RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
UBB	3			-0.309	0.131	-0.009
COX7A2L	2	2.010	-0.800				0.968	1.562
VDAC3	1	-0.740	1.190		1.595
VDAC3	1	-0.740	1.190				0.378	0.229
ATP5B	1	2.320	-1.410	0.568	0.424	-1.201
COX7A2	1	-0.430	0.430				0.943	2.309
NDUFA8	1	0.870	-0.830	-0.305			-0.739	-0.548
SLC25A4	1	0.410	-0.470
SLC25A4	1	0.410	-0.470				0.878	0.610
SLC25A6	1	0.700	-1.050	0.334	2.424
UQCRQ	1	-2.130	4.340				0.883	0.707
NDUFS5	1	2.110	-0.840				0.239	0.358
SLC25A4	1	0.410	-0.470	0.334	2.424
PPID	1	-1.370	2.540	0.555			-0.303	-0.018
UBE2G2	1	2.190	-0.930
VDAC1	1	-1.570	2.490		1.900	-1.029
VDAC1	1	-1.570	2.490	0.739
SLC25A5	0	1.020	-0.380	0.159	1.543	-0.331
UQCRC1	0	-0.810	1.500	1.170
NDUFS1	0	-0.550	0.770	0.388	-0.330	-1.498	0.368	0.186
NDUFB4	0	-0.070	-0.540	-0.250			-0.592	-0.035
SDHA	0	1.350	-1.030	0.223			0.787	0.745
SDHA	0	1.350	-1.030	0.602	0.333	-0.951	0.718	0.496
ATP5D	0	-0.180	0.130				0.149	0.224
NDUFB7	0	0.910	-0.950				-0.061	0.245
NDUFS8	0	0.480	0.100	0.556			0.300	0.534
COX6A1	0	-0.090	0.070					0.157
NDUFS7	0	1.220	-0.670	-0.853			-0.390	-1.647
NDUFS7	0	1.220	-0.670		0.036	-0.063
HTRA2	0	1.220	-0.530		0.602		-0.023	1.287
PARK7	0	-0.660	0.930
ATP5F1	0						0.721	0.419
SDHB	0	-0.720	0.810	-0.156	-0.332	-1.201	0.467	0.434
NDUFB3	0	0.030	0.250				0.049	0.067
NDUFA1	0	-0.970	0.750
COX6B1	0	0.040	0.480				0.423
NDUFA5	0	1.050	-0.770	0.227	0.106	-0.698	0.331	-0.137
NDUFA10	0	-0.010	-0.040	-0.338			0.377	0.103
NDUFA10	0	-0.010	-0.040		-0.348
UBA1	0	0.090	-0.310	0.251		-0.973	0.799	0.602
COX4I1	0	-0.180	0.210	-0.141			0.051	-0.199
UBE2G1	0	0.040	-0.350
NDUFB5	0	1.580	-0.160	-1.253			0.429	1.250
NDUFA9	0	0.390	-0.190	0.726			-0.609	0.138
UQCRC2	0	-1.200	1.760	1.190			0.712	0.578
NDUFB10	0	-0.540	0.240	0.655			-0.439	0.217
SDHC	0	0.700	-0.920				0.734
NDUFS6	0	-1.180	1.230				0.083	0.081
NDUFB9	0	1.320	-1.130				-0.198	-0.162
NDUFC2	0	0.170	-0.110				-1.212	-0.980
SLC25A31	0	0.660	-0.130				0.878	0.610
ATP5A1	0	-0.100	0.190	0.149	0.419	-0.743
UCHL1	0	-0.500	0.500				1.153	-0.238
UCHL1	0	-0.500	0.500	0.687
UQCRB	0	0.760	-0.590				0.932	0.013
NDUFS2	0	0.150	0.060	0.489	-0.323	-1.479
UBE2J2	0	0.210	-0.200
NDUFV3	0	0.760	-0.640
NDUFS4	0	0.190	-0.590				-0.148	-0.106
CASP3	0	0.570	-0.390
COX6C	0	-1.210	1.800				-0.502	0.239
NDUFB6	0	-1.020	1.120					-0.183
ATP5C1	0	0.380	-0.440	0.381	-0.025	-0.749	0.379	0.339
VDAC2	0	-0.270	0.880		1.276	-0.710
NDUFV1	0	-0.620	0.680				-0.032	0.387
ATP5H	0	0.790	-0.660				-0.180	-0.220
UQCRFS1	0	0.580	-0.380
UQCRFS1	0	0.580	-0.380		0.455	-1.390
CYCS	0	-0.020	-0.350				0.711	0.320
UQCRH	0
NDUFV2	0	1.600	-1.130				0.165	0.361
COX5A	0	0.630	-0.700				-0.118	0.366
CYC1	0	0.160	-0.180				0.985	0.521
NDUFB1	0	0.580	-0.030				-0.368
UQCR10	0	-0.360	0.450				0.768	0.390
UBE2L3	0	-0.730	0.630				1.031	0.887
UBE2L3	0	-0.730	0.630
LRRK2	0	0.530	-0.620	-0.240
NDUFA4	0	1.070	-0.860	0.219			0.286
UBE2J1	0						-1.180	-0.378
NDUFS3	0	0.810	-0.670	0.563	-0.004	-0.643	0.049	-0.093
ATP5O	0	0.140	-0.360	-0.208			0.202	0.472

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ATP5A1	Ubiquitylation	K161		-1.608	_VVDALGNAIDGK(gl)GPIGSK_
ATP5A1	Ubiquitylation	K175		-0.184	_VGLK(gl)APGIIPR_
ATP5A1	Ubiquitylation	K261		-0.997	_STVAQLVK(gl)R_
ATP5B	Ubiquitylation	K55		-1.344	_DYAAQTSPSPK(gl)AGAATGR_
ATP5B	Ubiquitylation	K426		-0.601	_GVQK(gl)ILQDYK_
ATP5B	Phosphorylation	S465		-1.223	_FLS(ph)QPFQVAEVFTGHMGK_
ATP5C1	Ubiquitylation	K29		-0.071	_NMATLK(gl)DITR_
ATP5O	Ubiquitylation	K84	-1.113	1.074	_VAASVLNPYVK(gl)R_
CASP3	Ubiquitylation	K11	-0.053	-0.687	_(ac)MENTENSVDSK(gl)SIK_
CASP3	Ubiquitylation	K14	-0.455	-0.687	_SIK(gl)NLEPK_
CASP3	Ubiquitylation	K57	-0.304	-1.817	_NFHK(gl)STGMTSR_
CASP3	Ubiquitylation	K82	-0.268	-0.605	_NLK(gl)YEVR_
COX6B1	Ubiquitylation	K13	-1.330	0.150	_NYK(gl)TAPFDSR_
COX6B1	Ubiquitylation	K47	-0.072		_AMTAK(gl)GGDISVCEWYQR_
CYC1	Ubiquitylation	K50		-1.489	_TPQAVALSSK(gl)SGLSR_
CYCS	Ubiquitylation	K40		-2.265	_K(gl)TGQAPGYSYTAANK(gl)NK_
CYCS	Ubiquitylation	K54	-0.872	-1.922	_K(gl)TGQAPGYSYTAANK(gl)NK_
CYCS	Ubiquitylation	K56	-0.872	-1.922	_TGQAPGYSYTAANKNK(gl)_
CYCS	Ubiquitylation	K101		-1.859	_ADLIAYLKK(gl)_
HTRA2	Ubiquitylation	K237	-1.868	-0.270	_IQTK(gl)EPLPTLPLGR_
NDUFA1	Ubiquitylation	K64	-2.721	-0.183	_YYVSK(gl)GLENID_
NDUFA8	Ubiquitylation	K65	0.281	1.896	_LVNK(gl)CALDFFR_
NDUFA8	Ubiquitylation	K106	-0.122		_KQQAK(gl)FDECVLDK_
NDUFB10	Ubiquitylation	K121		-0.555	_EGQNYQQNCIK(gl)EVEQFTQVAK_
NDUFB10	Ubiquitylation	K131		-0.444	_EVEQFTQVAK(gl)AYQDR_
NDUFB4	Ubiquitylation	K5		-1.281	_(ac)SFPK(gl)YKPSSLR_
NDUFB4	Ubiquitylation	K120		-0.825	_LIQEGK(gl)LDR_
NDUFB6	Ubiquitylation	K9	-2.576	-0.600	_TGYTPDEK(gl)LR_
NDUFB6	Ubiquitylation	K54	-1.501	-0.723	_FLENK(gl)SPWR_
NDUFB7	Ubiquitylation	K81	-1.497	-0.471	_DSFPNFLACK(gl)QER_
NDUFS1	Ubiquitylation	K298		-1.134	_FAYDGLK(gl)R_
NDUFS5	Ubiquitylation	K8		0.336	_PFLDIQK(gl)R_
NDUFS5	Ubiquitylation	K88	-0.635	1.381	_DKLIK(gl)EGK_
NDUFS8	Ubiquitylation	K88		-1.865	_EPATINYPFEK(gl)GPLSPR_
NDUFV3	Phosphorylation	S448		-0.878	_M(ox)PQPS(ph)SGRESPRH_
NDUFV3	Phosphorylation	S449	-0.292		_M(ox)PQPSS(ph)GRESPRH_
NDUFV3	Phosphorylation	S453	-0.918	-0.698	_M(ox)PQPSSGRES(ph)PRH_
PARK7	Ubiquitylation	K41	0.222	0.590	_VTVAGLAGK(gl)DPVQCSR_
PARK7	Ubiquitylation	K93	-0.291		_EILK(gl)EQENR_
PARK7	Ubiquitylation	K132	0.639		_VTTHPLAKDK(gl)_
PPID	Ubiquitylation	K285	0.088		_LQPIALSCVLNIGACKLK(gl)_
SDHA	Ubiquitylation	K341		-1.790	_YAPVAK(gl)DLASR_
SLC25A4	Ubiquitylation	K52		0.200	_QYK(gl)GIIDCVVR_
SLC25A4	Ubiquitylation	K88	-2.095		_IPK(gl)EQGVLSFWR_
SLC25A4	Ubiquitylation	K172	-0.787	0.875	_LAADVGK(gl)SGTER_
SLC25A5	Ubiquitylation	K74		0.478	_QITADK(gl)QYK_
SLC25A5	Ubiquitylation	K77		0.200	_QYK(gl)GIIDCVVR_
SLC25A5	Ubiquitylation	K88	-2.095		_IPK(gl)EQGVLSFWR_
SLC25A5	Ubiquitylation	K130	-0.918	1.293	_QIFLGGVDK(gl)R_
SLC25A5	Ubiquitylation	K172	-1.978	-0.228	_LAADVGK(gl)AGAER_
SLC25A5	Ubiquitylation	K188		0.764	_GLGDCLVK(gl)IYK_
SLC25A5	Ubiquitylation	K191		0.215	_IYK(gl)SDGIK_
SLC25A5	Ubiquitylation	K270	-2.134		_K(gl)GTDIMYTGTLDCWR_
SLC25A5	Ubiquitylation	K293	-1.774	0.323	_DEGGK(gl)AFFK_
SLC25A6	Ubiquitylation	K88	-2.095		_IPK(gl)EQGVLSFWR_
SLC25A6	Ubiquitylation	K172	-0.787	0.875	_LAADVGK(gl)SGTER_
UBA1	Phosphorylation	S46	0.482	0.545	_NGS(ph)EADIDEGLYSR_
UBA1	Ubiquitylation	K68	0.319		_QLYVLGHEAMK(gl)R_
UBA1	Ubiquitylation	K185	0.243	1.274	_GIK(gl)LVVADTR_
UBA1	Ubiquitylation	K296		0.188	_GGIVSQVK(gl)VPK_
UBA1	Ubiquitylation	K465	-0.360		_YDGQVAVFGSDLQEK(gl)LGK_
UBA1	Ubiquitylation	K528	-0.599	0.237	_LK(gl)SDTAAAAVR_
UBA1	Ubiquitylation	K593	-0.196	0.152	_K(gl)PLLESGTLGTK_
UBA1	Ubiquitylation	K671	-0.518	-0.212	_QPAENVNQYLTDPK(gl)FVER_
UBA1	Ubiquitylation	K746	-0.514		_QLLHNFPPDQLTSSGAPFWSGPK(gl)R_
UBA1	Ubiquitylation	K802	-1.053		_AAVATFLQSVQVPEFTPK(gl)SGVK_
UBA1	Phosphorylation	S835	-0.322	-0.079	_ATLPS(ph)PDKLPGFK_
UBA1	Ubiquitylation	K884	-0.047		_AENYDIPSADRHKSK(gl)_
UBB	Ubiquitylation	K6	1.066	0.995	_MQIFVK(gl)TLTGK_
UBB	Ubiquitylation	K11	-0.488	-0.081	_TLTGK(gl)TITLEVEPSDTIENVKAK(gl)_
UBB	Ubiquitylation	K27	-0.882	-0.159	_TLTGK(gl)TITLEVEPSDTIENVK(gl)AK_
UBB	Ubiquitylation	K29	-1.087	-1.029	_AK(gl)IQDK(gl)EGIPPDQQR_
UBB	Ubiquitylation	K33	-0.736	-0.407	_IQDK(gl)EGIPPDQQR_
UBB	Ubiquitylation	K48	-0.062	0.315	_LIFAGK(gl)QLEDGRTLSDYNIQK_
UBB	Phosphorylation	S57	1.909	0.548	_TLS(ph)DYNIQK_
UBB	Ubiquitylation	K63	0.276	0.299	_TLSDYNIQK(gl)ESTLHLVLR_
UBB	Ubiquitylation	K99	0.109	2.111	_VK(gl)LAVLK_
UBB	Ubiquitylation	K104	0.674	2.102	_LAVLK(gl)YYK_
UBB	Ubiquitylation	K107	2.949	3.611	_YYK(gl)VDENGK(gl)ISR_
UBB	Ubiquitylation	K113	1.572	3.672	_YYK(gl)VDENGK(gl)ISR_
UBB	Ubiquitylation	K152	4.747	4.970	_CCLTYCFNK(gl)PEDK_
UBB	Ubiquitylation	K156	4.809		_CCLTYCFNKPEDK(gl)_
UBE2G1	Ubiquitylation	K163	0.087		_K(gl)SQETAFE_
UBE2G2	Ubiquitylation	K7	-0.135	-1.265	_MAGTALK(gl)R_
UBE2G2	Ubiquitylation	K153	-0.284	0.230	_DDREQFYK(gl)IAK_
UBE2G2	Ubiquitylation	K156	-0.110	-0.573	_IAK(gl)QIVQK_
UBE2G2	Ubiquitylation	K161	-0.157	-1.390	_QIVQK(gl)SLGL_
UBE2J1	Ubiquitylation	K177	0.456		_SGSDSSQADQEAK(gl)ELAR_
UBE2J1	Phosphorylation	S266	0.243	0.208	_RLS(ph)TSPDVIQGHQPR_
UBE2J2	Ubiquitylation	K18	-0.473	0.051	_LK(gl)QDYLR_
UBE2J2	Ubiquitylation	K155		-0.195	_GPTLGSIETSDFTK(gl)R_
UBE2L3	Ubiquitylation	K9	1.366		_LMK(gl)ELEEIRK_
UBE2L3	Ubiquitylation	K20	1.131	0.956	_CGMK(gl)NFR_
UBE2L3	Ubiquitylation	K64	-1.229		_IEINFPAEYPFK(gl)PPK_
UBE2L3	Ubiquitylation	K73	0.293	0.015	_TK(gl)IYHPNIDEK_
UBE2L3	Ubiquitylation	K96	-0.965		_GQVCLPVISAENWK(gl)PATK_
UBE2L3	Ubiquitylation	K131	0.407	0.848	_ADLAEEYSK(gl)DR_
UBE2L3	Ubiquitylation	K138	0.523		_FCK(gl)NAEEFTK_
UBE2L3	Ubiquitylation	K146	0.357	0.853	_NAEEFTKK(gl)_
UBE2L3	Ubiquitylation	K150	0.275		_YGEK(gl)RPVD_
UBE2L3	Ubiquitylation	K235	0.591	0.087	_TVDTK(gl)QAQDLAR_
UBE2L3	Ubiquitylation	K254	-0.450	-0.156	_SYGIPFIETSAK(gl)TR_
UCHL1	Ubiquitylation	K4	-0.164	-0.657	_MQLK(gl)PMEINPEMLNK_
UCHL1	Ubiquitylation	K65	-0.004	-0.789	_K(gl)QIEELKGQEVSPK_
UCHL1	Ubiquitylation	K71	-0.121	-0.325	_QIEELK(gl)GQEVSPK_
UCHL1	Ubiquitylation	K78	-0.595		_QIEELKGQEVSPK(gl)VYFMK_
UCHL1	Ubiquitylation	K123	-0.013	-0.297	_QFLSETEK(gl)M(ox)SPEDR_
UCHL1	Ubiquitylation	K135	-0.048		_CFEK(gl)NEAIQAAHDAVAQEGQCR_
UCHL1	Ubiquitylation	K195	-0.285	-0.704	_MPFPVNHGASSEDTLLK(gl)DAAK_
UCHL1	Ubiquitylation	K221	-0.155	-0.216	_FSAVALCK(gl)AA_
UQCRC2	Ubiquitylation	K250		-0.825	_GGLGLSGAK(gl)ANYR_
UQCRC2	Ubiquitylation	K377		-1.458	_TIAQGNLSNTDVQAAKNK(gl)_
UQCRFS1	Ubiquitylation	K110		-0.915	_RLEVLDSTK(gl)SSR_
UQCRFS1	Ubiquitylation	K172		-0.698	_LSDIPEGK(gl)NMAFK_
UQCRH	Ubiquitylation	K42	-0.522	1.440	_EQCEQLEK(gl)CVK_
VDAC1	Ubiquitylation	K20	0.718	0.885	_DVFTK(gl)GYGFGLIK_
VDAC1	Ubiquitylation	K61		1.135	_VTGSLETK(gl)YR_
VDAC1	Phosphorylation	S102	0.928	0.928	_LTFDSS(ph)FSPNTGKK_
VDAC1	Phosphorylation	S104	0.569	0.615	_LTFDSSFS(ph)PNTGK_
VDAC1	Phosphorylation	T107		0.493	_LTFDSSFSPNT(ph)GKK_
VDAC1	Ubiquitylation	K109	0.352		_LTFDSSFSPNTGK(gl)K_
VDAC1	Ubiquitylation	K110	0.406	0.270	_LTFDSSFSPNTGKK(gl)_
VDAC1	Ubiquitylation	K274	0.839		_NVNAGGHK(gl)LGLGLEFQA_
VDAC2	Ubiquitylation	K31	0.529		_DIFNK(gl)GFGFGLVK_
VDAC2	Ubiquitylation	K74		-0.220	_VTGTLETKYK(gl)_
VDAC2	Phosphorylation	T112	0.429		_LTFDT(ph)TFSPNTGKK_
VDAC2	Phosphorylation	S115	0.635	0.506	_LTFDTTFS(ph)PNTGK_
VDAC2	Ubiquitylation	K120		-0.029	_LTFDTTFSPNTGK(gl)K_
VDAC2	Ubiquitylation	K121	0.266	0.090	_LTFDTTFSPNTGKK(gl)_
VDAC2	Ubiquitylation	K285	0.885		_SINAGGHK(gl)VGLALELEA_
VDAC3	Phosphorylation	T4	0.413	0.325	_(ac)CNT(ph)PTYCDLGK_
VDAC3	Ubiquitylation	K12	0.157	-0.300	_(ac)CNTPTYCDLGK(gl)AAK_
VDAC3	Ubiquitylation	K15	0.803	0.453	_AAK(gl)DVFNK_
VDAC3	Ubiquitylation	K20	0.898	1.073	_DVFNK(gl)GYGFGMVK_
VDAC3	Ubiquitylation	K109	0.067	0.167	_LTLDTIFVPNTGK(gl)K_
VDAC3	Ubiquitylation	K110	-0.037	0.167	_LTLDTIFVPNTGK(gl)K_
VDAC3	Ubiquitylation	K163	0.282	0.417	_SK(gl)LSQNNFALGYK_
VDAC3	Ubiquitylation	K274	1.060		_NFSAGGHK(gl)VGLGFELEA_