RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
BRCA1	2	0.200	-0.140	0.433			0.018	0.146
CAND1	2	-0.720	0.390	-1.046	1.059	-0.316	0.107	0.156
UBE4B	2	0.250	-0.730	-0.349
FBXO4	2	-0.890	1.280
PPIL2	1	-1.310	2.810				-0.614	-0.728
WWP1	1	-1.400	1.340
WWP1	1	0.850	-1.030
WWP1	1	-1.400	1.340	-0.346			0.023	0.613
WWP1	1	0.850	-1.030	-0.346			0.023	0.613
FBXO21	1	-1.340	2.930
LMO7	1	-1.860	3.170				0.378	0.053
LMO7	1	-1.860	3.170				0.180	0.278
FBXO11	1	2.850	-1.250	-0.514				0.964
RNF168	1	-0.220	-0.130	2.341
RNF168	1	0.210	-0.350	2.341
SUGT1	1	2.450	-0.880				-1.684	0.384
SUGT1	1	2.450	-0.880	-0.106
MIB2	1	1.120	-0.830
FBXL3	0	-0.990	1.600
UBR2	0	-0.250	0.600	-1.757
DCUN1D1	0	1.420	-0.510
NEDD4	0	-1.320	1.730
FBXW11	0	-0.780	0.530	0.532			-1.791	0.313
BRAP	0	1.580	-1.050
FBXO7	0	1.380	-0.260	-0.647
STUB1	0	-1.420	2.320	-0.284			0.442	-0.104
RNF40	0	0.590	-0.260	0.621	0.214	0.634	-0.322	-0.150
CBLL1	0	-1.090	1.450				-1.743
PRPF19	0	-0.460	0.190	-0.179	-0.151	-0.246
RNF8	0	1.030	-0.670
FBXL5	0	-1.220	1.350
RNF2	0	0.560	-0.930	-0.061	-0.694	0.392	0.384	0.526
RBBP6	0	0.480	-0.250				-0.003	0.093
TRAF7	0	-1.410	2.040
TRIM21	0	-0.230	-0.010		-0.266	-0.252
BARD1	0	0.470	0.260
RNF20	0	1.470	-0.660	1.382	0.059	0.693		-0.069
NSMCE2	0
UBR1	0	-0.510	0.110
RCHY1	0	-0.710	1.020
ARIH1	0	-0.910	0.810		0.000	0.501		-0.470
BMI1	0	0.900	-1.150	0.182
UBE2E1	0	1.580	-0.610				-0.786	-0.414
UBE2L3	0	-0.730	0.630				1.031	0.887
UBE2L3	0	-0.730	0.630
UBE2V1	0	-0.460	-0.280
UBE2V1	0	0.870	-1.000
UBE2V1	0	-0.460	-0.280
UBE2V1	0	0.870	-1.000
UBE2V1	0	-0.460	-0.280
UBE2V1	0	0.870	-1.000

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ARIH1	Ubiquitylation	K144	0.151		_ILLSHFNWDKEK(gl)_
ARIH1	Ubiquitylation	K168	0.408		_LFAECHVINPSK(gl)K_
ARIH1	Ubiquitylation	K169		0.284	_LFAECHVINPSKK(gl)_
ARIH1	Ubiquitylation	K253	0.719	0.280	_LITDSK(gl)VK_
ARIH1	Ubiquitylation	K255	0.477	0.724	_LITDSKVK(gl)_
ARIH1	Ubiquitylation	K293	-0.440	-0.162	_VQYPDAK(gl)PVR_
ARIH1	Ubiquitylation	K316	0.106	-0.184	_QFCFNCGENWHDPVK(gl)CK_
ARIH1	Ubiquitylation	K346	-0.779		_ECPK(gl)CHVTIEK_
ARIH1	Ubiquitylation	K398	0.516	0.200	_YNEDDAK(gl)AAR_
ARIH1	Ubiquitylation	K439	0.331	-0.327	_LYAQVK(gl)QK_
ARIH1	Ubiquitylation	K441		0.317	_LYAQVKQK(gl)_
ARIH1	Ubiquitylation	K522	-0.086	0.005	_DISQDSLQDIK(gl)QK_
ARIH1	Ubiquitylation	K524		0.167	_DISQDSLQDIKQK(gl)_
BARD1	Phosphorylation	S186	0.193	0.942	_DASAQQDSYEFVSPS(ph)PPADVSER_
BRAP	Phosphorylation	S157	0.033	-0.074	_ECINAAPDS(ph)PSK_
BRAP	Phosphorylation	S159	-0.208	-0.105	_ECINAAPDSPS(ph)K_
BRAP	Ubiquitylation	K425	0.929		_TDGK(gl)IVQYECEGDTCQEEK_
BRAP	Ubiquitylation	K466	0.347		_IYWENK(gl)IVR_
BRCA1	Phosphorylation	S123	0.465	0.445	_KENNSPEHLKDEVS(ph)IIQSM(ox)GYR_
BRCA1	Phosphorylation	S753	2.662	4.077	_VSNNAEDPKDLMLS(ph)GER_
BRCA1	Phosphorylation	S1009	0.733	1.028	_KNLLEENFEEHSM(ox)S(ph)PER_
BRCA1	Phosphorylation	S1546	1.821	2.105	_NYPS(ph)QEELIK_
BRCA1	Phosphorylation	S1564		3.065	_VVDVEEQQLEES(ph)GPHDLTETSYLPR_
BRCA1	Phosphorylation	S1664		1.120	_EKPELTAS(ph)TER_
CAND1	Ubiquitylation	K51	0.633		_VVK(gl)MILK_
CAND1	Ubiquitylation	K60	0.342	0.471	_LLEDK(gl)NGEVQNLAVK_
CAND1	Ubiquitylation	K355	1.318	1.197	_AAAK(gl)CLDAVVSTR_
CAND1	Ubiquitylation	K574	0.835	1.669	_DLFTCTIK(gl)R_
CAND1	Ubiquitylation	K577	0.292	0.893	_LK(gl)AADIDQEVKER_
CAND1	Ubiquitylation	K826	1.544		_EGPAVVGQFIQDVK(gl)NSR_
CBLL1	Phosphorylation	S290	1.073	0.088	_KHS(ph)NLITVPIQDDSNSGAR_
DCUN1D1	Ubiquitylation	K57	0.855	0.461	_ESVK(gl)GSLDR_
DCUN1D1	Ubiquitylation	K63	0.580	0.673	_K(gl)KLEQLYNR_
DCUN1D1	Ubiquitylation	K64	-0.100	0.546	_K(gl)LEQLYNR_
DCUN1D1	Ubiquitylation	K143	-0.193	-0.429	_AQIPK(gl)MEQELKEPGR_
DCUN1D1	Ubiquitylation	K149	0.303	0.731	_M(ox)EQELK(gl)EPGR_
FBXL3	Ubiquitylation	K321		-0.415	_SVSK(gl)DVLGR_
FBXL5	Ubiquitylation	K100		-0.676	_NVK(gl)NEYEQLNYAK_
FBXL5	Ubiquitylation	K162		-1.311	_VIAQHCSQK(gl)DTAELLR_
FBXL5	Ubiquitylation	K403		-1.057	_ITDVALEK(gl)ISR_
FBXL5	Ubiquitylation	K582		-0.131	_GK(gl)DLIYFGSEK_
FBXO11	Ubiquitylation	K871	-0.905	0.008	_NAICVNCIKK(gl)_
FBXO21	Ubiquitylation	K74		1.286	_VWK(gl)EQFR_
FBXO21	Ubiquitylation	K356		0.926	_GK(gl)QLTVK_
FBXO21	Ubiquitylation	K397	-0.258	0.758	_MVGNLLSLGK(gl)R_
FBXO4	Phosphorylation	S12	-0.857	-0.593	_SGTNS(ph)PPPPFSDWGR_
FBXO4	Ubiquitylation	K40		0.111	_TFWQSVSK(gl)ER_
FBXO4	Phosphorylation	S48	2.764	2.416	_TTS(ph)REEVDEAASTLTR_
FBXO7	Ubiquitylation	K393		-0.096	_VQDTDWK(gl)ELYR_
FBXW11	Ubiquitylation	K466		0.325	_IVSGAYDGKIK(gl)_
LMO7	Phosphorylation	S246	0.818	0.670	_EDS(ph)FESLDSLGSR_
LMO7	Phosphorylation	S867	0.911	0.695	_VTTEIQLPSQS(ph)PVEEQSPASLSSLR_
LMO7	Phosphorylation	S988	-0.159	-0.664	_LPS(ph)PTSPFSSLSQDQAATSK_
LMO7	Phosphorylation	T990		-0.274	_EVAATEEDVTRLPSPT(ph)SPFSSLSQDQAATSK_
LMO7	Phosphorylation	S1026		0.510	_ATLSSTSGLDLMSESGEGEIS(ph)PQR_
LMO7	Phosphorylation	S1421	0.429		_S(ph)RSTTELDDYSTNK_
LMO7	Phosphorylation	S1423	0.398	0.356	_SRS(ph)TTELDDYSTNK_
LMO7	Phosphorylation	T1424	0.676		_ST(ph)TELDDYSTNK_
LMO7	Phosphorylation	T1425		0.570	_STT(ph)ELDDYSTNK_
LMO7	Phosphorylation	S1493	-0.194	0.008	_SAS(ph)VNKEPVSLPGIM(ox)R_
LMO7	Phosphorylation	S1510	0.591	0.370	_RGES(ph)LDNLDSPR_
LMO7	Phosphorylation	S1593	0.308	0.176	_SHS(ph)PSASQSGSQLR_
MIB2	Phosphorylation	S366	1.337	0.856	_RVS(ph)ADSQPFQHGDK_
MIB2	Ubiquitylation	K459		3.313	_VIGDLDTVK(gl)R_
MIB2	Ubiquitylation	K899	-0.234	-0.560	_VLK(gl)ALQGCAQR_
NEDD4	Phosphorylation	Y751		-0.924	_RGSLQAY(ph)TFEEQPTLPVLLPTSSGLPPGWEEK_
NEDD4	Ubiquitylation	K874	0.127		_LK(gl)IPAHLR_
NEDD4	Ubiquitylation	K882	-0.919	0.114	_GK(gl)TSLDTSNDLGPLPPGWEER_
NSMCE2	Ubiquitylation	K183	1.381		_NK(gl)VCGHTYEEDAIVR_
PRPF19	Ubiquitylation	K122	0.200		_LTK(gl)EVTAAR_
PRPF19	Ubiquitylation	K261	-1.023	0.257	_SSEQILATLK(gl)GHTK_
RBBP6	Phosphorylation	S360	0.273	0.207	_NLQPLMRS(ph)PISR_
RBBP6	Phosphorylation	S516	-0.967	-0.408	_LGYLVS(ph)PPQQIR_
RBBP6	Phosphorylation	S772	0.920	1.037	_SRS(ph)PQAFR_
RBBP6	Ubiquitylation	K809	-1.748		_EVPPPYDMK(gl)AYYGR_
RBBP6	Ubiquitylation	K824	-0.969		_SVDFRDPFEK(gl)ER_
RBBP6	Ubiquitylation	K843	0.400		_YYK(gl)GYAAGAQPR_
RBBP6	Phosphorylation	S861	0.069	-0.031	_PSANRENFS(ph)PER_
RBBP6	Phosphorylation	S873	0.127	-1.457	_FLPLNIRNS(ph)PFTR_
RBBP6	Ubiquitylation	K901	-0.567		_NIGSNYPEK(gl)LSAR_
RBBP6	Phosphorylation	T984	-0.143	-0.647	_DDAT(ph)PVRDEPMDAESITFK_
RBBP6	Phosphorylation	S1179	-0.720	-0.834	_LEVTEIVKPS(ph)PK_
RBBP6	Phosphorylation	S1221	-0.752	-0.396	_IGS(ph)TENISNTKEPSEK_
RBBP6	Phosphorylation	T1269		0.848	_VTGTEGSSSTLVDYT(ph)STSSTGGSPVRK_
RBBP6	Phosphorylation	S1277	0.737	0.455	_VTGTEGSSSTLVDYTSTSSTGGS(ph)PVR_
RBBP6	Phosphorylation	S1328	0.968	0.961	_WDKDDFES(ph)EEEDVK_
RBBP6	Phosphorylation	S1463	-0.937	-1.513	_ASS(ph)NKDFTPNR_
RBBP6	Phosphorylation	T1468	-0.732	-1.781	_ASSNKDFT(ph)PNR_
RCHY1	Ubiquitylation	K135	0.341		_HK(gl)CIENVSR_
RNF168	Phosphorylation	S134		0.945	_RAS(ph)EEEENKASEEYIQR_
RNF168	Ubiquitylation	K227	-1.466	-1.424	_NTGDIQK(gl)YLTPK_
RNF168	Ubiquitylation	K232		-1.889	_YLTPK(gl)SQFGSASHSEAVQEVR_
RNF168	Ubiquitylation	K254	-1.121		_DSVSK(gl)DIDSSDRK_
RNF168	Ubiquitylation	K334	-0.908		_ELCVLSHERPK(gl)TR_
RNF168	Ubiquitylation	K341	-1.460	-1.996	_VPYSK(gl)ETAVMPCGR_
RNF168	Ubiquitylation	K468	-0.810	-1.113	_QK(gl)GSPDEYHLR_
RNF168	Ubiquitylation	K548	-2.498		_VSK(gl)SAHSLQPSISQK_
RNF2	Ubiquitylation	K65	0.105		_NTMTTK(gl)ECLHR_
RNF2	Ubiquitylation	K275	1.064		_SK(gl)GESNQMNLDTASEK_
RNF20	Phosphorylation	S136	-0.065	-0.170	_ALVVPEPEPDS(ph)DSNQER_
RNF20	Phosphorylation	S138	-0.540	-0.691	_ALVVPEPEPDSDS(ph)NQER_
RNF20	Phosphorylation	S522		-0.414	_SGSALLQS(ph)QSSTEDPKDEPAELKPDSEDLSSQSSASK_
RNF20	Phosphorylation	S524	-0.171	-0.459	_SGSALLQSQS(ph)STEDPKDEPAELKPDSEDLSSQSSASK_
RNF40	Ubiquitylation	K189		-0.308	_MEFSK(gl)AAVSR_
RNF40	Ubiquitylation	K420	0.767		_GLLLATK(gl)NSHLR_
RNF40	Ubiquitylation	K860		-0.901	_SQALELNK(gl)R_
RNF8	Phosphorylation	S157	-0.377	-0.438	_KFS(ph)LDELAGPGAEGPSNLK_
STUB1	Phosphorylation	S19	0.041	0.082	_LGAGGGS(ph)PEKS(ph)PSAQELK_
STUB1	Ubiquitylation	K22	0.017	-0.536	_LGAGGGSPEK(gl)SPSAQELK_
STUB1	Phosphorylation	S23	0.078	0.165	_LGAGGGS(ph)PEKS(ph)PSAQELK_
STUB1	Ubiquitylation	K30	-0.704	-0.765	_SPSAQELK(gl)EQGNR_
STUB1	Ubiquitylation	K41	-0.158		_K(gl)YPEAAACYGR_
STUB1	Ubiquitylation	K125	0.325	-0.191	_AYSLAK(gl)EQR_
STUB1	Phosphorylation	S273	-0.431	-0.250	_S(ph)PLTQEQLIPNLAMK_
SUGT1	Phosphorylation	T265	0.177	0.646	_LEGQGDVPT(ph)PK_
SUGT1	Phosphorylation	S281	1.261	-0.437	_NLYPSSS(ph)PYTR_
SUGT1	Ubiquitylation	K325	0.936		_LFQQIYSDGSDEVK(gl)R_
SUGT1	Ubiquitylation	K349	-0.433		_SFMESGGTVLSTNWSDVGK(gl)R_
TRAF7	Phosphorylation	S108	-0.756	-0.573	_STFS(ph)LPEEEEEPEPLVFAEQPSVK_
TRAF7	Ubiquitylation	K160	-0.315		_SEK(gl)CPVDNVK_
TRAF7	Ubiquitylation	K199	-1.430	-1.568	_VAGSGK(gl)PPIFEVDPR_
UBE2E1	Ubiquitylation	K43	0.668	0.523	_NSK(gl)LLSTSAK_
UBE2E1	Ubiquitylation	K50	0.531		_LLSTSAK(gl)R_
UBE2E1	Ubiquitylation	K54	-1.325		_IQK(gl)ELADITLDPPPNCSAGPK_
UBE2L3	Ubiquitylation	K9	1.366		_LMK(gl)ELEEIRK_
UBE2L3	Ubiquitylation	K20	1.131	0.956	_CGMK(gl)NFR_
UBE2L3	Ubiquitylation	K64	-1.229		_IEINFPAEYPFK(gl)PPK_
UBE2L3	Ubiquitylation	K73	0.293	0.015	_TK(gl)IYHPNIDEK_
UBE2L3	Ubiquitylation	K96	-0.965		_GQVCLPVISAENWK(gl)PATK_
UBE2L3	Ubiquitylation	K131	0.407	0.848	_ADLAEEYSK(gl)DR_
UBE2L3	Ubiquitylation	K138	0.523		_FCK(gl)NAEEFTK_
UBE2L3	Ubiquitylation	K146	0.357	0.853	_NAEEFTKK(gl)_
UBE2L3	Ubiquitylation	K150	0.275		_YGEK(gl)RPVD_
UBE2L3	Ubiquitylation	K235	0.591	0.087	_TVDTK(gl)QAQDLAR_
UBE2L3	Ubiquitylation	K254	-0.450	-0.156	_SYGIPFIETSAK(gl)TR_
UBE2V1	Ubiquitylation	K10	0.254	-0.318	_(ac)AATTGSGVK(gl)VPR_
UBE2V1	Ubiquitylation	K129	0.440	0.709	_LMMSK(gl)ENMK_
UBE2V1	Ubiquitylation	K291	-0.071	0.214	_IYSLK(gl)IECGPK_
UBE4B	Phosphorylation	T22		1.345	_LAGGQT(ph)SQPTTPLTS(ph)PQR_
UBE4B	Phosphorylation	S23		1.432	_LAGGQTS(ph)QPTTPLTS(ph)PQR_
UBE4B	Phosphorylation	T30		1.919	_LAGGQTSQPTTPLT(ph)SPQR_
UBE4B	Phosphorylation	S31	2.242	2.282	_LAGGQTSQPTTPLTS(ph)PQR_
UBE4B	Phosphorylation	S103	0.724		_S(ph)QSM(ox)DIDGVSCEK_
UBE4B	Phosphorylation	S105	0.708	0.724	_SQS(ph)MDIDGVSCEK_
UBE4B	Ubiquitylation	K493		-0.336	_VGIEEK(gl)K_
UBE4B	Ubiquitylation	K494		-0.336	_VGIEEKK(gl)_
UBE4B	Ubiquitylation	K626	-2.065	-0.337	_LWLPK(gl)SLSPGCGR_
UBE4B	Ubiquitylation	K845	-0.856	0.291	_TVEDLK(gl)NNESQWK_
UBE4B	Ubiquitylation	K852	-1.893	-0.279	_TVEDLKNNESQWK(gl)DSPLATR_
UBE4B	Ubiquitylation	K1254	0.749	0.806	_STIAIEK(gl)FK_
UBR1	Phosphorylation	T21		-0.158	_MEISAELPQT(ph)PQR_
UBR1	Ubiquitylation	K596		0.045	_TVVQSCGHSLETK(gl)SYR_
UBR1	Ubiquitylation	K859	-2.925		_KQENK(gl)DEALPPPPPPEFCPAFSK_
UBR1	Ubiquitylation	K1681		-1.186	_VVLVEGK(gl)AR_
UBR1	Ubiquitylation	K1703	-1.402		_GCAYPAPYLDEYGETDPGLK(gl)R_
UBR2	Ubiquitylation	K779	-0.314	-0.531	_FSPGVGQVNATDEIK(gl)R_
UBR2	Phosphorylation	S1006	0.165	0.550	_ESS(ph)PTSPVAETEGTIMEESSR_
UBR2	Phosphorylation	S1009		0.446	_ESSPTS(ph)PVAETEGTIMEESSR_
UBR2	Ubiquitylation	K1138		-1.146	_STVLSK(gl)NR_
UBR2	Ubiquitylation	K1187	0.360	0.824	_YFDSVQAK(gl)EQRR_
WWP1	Ubiquitylation	K66	-0.890		_WK(gl)QPLTVIVTPVSK_
WWP1	Ubiquitylation	K328	-0.364	0.487	_SSSAFEAAK(gl)SR_
WWP1	Ubiquitylation	K350	0.049	0.396	_VYYVDHVEK(gl)R_
WWP1	Ubiquitylation	K446	-1.514	-1.539	_EFDPLGPLPPGWEK(gl)R_
WWP1	Ubiquitylation	K478	-1.265		_SQGQLNEK(gl)PLPEGWEMR_
WWP1	Ubiquitylation	K513	-0.564	1.593	_TGK(gl)SALDNGPQIAYVR_
WWP1	Ubiquitylation	K536	-1.895	1.126	_SSVTK(gl)GGPQIAYER_
WWP1	Ubiquitylation	K861	-0.810	0.596	_VGK(gl)ENWLPR_