RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
PDIA3	2	-2.160	3.830	0.411	2.714	-0.864	0.952	0.794
PDIA3	2	-2.160	3.830	0.189	2.142	-1.800
P4HB	2	-1.530	2.950	0.990	0.813	0.711	0.548	0.459
EEF1G	2	-1.850	3.470
ERP44	1	-2.430	5.120	-0.191	0.759	-0.035	-0.190	0.119
DNAJC10	1	-1.750	3.210	0.769	-0.495	-0.158	0.513	0.706
ERP29	1	-0.340	0.850				0.012	0.270
TXNL1	1	2.300	-1.010	-0.185
MAGT1	1	-0.410	0.630				1.646	0.552
MAGT1	1	-0.410	0.630
PDCL3	1	0.440	-0.800
PDCL3	1	1.370	-0.980
PRDX1	1	-0.560	-0.170	-0.180	-0.021	-0.352	0.472	-0.616
PRDX4	1	2.180	-0.730	-0.124	0.235	0.449	0.389	0.252
TXNL4A	1	-1.870	3.440
PDIA4	1	-0.040	-0.150	0.422			0.500	0.333
DYNC1H1	1	-0.620	0.440	0.066			0.428	0.323
MRPL53	1	3.330	-1.110		0.100	0.062	0.019
TMX2	1	-0.200	0.310				0.350	-0.097
TMX2	1	-0.200	0.310
MRPL43	0	1.510	-1.130		0.685	0.325	0.382	0.578
PDIA5	0	-1.000	1.120				0.907	0.753
GSTP1	0	-1.460	2.360				0.731	-2.952
TXNDC16	0	0.240	0.200
TUSC3	0	0.700	-0.570
GLRX3	0	-0.410	0.920	-0.282			-0.296	-0.076
TXNDC15	0	1.600	-1.150				-0.208	-1.103
TXNDC9	0	-0.410	0.230	-1.196
TXNDC9	0	0.730	-0.230	-1.196
PRDX6	0	0.680	-0.490	0.508	0.694	-1.150	0.703	0.179
TXNDC12	0	0.530	-0.510				-0.710
FAM213A	0	-0.410	0.290				0.683	0.627
EEF1E1	0	0.700	-0.120	0.177			0.427	0.615
TMX4	0	-1.220	1.260				0.665	0.524
PRDX5	0	0.930	-0.480		-1.143			1.450
MTX2	0	-0.150	0.000
MTX2	0	-0.150	0.000	-0.266			0.630	0.503
TXNDC17	0	-0.080	0.410	-1.104			0.142
SCO2	0	1.270	-0.340		-0.179	0.206	-0.289	-0.057
MRPS25	0	0.230	0.060	1.097	0.003	0.277	0.050	0.467
SCO1	0	0.020	0.360				0.240	-0.904
GSTM3	0	-0.400	0.800
TXN	0	1.900	-1.090		1.120		0.196	-5.026
PDCL	0	0.050	-0.850
TMX1	0			-0.010	0.926	-1.118	0.145	0.027
SH3BGRL3	0	0.130	-0.850					-2.278
PDIA6	0	1.060	-0.820	0.663	1.438	-1.234	0.073	0.167
UBXN4	0	-0.570	0.680				-0.667	0.090
PTGES2	0	1.440	-0.360
PTGES2	0	1.440	-0.360	0.198			-0.717	-0.743
GSTO1	0	0.140	-0.070				0.418	1.079
GSTO1	0	0.140	-0.070	-0.859
FAM213B	0	0.610	-1.300
PRDX3	0	-0.130	1.040	0.740	0.459	-0.867	1.026	0.703
TMX3	0	0.510	-0.580	0.275			0.639	0.653
MARS	0	0.810	-1.040	-0.620	0.302	-0.071	0.469	0.367
PRDX2	0	0.830	-0.090		0.376	-0.202	0.113	0.594
CLIC4	0			-0.105
NDUFV2	0	1.600	-1.130				0.165	0.361
GLRX5	0	-1.070	0.840			0.368
GSTK1	0	0.050	-0.370	-0.002			0.473	0.634
TXNRD1	0	-0.400	-0.200
TXNDC5	0	-0.390	0.840	0.683	1.407	0.087	0.669	0.412
RNF103	0	0.500	-0.190
EEF1E1-BLO	0			0.177			0.427	0.615

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
CLIC4	Ubiquitylation	K106	-0.220	0.166	_YLK(gl)LSPK_
CLIC4	Ubiquitylation	K146	-0.028	0.596	_GLLK(gl)TLQK_
CLIC4	Ubiquitylation	K199	0.892	0.090	_LHIVK(gl)VVAK_
CLIC4	Ubiquitylation	K249	-0.463		_DEFTNTCPSDKEVEIAYSDVAK(gl)R_
DNAJC10	Ubiquitylation	K737	0.024	0.405	_VDCQAYAQTCQK(gl)AGIR_
DYNC1H1	Ubiquitylation	K120		1.681	_SNSLAFIK(gl)R_
DYNC1H1	Ubiquitylation	K634	-1.630		_VQYPQSQACK(gl)MSHVR_
DYNC1H1	Ubiquitylation	K652	-1.130		_DLPPVSGSIIWAK(gl)QIDR_
DYNC1H1	Ubiquitylation	K683		2.176	_LK(gl)QDGDSFR_
DYNC1H1	Ubiquitylation	K734	-1.416	1.572	_TGNVLK(gl)LK_
DYNC1H1	Ubiquitylation	K1099		1.697	_GTFDNAETK(gl)K_
DYNC1H1	Ubiquitylation	K1100		1.697	_GTFDNAETK(gl)K_
DYNC1H1	Ubiquitylation	K1115		0.283	_VQSK(gl)VNLK_
DYNC1H1	Ubiquitylation	K1917		0.777	_TESVK(gl)ALGHQLGR_
DYNC1H1	Ubiquitylation	K2043		1.456	_SLAMTK(gl)PDR_
DYNC1H1	Ubiquitylation	K2104		1.446	_SVLVSAGNVK(gl)R_
DYNC1H1	Ubiquitylation	K2239		0.473	_VLLK(gl)ALER_
DYNC1H1	Ubiquitylation	K2702		0.744	_TSDQTWVK(gl)LER_
DYNC1H1	Ubiquitylation	K3471		0.638	_ADLAAVEAK(gl)VNR_
DYNC1H1	Ubiquitylation	K3581	0.233	0.270	_WQASSLPADDLCTENAIMLK(gl)R_
DYNC1H1	Ubiquitylation	K3621	0.586	0.363	_K(gl)NLESALR_
DYNC1H1	Ubiquitylation	K3757	-0.959	0.797	_SLLQALNEVK(gl)GR_
DYNC1H1	Ubiquitylation	K4089	0.723		_AINTAVK(gl)SGR_
DYNC1H1	Ubiquitylation	K4204		2.901	_YAPLGWSKK(gl)_
DYNC1H1	Phosphorylation	T4366	0.372		_T(ph)DSTSDGRPAWMR_
DYNC1H1	Phosphorylation	S4368	0.495	0.826	_TDS(ph)TSDGRPAWMR_
EEF1E1	Ubiquitylation	K18	0.406		_SLGLSK(gl)GNK_
EEF1E1	Ubiquitylation	K21		-0.200	_SLGLSKGNK(gl)_
EEF1E1-BLOC1S5	Ubiquitylation	K18	0.406		_SLGLSK(gl)GNK_
EEF1E1-BLOC1S5	Ubiquitylation	K21		-0.200	_SLGLSKGNK(gl)_
EEF1G	Ubiquitylation	K67		0.885	_AFK(gl)ALIAAQYSGAQVR_
EEF1G	Ubiquitylation	K258	0.599	0.634	_AVLGEVK(gl)LCEK_
EEF1G	Ubiquitylation	K262	0.320	1.041	_LCEK(gl)MAQFDAKK_
EEF1G	Ubiquitylation	K270	-0.557	0.096	_K(gl)FAETQPK_
EEF1G	Ubiquitylation	K277	-0.220	0.774	_FAETQPK(gl)KDTPR_
EEF1G	Ubiquitylation	K484		-0.237	_AFNQGK(gl)IFK_
EEF1G	Ubiquitylation	K487	-0.407		_AFNQGKIFK(gl)_
ERP29	Ubiquitylation	K182	0.923	1.532	_QALLK(gl)QGQDNLSSVK_
FAM213A	Ubiquitylation	K67	0.826		_AK(gl)ELWEK_
FAM213A	Ubiquitylation	K139	0.664		_GEIFLDEKKK(gl)_
FAM213A	Ubiquitylation	K229	-0.031		_MIKPQTLASEKK(gl)_
FAM213B	Ubiquitylation	K101	0.342		_QLYK(gl)ELGFK_
GLRX3	Ubiquitylation	K111	-0.624		_LDGAHAPELTKK(gl)_
GLRX3	Ubiquitylation	K240	0.260	0.349	_LK(gl)VLTNK_
GSTM3	Ubiquitylation	K79	-0.485		_NK(gl)ITQSNAILR_
GSTO1	Ubiquitylation	K11	-2.209	-1.715	_SLGK(gl)GSAPPGPVPEGSIR_
GSTO1	Ubiquitylation	K66	-0.290		_NKPEWFFKK(gl)_
GSTO1	Ubiquitylation	K188	-0.206		_LEAMK(gl)LNECVDHTPK_
MAGT1	Ubiquitylation	K72		-0.120	_MNGDK(gl)FR_
MAGT1	Ubiquitylation	K82		0.038	_VSQLM(ox)EWTNK(gl)RPVIR_
MARS	Ubiquitylation	K109		1.248	_K(gl)GEDVLGSVR_
MARS	Ubiquitylation	K375	1.017		_ITQDIFQQLLK(gl)R_
MARS	Phosphorylation	T824	-0.049	0.199	_T(ph)SPKPAVVETVTTAKPQQIQALMDEVTK_
MARS	Phosphorylation	S825	-0.049	0.219	_TS(ph)PKPAVVETVTTAK_
MRPL53	Ubiquitylation	K41	-1.499		_TFLQTVSSEK(gl)VR_
MTX2	Ubiquitylation	K177		-0.406	_AIGWGKK(gl)_
P4HB	Ubiquitylation	K65	-1.515	-0.862	_ALAPEYAK(gl)AAGK_
P4HB	Ubiquitylation	K69		-0.948	_ALAPEYAKAAGK(gl)_
P4HB	Ubiquitylation	K81	-0.179	2.873	_LAK(gl)VDATEESDLAQQYGVR_
P4HB	Ubiquitylation	K103		1.407	_GYPTIK(gl)FFR_
P4HB	Ubiquitylation	K385	-0.726	0.916	_NFEDVAFDEK(gl)K_
P4HB	Ubiquitylation	K386	-0.726	0.916	_NFEDVAFDEK(gl)K_
PDCL	Ubiquitylation	K118	-0.750		_ISGK(gl)MTLK_
PDCL3	Ubiquitylation	K83	0.281	1.834	_LAEWK(gl)ATK_
PDIA3	Ubiquitylation	K75		-0.105	_LK(gl)GIVPLAK_
PDIA3	Ubiquitylation	K94	-0.012	0.658	_VDCTANTNTCNK(gl)YGVSGYPTLK_
PDIA3	Ubiquitylation	K130		0.775	_TADGIVSHLKK(gl)_
PDIA3	Ubiquitylation	K226	-0.163	0.525	_TVAYTEQK(gl)MTSGK_
PDIA3	Ubiquitylation	K362	-0.242		_FLQDYFDGNLK(gl)R_
PDIA4	Ubiquitylation	K141		2.398	_FDVSGYPTIK(gl)ILK_
PDIA4	Ubiquitylation	K163		0.009	_TQEEIVAK(gl)VR_
PDIA4	Ubiquitylation	K245	0.936	1.890	_VDATAETDLAK(gl)R_
PDIA6	Ubiquitylation	K289		0.793	_GFPTIK(gl)IFQK_
PDIA6	Phosphorylation	S476	-0.194	0.149	_EPWDGRDGELPVEDDIDLS(ph)DVELDDLGKDEL_
PRDX1	Ubiquitylation	K7	-0.359	0.522	_(ac)SSGNAK(gl)IGHPAPNFK_
PRDX1	Ubiquitylation	K27	-0.787		_ATAVMPDGQFK(gl)DISLSDYK_
PRDX1	Ubiquitylation	K35		1.615	_DISLSDYK(gl)GK_
PRDX1	Ubiquitylation	K37	-0.265	0.557	_DISLSDYKGK(gl)_
PRDX1	Ubiquitylation	K109	-1.440		_KQGGLGPMNIPLVSDPK(gl)R_
PRDX1	Ubiquitylation	K120	0.734	0.950	_TIAQDYGVLK(gl)ADEGISFR_
PRDX1	Ubiquitylation	K136	0.736	0.002	_GLFIIDDK(gl)GILR_
PRDX1	Ubiquitylation	K178	-0.223		_HGEVCPAGWK(gl)PGSDTIKPDVQK_
PRDX1	Ubiquitylation	K192	0.526	0.198	_SK(gl)EYFSK_
PRDX1	Ubiquitylation	K197	1.482	0.519	_EYFSK(gl)QK_
PRDX2	Ubiquitylation	K10	-0.538	-0.305	_IGK(gl)PAPDFK_
PRDX2	Ubiquitylation	K29	-1.244	0.469	_ATAVVDGAFKEVK(gl)_
PRDX2	Ubiquitylation	K119	0.547		_LSEDYGVLK(gl)TDEGIAYR_
PRDX4	Ubiquitylation	K265	-0.267	0.111	_LK(gl)YFDKLN_
PRDX6	Phosphorylation	T44	0.123	0.216	_DFT(ph)PVCTTELGR_
PRDX6	Ubiquitylation	K63		0.157	_LAPEFAK(gl)R_
PRDX6	Ubiquitylation	K209	-0.199	0.307	_GVFTK(gl)ELPSGK_
PTGES2	Ubiquitylation	K141	-0.517	0.132	_RAEIK(gl)FSSYR_
RNF103	Ubiquitylation	K65		-1.326	_GLGYSGLPEK(gl)K_
RNF103	Ubiquitylation	K66		-1.326	_GLGYSGLPEK(gl)K_
RNF103	Ubiquitylation	K184		-1.838	_STLIMSVPQTSTSK(gl)GK_
RNF103	Ubiquitylation	K186		-1.838	_STLIMSVPQTSTSK(gl)GK_
SCO2	Ubiquitylation	K196	-0.539	0.337	_LLGLTGSTK(gl)QVAQASHSYR_
SH3BGRL3	Ubiquitylation	K182	0.093	0.157	_EIK(gl)SQQSEVTR_
TMX1	Ubiquitylation	K223	-0.915		_K(gl)LLSESAQPLKK_
TMX1	Ubiquitylation	K233	-0.752	0.034	_LLSESAQPLK(gl)K_
TMX1	Ubiquitylation	K234		0.013	_LLSESAQPLK(gl)K_
TMX1	Phosphorylation	S247	0.548	0.425	_VEEEQEADEEDVS(ph)EEEAESK_
TMX1	Phosphorylation	S270	0.589	0.579	_S(ph)LGPSLATDKS_
TMX1	Phosphorylation	S274		0.561	_SLGPS(ph)LATDKS_
TMX1	Ubiquitylation	K279	-0.052	0.536	_SLGPSLATDK(gl)S_
TMX2	Ubiquitylation	K144		0.407	_YFNDK(gl)TIDEELER_
TMX2	Ubiquitylation	K193		0.413	_YNCTGLNFGK(gl)VDVGR_
TMX2	Phosphorylation	S288	1.956	0.713	_AGDNIPEEQPVASTPTTVS(ph)DGENKK_
TMX3	Ubiquitylation	K103		-0.043	_GYPTIK(gl)LLK_
TMX3	Ubiquitylation	K267		0.649	_LK(gl)SIIQEVAR_
TUSC3	Ubiquitylation	K72		-0.120	_MNGDK(gl)FR_
TUSC3	Ubiquitylation	K78		-0.759	_FIK(gl)APPR_
TXN	Ubiquitylation	K94	0.520		_VGEFSGANK(gl)EK_
TXNDC16	Ubiquitylation	K86		-0.836	_VNCVK(gl)EEISR_
TXNDC17	Ubiquitylation	K40	-1.175		_DAGGK(gl)SWCPDCVQAEPVVR_
TXNDC17	Ubiquitylation	K89	0.441	-0.362	_NLK(gl)VTAVPTLLK_
TXNDC17	Ubiquitylation	K98	-0.250	-0.377	_VTAVPTLLK(gl)YGTPQK_
TXNL1	Ubiquitylation	K28		0.184	_LAVVK(gl)FTMR_
TXNL1	Ubiquitylation	K102	-1.349	0.032	_IDQYQGADAVGLEEK(gl)IK_
TXNL1	Ubiquitylation	K104	-1.725	-1.269	_IK(gl)QHLENDPGSNEDTDIPK_
TXNL1	Ubiquitylation	K181	-0.170	-0.319	_LYSMK(gl)FQGPDNGQGPK_
TXNL4A	Ubiquitylation	K139	0.359	-0.277	_DYSTK(gl)YRY_
TXNRD1	Ubiquitylation	K580	-0.043	-0.178	_IICNTK(gl)DNER_
UBXN4	Phosphorylation	S165		0.680	_S(ph)DTATGGESAGHATSSQEPSGCSDQRPAEDLNIR_
UBXN4	Phosphorylation	S180	0.266	1.386	_SDTATGGESAGHATSS(ph)QEPSGCSDQRPAEDLNIR_
UBXN4	Ubiquitylation	K239	0.224	0.560	_EMLDYK(gl)R_
UBXN4	Ubiquitylation	K269	-0.133		_IK(gl)QQIALDR_
UBXN4	Ubiquitylation	K285	-0.261		_FAK(gl)TKEEVEAAK_
UBXN4	Ubiquitylation	K301	-0.637	0.078	_AAALLAK(gl)QAEMEVK_
UBXN4	Ubiquitylation	K308	0.353	0.867	_QAEMEVK(gl)R_
UBXN4	Ubiquitylation	K459		-0.833	_VTSSEPPNPASSSK(gl)SEK_
UBXN4	Ubiquitylation	K462	-1.294	-0.833	_VTSSEPPNPASSSKSEK(gl)_