPR_
FOXO3	Phosphorylation	S253		2.510	_AVS(ph)MDNSNKYTK_
FOXO3	Phosphorylation	S284	4.138	6.011	_AALQTAPESADDS(ph)PSQLSK_
FOXO3	Phosphorylation	S421		1.295	_GS(ph)GLGSPTSSFNSTVFGPSSLNSLR_
FOXO3	Phosphorylation	S425		1.471	_GSGLGS(ph)PTSSFNSTVFGPSSLNSLR_
FTH1	Phosphorylation	S228		0.272	_MGAPESGLAEYLFDKHTLGDS(ph)DNES_
GADD45A	Ubiquitylation	K12	-0.515	0.281	_TLEEFSAGEQK(gl)TER_
GADD45A	Ubiquitylation	K29		0.092	_VGDALEEVLSK(gl)ALSQR_
GFI1	Phosphorylation	S68	0.285	0.145	_DRLS(ph)PESQLTEAPDR_
GTF2H2	Ubiquitylation	K42	-0.223		_ATIEDILFKAK(gl)_
GTF2H2	Ubiquitylation	K77		-1.015	_TMEDQDLK(gl)PNR_
GTF2H2	Ubiquitylation	K116		-1.309	_RAEK(gl)LTELSGNPR_
GTF2H2C	Ubiquitylation	K42	-0.223		_ATIEDILFKAK(gl)_
GTF2H2C	Ubiquitylation	K77		-1.015	_TMEDQDLK(gl)PNR_
GTF2H2C	Ubiquitylation	K116		-1.309	_RAEK(gl)LTELSGNPR_
HDAC1	Ubiquitylation	K50	0.036		_K(gl)MEIYRPHK_
HDAC1	Ubiquitylation	K66		-0.593	_ANAEEMTK(gl)YHSDDYIK_
HDAC1	Ubiquitylation	K74	0.620	-1.473	_YHSDDYIK(gl)FLR_
HDAC1	Ubiquitylation	K89	0.749	-0.241	_SIRPDNMSEYSK(gl)QMQR_
HDAC1	Phosphorylation	S393	-1.133	-1.144	_M(ox)LPHAPGVQM(ox)QAIPEDAIPEES(ph)GDEDEDDPDKR_
HDAC1	Phosphorylation	S409	1.326	1.144	_ISICS(ph)SDKR_
HDAC1	Phosphorylation	S410	1.326	1.144	_ISICS(ph)SDKR_
HDAC1	Ubiquitylation	K412	0.642	-0.744	_ISICSSDK(gl)R_
HDAC3	Phosphorylation	S424		-0.354	_GPEENYSRPEAPNEFYDGDHDNDKES(ph)DVEI_
ID2	Phosphorylation	S14		-0.139	_NS(ph)LSDHSLGISR_
ITGA6	Ubiquitylation	K1116	0.715		_YIDNLEK(gl)K_
ITGA6	Ubiquitylation	K1117		1.453	_YIDNLEKK(gl)_
ITGB1	Ubiquitylation	K774	0.402		_MNAK(gl)WDTGENPIYK_
ITGB1	Ubiquitylation	K784	-0.172	0.350	_WDTGENPIYK(gl)SAVTTVVNPK_
ITGB1	Ubiquitylation	K794	0.755	0.604	_SAVTTVVNPK(gl)YEGK_
MAX	Phosphorylation	S2	0.341	-0.060	_(ac)S(ph)DNDDIEVES(ph)DEEQPR_
MAX	Phosphorylation	S2	0.510	0.568	_(ac)S(ph)DNDDIEVESDADKR_
MAX	Phosphorylation	S11	0.341	-0.060	_(ac)S(ph)DNDDIEVES(ph)DEEQPR_
MAX	Phosphorylation	S11	-0.408	0.069	_(ac)S(ph)DNDDIEVES(ph)DADKR_
MAX	Ubiquitylation	K57	-0.903	0.246	_DSVPSLQGEK(gl)ASR_
MXD4	Ubiquitylation	K99		-0.274	_TK(gl)AAGLVR_
MXD4	Ubiquitylation	K152		1.246	_HTTLSLLK(gl)R_
MXD4	Ubiquitylation	K172		0.992	_ALSIK(gl)EQLQQEHR_
MYC	Phosphorylation	S20	-1.444	-1.145	_PLNVS(ph)FTNR_
MYC	Phosphorylation	T72	-1.699	-1.813	_FELLPT(ph)PPLS(ph)PSRR_
MYC	Phosphorylation	S76	-1.777	-1.435	_FELLPTPPLS(ph)PSR_
MYC	Phosphorylation	S81		0.459	_S(ph)GLCSPSYVAVTPFSLR_
MYC	Phosphorylation	S85	0.199	0.073	_SGLCS(ph)PSYVAVTPFSLR_
MYC	Ubiquitylation	K162	-2.475	-1.259	_LVSEK(gl)LASYQAAR_
MYC	Phosphorylation	S295		-0.903	_SESGS(ph)PSAGGHSKPPHSPLVLK_
MYC	Phosphorylation	S307		-1.486	_SES(ph)GSPSAGGHSKPPHS(ph)PLVLK_
MYC	Ubiquitylation	K340		-2.449	_VK(gl)LDSVR_
MYC	Ubiquitylation	K403		-3.432	_DQIPELENNEK(gl)APK_
NDRG1	Phosphorylation	S2	0.483	0.404	_(ac)S(ph)REMQDVDLAEVKPLVEK_
NDRG1	Ubiquitylation	K14	-1.017		_EMQDVDLAEVK(gl)PLVEK_
NDRG1	Ubiquitylation	K285		-2.380	_TTLLK(gl)MADCGGLPQISQPAK_
NDRG1	Ubiquitylation	K300	-0.507	-0.742	_MADCGGLPQISQPAK(gl)LAEAFK_
NDRG1	Phosphorylation	S326		0.379	_S(ph)RTAS(ph)GSSVTSLDGTR_
NDRG1	Phosphorylation	T328	0.330	0.373	_SRT(ph)ASGSSVTSLDGTR_
NDRG1	Phosphorylation	S330	0.313	-0.175	_TAS(ph)GSSVTSLDGTR_
NDRG1	Phosphorylation	S332	0.247		_TASGS(ph)SVTSLDGTR_
NDRG1	Phosphorylation	S333	-0.356	-0.210	_TAS(ph)GSS(ph)VTSLDGTR_
NDRG1	Phosphorylation	T335	0.708	-0.841	_TAS(ph)GSSVT(ph)SLDGTR_
NDRG1	Phosphorylation	S336	-0.491	-1.009	_TAS(ph)GSSVTS(ph)LDGTR_
NDRG1	Phosphorylation	S364	-0.164	-0.457	_S(ph)HTSEGAHLDITPNSGAAGNSAGPK_
NDRG1	Phosphorylation	T366	-0.144	-0.451	_SHT(ph)SEGAHLDITPNSGAAGNSAGPK_
NDRG1	Phosphorylation	S367	-0.333		_SHTS(ph)EGAHLDITPNSGAAGNSAGPK_
NDRG1	Phosphorylation	T375	-1.996	-1.540	_SHTSEGAHLDIT(ph)PNSGAAGNSAGPK_
NDRG2	Phosphorylation	S328	0.778	-0.121	_S(ph)RTASLTSAASVDGNR_
NDRG2	Phosphorylation	S332	0.366	0.448	_TAS(ph)LTSAASVDGNR_
NDRG2	Phosphorylation	S338	0.765	-0.768	_TASLTSAAS(ph)VDGNR_
NFYA	Phosphorylation	S326		-0.045	_EKDS(ph)PHMQDPNQADEEAMTQIIR_
NFYC	Ubiquitylation	K36	-0.455	-0.045	_NLTVK(gl)DFR_
PPP2R4	Ubiquitylation	K138		-0.096	_FGNK(gl)AYR_
PPP2R4	Ubiquitylation	K331	-0.624		_MYK(gl)AECLEK_
RBL1	Phosphorylation	S640	-0.916	-1.810	_DMQPLS(ph)PISVHER_
RBL1	Phosphorylation	S749	0.935	1.566	_VKS(ph)PVSLTAHSLIGASPK_
RBL1	Ubiquitylation	K885		-0.844	_SVLLK(gl)SIPR_
SMAD2	Phosphorylation	T8	-0.896	-0.885	_(ac)SSILPFT(ph)PPVVK_
SMAD2	Ubiquitylation	K13	-0.058		_(ac)SSILPFTPPVVK(gl)R_
SMAD3	Ubiquitylation	K13	-0.704		_(ac)SSILPFTPPIVK(gl)R_
SP1	Phosphorylation	S2	0.834	1.114	_(ac)S(ph)DQDHSMDEMTAVVK_
SP1	Phosphorylation	S7	0.586	0.217	_(ac)SDQDHS(ph)MDEMTAVVK_
SP1	Phosphorylation	S56	-0.154		_SSSTGSSSSTGGGGQES(ph)QPSPLALLAATCSR_
SP1	Phosphorylation	S59	-0.217	-0.135	_SSSTGSSSSTGGGGQESQPS(ph)PLALLAATCSR_
TBP	Ubiquitylation	K181	-0.140	-0.577	_LDLK(gl)TIALR_
TBP	Ubiquitylation	K225		-0.596	_MVCTGAK(gl)SEEQSR_
TJP2	Phosphorylation	S161	-0.169	-0.024	_VQVAALQAS(ph)PPLDQDDR_
TJP2	Phosphorylation	S205	0.118	0.563	_SWEDS(ph)PER_
TJP2	Phosphorylation	S275	0.891	0.690	_GRS(ph)IDQDYER_
TJP2	Phosphorylation	S297	0.478	0.579	_AYS(ph)PEYR_
TJP2	Phosphorylation	S446		0.631	_SFS(ph)PEER_
TJP2	Phosphorylation	S471	-0.863	0.159	_ERPS(ph)SREDTPSR_
TJP2	Phosphorylation	S472	-0.715	0.193	_ERPSS(ph)REDTPSR_
TJP2	Ubiquitylation	K506	-0.355	-0.981	_STGDIAGTVVPETNK(gl)EPR_
TJP2	Ubiquitylation	K520	-1.549		_YQEEPPAPQPK(gl)AAPR_
TJP2	Ubiquitylation	K800	-0.173	0.403	_DAGSEK(gl)STGVVR_
TJP2	Phosphorylation	S992	-0.733		_SSEPVQHEES(ph)IRKPSPEPR_
TJP2	Phosphorylation	S997	-1.075	-0.616	_SSEPVQHEESIRKPS(ph)PEPR_
TJP2	Phosphorylation	S1017	-1.379	-1.918	_DNS(ph)PPPAFKPEPPK_
TJP2	Ubiquitylation	K1047	-0.374	-0.833	_SYEYK(gl)SNPSAVAGNETPGASTK_
TJP2	Phosphorylation	S1187		0.856	_GS(ph)YGSDAEEEEYRQQLSEHSK_
TJP2	Phosphorylation	S1190	0.754	0.727	_GSYGS(ph)DAEEEEYRQQLSEHSK_
TSC2	Ubiquitylation	K3		-1.397	_(ac)AK(gl)PTSKDSGLK_
TSC2	Ubiquitylation	K14		-1.297	_DSGLKEK(gl)FK_
TSC2	Ubiquitylation	K69		0.051	_MIGQICEVAK(gl)TK_
TSC2	Ubiquitylation	K71		-0.157	_MIGQICEVAKTK(gl)_
TSC2	Ubiquitylation	K258		-0.278	_ELCEPCWK(gl)LMR_
TSC2	Ubiquitylation	K634		1.610	_LGLPNK(gl)DGVVR_
TSC2	Phosphorylation	S950	-0.152	-0.529	_STS(ph)LNERPK_
TSC2	Phosphorylation	S1064		-0.927	_SLLGLDSGELQSGPESSSS(ph)PGVHVR_
TSC2	Phosphorylation	S1248		-0.604	_SNTDSAVVMEEGS(ph)PGEVPVLVEPPGLEDVEAALGMDRR_
TSC2	Phosphorylation	S1329	-0.120		_S(ph)SSSPELQTLQDILGDPGDK_
TSC2	Phosphorylation	S1331	-0.262		_SSS(ph)SPELQTLQDILGDPGDKADVGR_
TSC2	Phosphorylation	S1332		-0.063	_SSSS(ph)PELQTLQDILGDPGDK_
TSC2	Phosphorylation	S1355	0.174	0.351	_ADVGRLS(ph)PEVK_
TSC2	Phosphorylation	S1362		0.859	_S(ph)QSGTLDGESAAWSASGEDSR_
TSC2	Phosphorylation	S1364	0.522	0.550	_SQS(ph)GTLDGESAAWSASGEDSR_
TSC2	Phosphorylation	T1366	0.137		_SQSGT(ph)LDGESAAWSASGEDSR_
TSC2	Phosphorylation	S1396		0.498	_S(ph)PSGLRPR_
TSC2	Phosphorylation	S1743	0.596		_RLISS(ph)VEDFTEFV_
WNT5A	Ubiquitylation	K268		-0.304	_VGDALK(gl)EK_
ZBTB17	Phosphorylation	T119	-0.130	-0.375	_SLAEPAT(ph)SPGGNAEALATEGGDK_
ZBTB17	Phosphorylation	S120	-0.091	-0.316	_SLAEPATS(ph)PGGNAEALATEGGDK_
ZFP36L1	Ubiquitylation	K103		-1.487	_LLPTQK(gl)QPGGGQVNSSR_