RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
MORC3	2	-0.280	-0.100	0.309			0.499	0.162
CHEK2	2	0.530	0.100
USP13	1	0.350	0.240	-1.142				0.643
USP13	1	0.350	0.240
USP5	1	0.450	-0.520	-1.142				0.643
SMO	1	-0.690	1.110		1.532
PML	1	-0.420	0.350		-0.244	0.322
BAG3	1	0.180	-0.820
TBRG1	1	-1.260	2.590
NCKAP1	0	1.120	-0.620	0.347	0.023	-0.306	1.181	0.448
TCF3	0	0.270	-0.020
HPS4	0	0.980	-0.680
DNAJA3	0	-0.010	-0.240	0.786	0.226	-0.161	-0.800	-0.347
GTPBP4	0	-1.150	1.590		-0.623	-0.725
GTPBP4	0	-1.150	1.590				-0.486	0.142
WFS1	0	-0.390	0.420				-0.793	-0.234
GAPDH	0	0.130	0.380	0.283	0.870	0.760	-0.040	-0.473
AAK1	0	1.900	-1.150
AAK1	0	1.900	-1.150				0.289	-0.421
PARK7	0	-0.660	0.930
STX12	0	0.070	0.130				-0.053	0.028
APOA1	0	0.850	-0.420				-3.959
CREB1	0	1.080	-0.800			-1.027
SOX4	0	1.610	-0.930
NAPG	0	-0.240	0.190
DSG1	0	1.050	-0.690					-4.325
DSC3	0	1.100	-0.870				-4.398	-2.576
COG3	0	1.060	-1.010
STXBP1	0	-0.320	0.260				0.349	0.605
HSPD1	0	1.020	-0.650	1.151	0.719	-0.757
ANK2	0	0.370	-0.920
CDKN2A	0	-0.080	-0.260	-0.556		-1.080	-3.270	-1.110
GNAQ	0	0.140	-0.310				0.052	0.449
PPAP2B	0	-0.750	0.840
PEX19	0	1.640	-1.220				-3.891	-2.630
MSX1	0	0.420	-0.450
PRKCD	0	0.250	0.070				0.578	0.427
TSC1	0	1.100	-0.150
SMAD3	0	-1.560	1.800
SMAD3	0	0.270	-0.340
CALR	0	-1.300	2.220				0.480	0.054
CHP1	0	0.130	0.190				-0.105	0.192

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AAK1	Phosphorylation	T605		-0.689	_VQT(ph)TPPPAVQGQK_
AAK1	Phosphorylation	T606	-0.648	-1.206	_VQTT(ph)PPPAVQGQK_
AAK1	Phosphorylation	T620	-0.540	-0.524	_VGSLT(ph)PPSS(ph)PK_
AAK1	Phosphorylation	S623	-0.540	-0.550	_VGSLT(ph)PPS(ph)SPK_
AAK1	Phosphorylation	S624	-0.737	-0.516	_VGSLT(ph)PPSS(ph)PK_
AAK1	Phosphorylation	S652	0.769	1.397	_S(ph)TQLLQAAAAEASLNK_
AAK1	Phosphorylation	T653	0.769	1.397	_S(ph)TQLLQAAAAEASLNK_
AAK1	Phosphorylation	S947	-0.044	0.120	_S(ph)ESNEDLFGLVPFDEITGSQQQK_
AAK1	Phosphorylation	S949	0.168	-0.189	_SES(ph)NEDLFGLVPFDEITGSQQQK_
AAK1	Phosphorylation	T1014	-0.576	0.108	_TLKPTYRT(ph)PER_
ANK2	Phosphorylation	S1459	0.673	0.675	_ES(ph)ESDQEQEEEIDM(ox)TSEK_
ANK2	Phosphorylation	S1461	0.678	0.687	_ESES(ph)DQEQEEEIDMTSEK_
ANK2	Phosphorylation	S3793	0.342	0.385	_AMIVPSS(ph)PSK_
ANK2	Phosphorylation	S3823	-0.465	-0.203	_GGS(ph)PIIQEPEEPSEHREESSPR_
ANK2	Phosphorylation	T3844		0.389	_T(ph)SLVIVESADNQPETCER_
ANK2	Phosphorylation	S3845	0.659	0.389	_KTS(ph)LVIVESADNQPETCER_
BAG3	Phosphorylation	S173	-0.549	-0.580	_SQS(ph)PAASDCSSSSSSASLPSSGR_
BAG3	Phosphorylation	S194	-0.402	-0.523	_S(ph)SLGSHQLPR_
BAG3	Phosphorylation	S195	0.244	-0.933	_SS(ph)LGSHQLPR_
BAG3	Phosphorylation	S289	4.691	-1.292	_SSTPLHS(ph)PSPIR_
BAG3	Phosphorylation	S291	0.973	-1.061	_SSTPLHSPS(ph)PIR_
BAG3	Phosphorylation	S377	-2.611	-2.836	_VPPAPVPCPPPS(ph)PGPSAVPSSPK_
BAG3	Phosphorylation	S381		-1.826	_VPPAPVPCPPPSPGPS(ph)AVPS(ph)SPK_
BAG3	Phosphorylation	S385	-3.389	-1.522	_VPPAPVPCPPPS(ph)PGPSAVPS(ph)SPK_
BAG3	Phosphorylation	S386	-3.389	-3.269	_VPPAPVPCPPPS(ph)PGPSAVPSS(ph)PK_
CALR	Ubiquitylation	K48		0.703	_SDFGK(gl)FVLSSGK_
CALR	Ubiquitylation	K153	-0.924	0.619	_GK(gl)NVLINK_
CALR	Ubiquitylation	K159	-1.004	0.381	_NVLINK(gl)DIR_
CHEK2	Phosphorylation	S260	3.670	3.632	_KFAIGS(ph)AR_
CHEK2	Ubiquitylation	K437		-0.826	_TQVSLK(gl)DQITSGK_
COG3	Phosphorylation	S663		0.575	_LNS(ph)NNALIEFLLEGTPEIR_
CREB1	Phosphorylation	S271	-0.979	-1.450	_TAPTSTIAPGVVM(ox)ASS(ph)PALPTQPAEEAAR_
CREB1	Ubiquitylation	K333	1.343		_ALK(gl)DLYCHK_
GAPDH	Ubiquitylation	K61	0.521	0.820	_FHGTVK(gl)AENGK_
GAPDH	Ubiquitylation	K66	-0.023		_FHGTVKAENGK(gl)_
GAPDH	Ubiquitylation	K86	0.473		_IK(gl)WGDAGAEYVVESTGVFTTMEK_
GAPDH	Ubiquitylation	K117	1.371		_AGAHLQGGAK(gl)R_
GAPDH	Ubiquitylation	K145	0.536	0.707	_YDNSLK(gl)IISNASCTTNCLAPLAK_
GAPDH	Ubiquitylation	K194	0.139	0.426	_TVDGPSGK(gl)LWR_
GAPDH	Ubiquitylation	K215	0.068	0.425	_GALQNIIPASTGAAK(gl)AVGK_
GAPDH	Ubiquitylation	K219		0.588	_GALQNIIPASTGAAKAVGK(gl)_
GAPDH	Ubiquitylation	K254	-0.005		_LEKPAK(gl)YDDIKK_
GAPDH	Ubiquitylation	K259	-0.052	0.054	_LEKPAKYDDIK(gl)K_
GAPDH	Ubiquitylation	K260	0.061	-0.269	_LEKPAKYDDIKK(gl)_
GAPDH	Ubiquitylation	K263	-0.140	0.790	_VVK(gl)QASEGPLK_
GNAQ	Ubiquitylation	K16	0.245		_TLESIMACCLSEEAK(gl)EAR_
GNAQ	Ubiquitylation	K102	-0.299		_IPYK(gl)YEHNK_
GTPBP4	Ubiquitylation	K187		0.585	_SSFINK(gl)VTR_
HPS4	Phosphorylation	S272		0.478	_SLAS(ph)PAGLQDGSAQHHPK_
HSPD1	Phosphorylation	S70	0.210	0.487	_TVIIEQSWGS(ph)PK_
HSPD1	Ubiquitylation	K82	-0.300		_DGVTVAK(gl)SIDLK_
HSPD1	Ubiquitylation	K87	-0.005	0.292	_SIDLK(gl)DKYK_
HSPD1	Ubiquitylation	K130		-0.428	_EGFEK(gl)ISK_
HSPD1	Ubiquitylation	K233	0.853	0.024	_GYISPYFINTSK(gl)GQK_
HSPD1	Ubiquitylation	K292	0.339		_LK(gl)VGLQVVAVK_
MORC3	Phosphorylation	S514		0.420	_HLS(ph)EGTNSYATR_
MORC3	Ubiquitylation	K555	-1.251		_SSILNAK(gl)NRR_
MORC3	Phosphorylation	S560	2.304	1.301	_RLS(ph)SQFENSVYK_
MORC3	Ubiquitylation	K785	0.929		_K(gl)QCSALQHVK_
MORC3	Ubiquitylation	K825	0.523	0.398	_QLDK(gl)CSIERDQYK_
MORC3	Ubiquitylation	K844	0.024		_SEVELLEMEK(gl)SQIR_
MORC3	Ubiquitylation	K855		1.663	_SQCEELK(gl)TEVEQLK_
MORC3	Ubiquitylation	K891	0.406		_STNQQTATDVSTSSNIEESVNHMDGESLK(gl)LR_
MSX1	Phosphorylation	S154		0.148	_RLS(ph)PPACTLR_
NAPG	Ubiquitylation	K55	0.270		_QFEQAK(gl)DACLR_
NAPG	Phosphorylation	S284	-0.418	-0.976	_KS(ph)PATPQAKPDGVTATAADEEEDEYSGGLC_
NAPG	Phosphorylation	T287	-0.418	-1.005	_KSPAT(ph)PQAKPDGVTATAADEEEDEYSGGLC_
NCKAP1	Ubiquitylation	K12	-1.114	-0.228	_SVLQPSQQK(gl)LAEK_
NCKAP1	Ubiquitylation	K16	0.326		_LAEK(gl)LTILNDR_
NCKAP1	Ubiquitylation	K190		-0.009	_LGQMIVDYENPLK(gl)K_
NCKAP1	Ubiquitylation	K191		-0.009	_LGQMIVDYENPLK(gl)K_
NCKAP1	Ubiquitylation	K1075		-0.817	_IGQETDK(gl)TTTR_
PARK7	Ubiquitylation	K41	0.222	0.590	_VTVAGLAGK(gl)DPVQCSR_
PARK7	Ubiquitylation	K93	-0.291		_EILK(gl)EQENR_
PARK7	Ubiquitylation	K132	0.639		_VTTHPLAKDK(gl)_
PEX19	Phosphorylation	S35		-1.246	_AKPS(ph)PAPPSTTTAPDASGPQK_
PEX19	Ubiquitylation	K52	-2.504	-2.347	_AKPSPAPPSTTTAPDASGPQK(gl)R_
PEX19	Ubiquitylation	K60	-0.279	0.300	_SPGDTAK(gl)DALFASQEK_
PEX19	Phosphorylation	S147	-0.230	0.253	_NATDLQNSS(ph)MSEEELTK_
PML	Ubiquitylation	K394	0.515	0.360	_LQDLSSCITQGK(gl)DAAVSKK_
PML	Phosphorylation	S403		3.141	_KAS(ph)PEAASTPRDPIDVDLPEEAER_
PML	Ubiquitylation	K476	-0.403	-0.735	_GPSYGEDVSNTTTAQK(gl)R_
PML	Phosphorylation	S504	-0.198	-0.109	_S(ph)SPEQPRPSTSK_
PML	Phosphorylation	S505	-0.198	-0.109	_S(ph)SPEQPRPSTSK_
PML	Phosphorylation	S518	-1.632	-1.605	_AVS(ph)PPHLDGPPS(ph)PR_
PML	Phosphorylation	S527	-1.392	-1.605	_AVS(ph)PPHLDGPPS(ph)PR_
PML	Phosphorylation	S530	0.466	0.093	_S(ph)PVIGSEVFLPNSNHVASGAGEAEER_
PML	Ubiquitylation	K623		-0.784	_IDNETQK(gl)ISQLAAVNR_
PPAP2B	Ubiquitylation	K5	0.619	0.462	_(ac)MQNYK(gl)YDK_
PPAP2B	Ubiquitylation	K8	0.265	0.647	_YDK(gl)AIVPESK_
PPAP2B	Ubiquitylation	K15	-0.741	-0.668	_AIVPESK(gl)NGGSPALNNNPR_
PRKCD	Ubiquitylation	K138	-0.141		_SEDEAK(gl)FPTMNR_
PRKCD	Ubiquitylation	K222	0.185	0.658	_DTIFQK(gl)ER_
PRKCD	Phosphorylation	S302	-0.240	-0.222	_S(ph)DSASSEPVGIYQGFEK_
PRKCD	Phosphorylation	S304	0.378	0.289	_RSDS(ph)ASSEPVGIYQGFEK_
PRKCD	Phosphorylation	S506	-0.213	0.200	_AS(ph)TFCGTPDYIAPEILQGLK_
PRKCD	Phosphorylation	T507	-0.149	0.240	_AS(ph)TFCGTPDYIAPEILQGLK_
PRKCD	Ubiquitylation	K641	-2.000		_DYSNFDQEFLNEK(gl)AR_
PRKCD	Phosphorylation	S645	0.577	0.832	_ARLS(ph)YSDK_
PRKCD	Phosphorylation	S647	0.886	0.853	_ARLSYS(ph)DK_
SMAD3	Ubiquitylation	K13	-0.704		_(ac)SSILPFTPPIVK(gl)R_
SOX4	Phosphorylation	S354		-0.003	_SSAASSPAAGRS(ph)PADHR_
STX12	Ubiquitylation	K53	0.374	1.032	_NLMSQLGTK(gl)QDSSK_
STX12	Ubiquitylation	K58	-0.103	0.738	_QDSSK(gl)LQENLQQLQHSTNQLAK_
STX12	Ubiquitylation	K127	0.260		_VSEK(gl)EKESIAR_
STX12	Ubiquitylation	K129	-0.233		_VSEKEK(gl)ESIAR_
STX12	Phosphorylation	S142	0.838	0.911	_AGSRLS(ph)AEER_
STXBP1	Ubiquitylation	K184	-0.088		_LAEQIATLCATLK(gl)EYPAVR_
STXBP1	Ubiquitylation	K314	1.042		_SLKDFSSSK(gl)R_
STXBP1	Ubiquitylation	K321	1.198	0.167	_MNTGEK(gl)TTMR_
STXBP1	Ubiquitylation	K332	0.879		_DLSQMLK(gl)K_
STXBP1	Ubiquitylation	K333		0.650	_DLSQMLKK(gl)_
TBRG1	Phosphorylation	S10	0.221	-0.264	_(ac)SLLDGLASS(ph)PR_
TCF3	Phosphorylation	S328	0.865	0.756	_AGAPGALS(ph)PSYDGGLHGLQSK_
TSC1	Phosphorylation	S505	0.141	0.350	_GGFDS(ph)PFYR_
USP13	Ubiquitylation	K163	0.116	1.146	_K(gl)QEVQAWDGEVR_
USP13	Ubiquitylation	K184	-0.042	-0.044	_HAFSLK(gl)QLDNPAR_
USP13	Ubiquitylation	K328	0.320	0.109	_LK(gl)PMYGPGYTGLK_
USP13	Ubiquitylation	K353	1.225		_K(gl)YVDKLEK_
USP13	Ubiquitylation	K357	0.847		_YVDK(gl)LEK_
USP13	Ubiquitylation	K418	0.291	0.339	_MFK(gl)ALIGK_
USP13	Ubiquitylation	K423	0.440	-0.090	_ALIGK(gl)GHPEFSTNR_
USP13	Ubiquitylation	K430	0.505	0.308	_MFK(gl)AFVSK_
USP13	Ubiquitylation	K435	-0.932	-0.715	_AFVSK(gl)SHPEFSSNR_
USP13	Ubiquitylation	K468	0.433		_FLVEEK(gl)IK_
USP13	Ubiquitylation	K470	-0.606	0.287	_IK(gl)CLATEK_
USP13	Ubiquitylation	K478	0.243	0.990	_CLATEKVK(gl)_
USP13	Ubiquitylation	K558	0.626	0.552	_SVAVK(gl)TTR_
USP13	Phosphorylation	T623	1.685	0.623	_GTGLQPGEEELPDIAPPLVT(ph)PDEPK_
USP13	Ubiquitylation	K743	0.438	1.356	_DQALK(gl)ALR_
USP13	Ubiquitylation	K793	-0.216	0.033	_SAADSISESVPVGPK(gl)VR_
USP5	Ubiquitylation	K163	0.116	1.146	_K(gl)QEVQAWDGEVR_
USP5	Ubiquitylation	K184	-0.042	-0.044	_HAFSLK(gl)QLDNPAR_
USP5	Ubiquitylation	K353	1.225		_K(gl)YVDKLEK_
USP5	Ubiquitylation	K357	0.847		_YVDK(gl)LEK_
USP5	Ubiquitylation	K418	0.291	0.339	_MFK(gl)ALIGK_
USP5	Ubiquitylation	K423	0.440	-0.090	_ALIGK(gl)GHPEFSTNR_
USP5	Ubiquitylation	K468	0.433		_FLVEEK(gl)IK_
USP5	Ubiquitylation	K470	-0.606	0.287	_IK(gl)CLATEK_
USP5	Ubiquitylation	K478	0.243	0.990	_CLATEKVK(gl)_
USP5	Ubiquitylation	K558	0.626	0.552	_SVAVK(gl)TTR_
USP5	Phosphorylation	T623	1.685	0.623	_GTGLQPGEEELPDIAPPLVT(ph)PDEPK_
USP5	Ubiquitylation	K743	0.438	1.356	_DQALK(gl)ALR_
USP5	Ubiquitylation	K793	-0.216	0.033	_SAADSISESVPVGPK(gl)VR_
WFS1	Phosphorylation	S32	1.184	1.098	_LNATAS(ph)LEQER_
WFS1	Ubiquitylation	K143		0.703	_EAVK(gl)LLR_