bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: FBXO4

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
FBXO4 2 6.571 -0.890 1.280

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
FBXO4 Phosphorylation S48 2.764 2.416 _TTS(ph)REEVDEAASTLTR_
FBXO4 Ubiquitylation K40 0.111 _TFWQSVSK(gl)ER_
FBXO4 Phosphorylation S12 -0.857 -0.593 _SGTNS(ph)PPPPFSDWGR_

Background Information for FBXO4:


Pubmed-FBXO4 »
Uniprot-FBXO4 »
Biogrid-FBXO4 »
ProteomicsDB-FBXO4 »

Tumorportal-FBXO4 »
COSMIC-FBXO4 »
GenomeRNAi-FBXO4 »
Genecards-FBXO4


Protein-protein Interactions for FBXO4
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait FBXO4 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in FBXO4
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members F-box_dom IPR001810 0


Protein complexes (CORUM database) featuring FBXO4
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring FBXO4
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005737 cytoplasm Database 12.81
Category members Pathway Pathway_11 REACTOME_METABOLISM_OF_PROTEINS 0 12.01
Category members GO Category GO:0000723 telomere maintenance Database 6.3
Category members Pathway Pathway_621 REACTOME_ADAPTIVE_IMMUNE_SYSTEM 0 4.72
Category members GO Category GO:0006511 ubiquitin-dependent protein catabolic process Database 3.57
Category members Pathway Pathway_458 REACTOME_IMMUNE_SYSTEM 0 3
Category members Pathway Pathway_764 REACTOME_CLASS_I_MHC_MEDIATED_ANTIGEN_PROCESSING_PRESENTATION 0 2.56
Category members GO Category GO:0000209 protein polyubiquitination Database 2.46
Category members Pathway Pathway_888 KEGG_UBIQUITIN_MEDIATED_PROTEOLYSIS 0 2.22
Category members Pathway Pathway_832 REACTOME_ANTIGEN_PROCESSING_UBIQUITINATION_PROTEASOME_DEGRADATION 0 1.58
Category members Pathway Pathway_742 REACTOME_PROTEIN_FOLDING 0 0.9
Category members Pathway Pathway_741 REACTOME_ASSOCIATION_OF_TRIC_CCT_WITH_TARGET_PROTEINS_DURING_BIOSYNTHESIS 0 0.29
Category members GO Category GO:0000151 ubiquitin ligase complex Database 0.24
Category members GO Category GO:0004842 ubiquitin-protein ligase activity Database 0.24
Category members GO Category GO:0019005 SCF ubiquitin ligase complex Database 0.09
Category members GO Category GO:0016567 protein ubiquitination Database 0.07
Category members GO Category GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process Database 0.05
Category members GO Category GO:0031398 positive regulation of protein ubiquitination Database 0
Category members GO Category GO:0042803 protein homodimerization activity Database 0


.

© Copyright Svejstrup Laboratory 2015