RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
RPL10A	3	-1.410	2.620	0.766	0.140	0.753	-0.444	0.265
HIRA	2	-1.620	2.740		0.660	0.537		0.081
WHSC1	2	1.030	-0.990
EYA4	2	-0.120	0.100
PITX1	1	3.150	-0.920
C22orf39	1	0.860	-0.580		0.660	0.537		0.081
HOXA13	1	-1.850	3.840		-0.027	0.427
HOXA13	1	-1.850	3.840	-1.413				0.651
KRT18	1	0.450	-0.040	0.054			0.780	0.898
PTBP3	1	0.070	0.580		-1.751	2.950	-0.957	0.095
NEDD8	1	1.550	-1.140		1.506	1.366	-0.201	-0.221
NEDD8	1	1.550	-1.140
NEDD8	1	1.550	-1.140	0.333
FBN2	1	1.100	-0.880
EYA3	1	-0.550	0.440
EYA3	1	-0.550	0.440
HTT	1	-0.200	-0.360	0.632			0.847	0.550
HOXA11	0	-0.050	0.240
PKD1	0	-0.900	0.980
SCML1	0	1.260	-0.150
CLTCL1	0	-1.030	1.030
CLTCL1	0	-1.030	1.030	-0.538	-0.243	-0.478	0.375	0.284
IGF2BP2	0	0.940	-0.700	-0.420	-0.768	-0.151	-0.017	0.260
TPD52	0	-0.530	0.450
TPD52	0	-0.530	0.450	0.917	0.236	0.484	0.821	1.162
MCAM	0	0.490	-0.300				1.135	0.754
NFE2L1	0	-0.230	1.010			0.203
FAT1	0	-0.370	0.210
LZTR1	0	0.110	-0.960
SIX4	0	-0.720	1.600
SCML2	0	0.580	-0.370	-0.634	-0.393	-0.105	-0.161	-0.295
EYA1	0	-0.440	-0.140
LIG1	0	0.370	-0.580
GATA3	0	0.000	-0.660
HOXC13	0	0.030	0.890		-0.027	0.427
HOXC13	0	0.030	0.890	-1.413				0.651
MNX1	0	-1.070	1.390
LYVE1	0	-1.030	2.000
IGF2BP3	0	0.270	-0.640	-0.052	-0.850	-0.420	0.103	0.530
RAC1	0	-0.580	1.580	0.486			-0.364	-0.568
SOX13	0	-0.360	0.340
BICD1	0	0.240	-0.570
T	0	0.200	-0.340	-0.755
SIX2	0	1.040	-0.950		-0.334	0.495
PHLDA3	0	-1.120	1.360
DEAF1	0	1.330	-0.440	-1.070
F2R	0	0.220	0.110
MRPL40	0	-0.130	0.440				-1.114	-0.964
SIAH1	0	1.220	-0.570
TRIM13	0	1.450	-0.930
CHUK	0			-0.480

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
BICD1	Phosphorylation	S546	-0.356		_S(ph)GSLKGPDDPR_
BICD1	Phosphorylation	S548	-0.359	0.539	_SGS(ph)LKGPDDPR_
BICD1	Phosphorylation	S860	0.095	0.555	_QFS(ph)PSLCDQSR_
C22orf39	Phosphorylation	T542		0.649	_DSM(ox)NAT(ph)STPAALSPSVLTTPSK_
C22orf39	Phosphorylation	S549	0.985	0.496	_DSM(ox)NATSTPAALS(ph)PSVLTTPSK_
C22orf39	Phosphorylation	S661	2.076	0.577	_LMPVSLSVQS(ph)PAALTAEK_
CHUK	Ubiquitylation	K296		-1.637	_GGPVDLTLK(gl)QPR_
CLTCL1	Ubiquitylation	K83	0.714		_VIALK(gl)AGK_
CLTCL1	Ubiquitylation	K86		0.631	_VIALKAGK(gl)_
CLTCL1	Ubiquitylation	K389	-1.051	-0.085	_VAANAPK(gl)GILR_
CLTCL1	Phosphorylation	T394	-0.123	0.181	_GILRT(ph)PDTIRR_
CLTCL1	Ubiquitylation	K506		0.267	_IVLYAK(gl)K_
CLTCL1	Ubiquitylation	K507	0.050	0.267	_IVLYAKK(gl)_
CLTCL1	Ubiquitylation	K619	-0.177	0.475	_AHIAQLCEK(gl)AGLLQR_
CLTCL1	Ubiquitylation	K737	-0.435	-0.298	_YIQAACK(gl)TGQIK_
CLTCL1	Ubiquitylation	K742	0.005	0.082	_TGQIK(gl)EVER_
CLTCL1	Ubiquitylation	K851		-0.859	_GQFSTDELVAEVEK(gl)R_
CLTCL1	Ubiquitylation	K911	-1.282		_YCEK(gl)RDPHLACVAYER_
CLTCL1	Ubiquitylation	K941		-1.252	_VCNENSLFK(gl)SEAR_
CLTCL1	Ubiquitylation	K1118	-0.674	-0.765	_AQLQK(gl)GMVK_
CLTCL1	Ubiquitylation	K1209		-0.791	_CYDEK(gl)MYDAAK_
CLTCL1	Ubiquitylation	K1443	-2.089	-0.019	_VK(gl)QLPLVKPYLR_
CLTCL1	Ubiquitylation	K1449		-1.977	_AGQLPLVK(gl)PYLR_
CLTCL1	Ubiquitylation	K1449		-2.307	_QLPLVK(gl)PYLR_
CLTCL1	Ubiquitylation	K1516		-0.990	_IAAYLFK(gl)GNNR_
CLTCL1	Ubiquitylation	K1609	-0.714		_EYLTK(gl)VDKLDASESLR_
DEAF1	Phosphorylation	S176	-1.583	-1.990	_GPAAPLTPGPQS(ph)PPTPLAPGQEK_
EYA1	Ubiquitylation	K513		-0.108	_NNVGGLLGPAK(gl)R_
EYA1	Ubiquitylation	K587		-1.219	_IGK(gl)ESCFER_
EYA3	Phosphorylation	S266	-1.629		_LSSGDPSTSPSLS(ph)QTTPSKDTDDQSR_
EYA3	Phosphorylation	S297	3.021		_ADATSS(ph)QDSELER_
EYA3	Ubiquitylation	K587		-1.219	_IGK(gl)ESCFER_
EYA4	Phosphorylation	S4	2.607	2.311	_(ac)M(ox)EDS(ph)QDLNEQSVK_
EYA4	Phosphorylation	S367	-1.041	-1.090	_NNPS(ph)PPPDSDLER_
EYA4	Ubiquitylation	K513		-0.108	_NNVGGLLGPAK(gl)R_
EYA4	Ubiquitylation	K587		-1.219	_IGK(gl)ESCFER_
F2R	Ubiquitylation	K421	0.836	0.568	_MDTCSSNLNNSIYK(gl)K_
FAT1	Ubiquitylation	K313		-0.225	_SFPGSK(gl)EYK_
FAT1	Ubiquitylation	K1542		-1.093	_DQDVPVK(gl)R_
FAT1	Ubiquitylation	K4351	-1.682	-1.804	_KPLEEK(gl)PSQPYSAR_
FBN2	Ubiquitylation	K385		1.550	_MTK(gl)MQCCCEPGR_
FBN2	Ubiquitylation	K712	0.133	1.523	_STCYGGIKK(gl)_
FBN2	Ubiquitylation	K1582		0.690	_VGNCYLK(gl)FGPR_
GATA3	Phosphorylation	S162	-1.195	-0.563	_DVS(ph)PDPSLSTPGSAGSAR_
HIRA	Phosphorylation	T542		0.649	_DSM(ox)NAT(ph)STPAALSPSVLTTPSK_
HIRA	Phosphorylation	S549	0.985	0.496	_DSM(ox)NATSTPAALS(ph)PSVLTTPSK_
HIRA	Phosphorylation	S661	2.076	0.577	_LMPVSLSVQS(ph)PAALTAEK_
HOXA11	Ubiquitylation	K72		-0.905	_EYAIEPATK(gl)WHPR_
HOXA11	Phosphorylation	S84	0.313	0.946	_GNLAHCYS(ph)AEELVHR_
HOXA13	Ubiquitylation	K335	0.431	0.162	_VQLK(gl)ELER_
HOXC13	Ubiquitylation	K335	0.431	0.162	_VQLK(gl)ELER_
HTT	Ubiquitylation	K260		-0.128	_AFIANLK(gl)_
HTT	Phosphorylation	S419	0.595	0.531	_SGS(ph)IVELIAGGGSSCS(ph)PVLSR_
HTT	Phosphorylation	S430	0.402	0.494	_SGSIVELIAGGGSS(ph)CSPVLSR_
HTT	Phosphorylation	S432	0.317	0.640	_SGSIVELIAGGGSSCS(ph)PVLSR_
HTT	Phosphorylation	S1195	-0.222	0.264	_EKEPGEQAS(ph)VPLSPK_
HTT	Phosphorylation	S1199	-0.456	-0.970	_GKEKEPGEQASVPLS(ph)PK_
HTT	Ubiquitylation	K1402	0.169	-0.538	_VSTQLK(gl)TNLTSVTK_
HTT	Phosphorylation	S1874	1.994	1.028	_LLSPQMS(ph)GEEEDSDLAAK_
IGF2BP2	Phosphorylation	S167		-0.503	_ISYIPDEEVS(ph)SPSPPQR_
IGF2BP2	Phosphorylation	S168	-0.699	-0.755	_ISYIPDEEVSS(ph)PSPPQR_
IGF2BP2	Phosphorylation	S170	-0.581	-0.451	_ISYIPDEEVSSPS(ph)PPQR_
IGF2BP2	Ubiquitylation	K276	-1.533		_EADETK(gl)LAEEIPLK_
IGF2BP2	Ubiquitylation	K468	-1.652	-0.521	_FAGASIK(gl)IAPAEGPDVSER_
IGF2BP2	Ubiquitylation	K503	-0.285		_LK(gl)EENFFNPK_
IGF2BP2	Ubiquitylation	K594		-0.483	_QQEQK(gl)YPQGVASQR_
IGF2BP3	Ubiquitylation	K190	-1.912		_QGSPGSVSK(gl)QKPCDLPLR_
IGF2BP3	Ubiquitylation	K272	-0.328	-0.293	_EAQDIK(gl)FTEEIPLK_
IGF2BP3	Ubiquitylation	K450	-1.812	-0.838	_IAPAEAPDAK(gl)VR_
IGF2BP3	Phosphorylation	T528	0.210	0.270	_DQT(ph)PDENDQVVVK_
IGF2BP3	Ubiquitylation	K567	-1.268	-1.607	_QHQQQK(gl)ALQSGPPQSR_
KRT18	Phosphorylation	S51		1.451	_S(ph)TSFRGGMGSGGLATGIAGGLAGMGGIQNEKETMQSLNDR_
KRT18	Phosphorylation	S60	1.699	1.252	_STSFRGGM(ox)GS(ph)GGLATGIAGGLAGM(ox)GGIQNEK_
KRT18	Phosphorylation	T65		1.364	_STSFRGGMGSGGLAT(ph)GIAGGLAGMGGIQNEKETMQSLNDR_
LIG1	Phosphorylation	S49		0.101	_EWNGVVSES(ph)DSPVK_
LIG1	Phosphorylation	S51	0.145	-0.066	_EWNGVVSESDS(ph)PVK_
LIG1	Phosphorylation	S66	0.671	0.408	_VLGS(ph)EGEEEDEALSPAK_
LIG1	Phosphorylation	S76	-0.083	0.108	_VLGSEGEEEDEALS(ph)PAK_
LIG1	Phosphorylation	S88		1.273	_GQKPALDCS(ph)QVSPPRPATSPENNASLSDTSPMDSSPSGIPK_
LIG1	Phosphorylation	S141	0.697	0.877	_TIQEVLEEQS(ph)EDEDREAK_
LIG1	Phosphorylation	T182	-0.768	-0.709	_EGEDGDQPT(ph)TPPKPLK_
LIG1	Phosphorylation	T183	-0.923	-0.825	_EGEDGDQPTT(ph)PPKPLK_
LIG1	Phosphorylation	T195	0.021	0.224	_AET(ph)PTESVS(ph)EPEVATK_
LIG1	Phosphorylation	T197	0.441	0.125	_AETPT(ph)ESVSEPEVATK_
LIG1	Phosphorylation	S199		0.721	_AET(ph)PTES(ph)VSEPEVATK_
LIG1	Phosphorylation	S201	-0.213	0.070	_AET(ph)PTESVS(ph)EPEVATK_
LYVE1	Ubiquitylation	K308		-0.410	_NPEESK(gl)SPSK_
LZTR1	Ubiquitylation	K101		0.120	_FDVK(gl)DCSWCR_
LZTR1	Ubiquitylation	K484	-1.981		_LAQK(gl)LEQEAAPVPR_
MNX1	Phosphorylation	S77	1.417		_LRAES(ph)PSPPR_
MNX1	Ubiquitylation	K240	-0.232	-0.808	_MPDFNSQAQSNLLGK(gl)CR_
NEDD8	Ubiquitylation	K11	0.414		_TLTGK(gl)EIEIDIEPTDKVER_
NEDD8	Ubiquitylation	K22	0.364		_EIEIDIEPTDK(gl)VER_
NEDD8	Ubiquitylation	K27	0.033		_IK(gl)ERVEEK_
NEDD8	Ubiquitylation	K48	0.753	0.302	_LIYSGK(gl)QMNDEK_
NEDD8	Ubiquitylation	K54	1.305	0.078	_QMNDEK(gl)TAADYK_
NFE2L1	Ubiquitylation	K218		-0.644	_QK(gl)EQDVEKELR_
PHLDA3	Ubiquitylation	K158	-0.201	0.733	_EGVLEK(gl)R_
PITX1	Ubiquitylation	K5		1.200	_DAFK(gl)GGM(ox)SLER_
PKD1	Phosphorylation	T867		0.841	_GT(ph)YHVRLEVNNTVSGAAAQADVR_
PTBP3	Phosphorylation	S56	-0.802	-0.313	_RDRPPCS(ph)PSR_
PTBP3	Ubiquitylation	K137	0.374	-0.013	_ELK(gl)TDNLPNQAR_
PTBP3	Ubiquitylation	K423	-0.297		_LYGK(gl)VLR_
PTBP3	Ubiquitylation	K431	0.177		_ATLSK(gl)HQAVQLPR_
RAC1	Ubiquitylation	K115	-1.745	-0.215	_AK(gl)WYPEVR_
RAC1	Ubiquitylation	K142	0.492		_LDLRDDK(gl)DTIEK_
RAC1	Ubiquitylation	K152	0.099	-0.292	_K(gl)LTPITYPQGLAMAK_
RAC1	Ubiquitylation	K166	-0.981	-0.655	_LTPITYPQGLAMAK(gl)EIGAVK_
RAC1	Ubiquitylation	K172	1.026	0.412	_EIGAVK(gl)YLECSALTQR_
RAC1	Ubiquitylation	K185	-0.113	0.578	_GLK(gl)TVFDEAIR_
RAC1	Ubiquitylation	K202	-1.379	-1.447	_AVLCPPPVK(gl)KR_
RAC1	Ubiquitylation	K203	-1.708	-1.447	_AVLCPPPVKK(gl)_
RPL10A	Ubiquitylation	K56	2.047		_LK(gl)STPRPK_
RPL10A	Ubiquitylation	K92	2.236	2.025	_AVDIPHMDIEALKK(gl)_
RPL10A	Ubiquitylation	K106		2.334	_K(gl)YDAFLASESLIK_
RPL10A	Ubiquitylation	K130		2.128	_ILGPGLNK(gl)AGK_
RPL10A	Ubiquitylation	K133	1.266		_ILGPGLNKAGK(gl)_
RPL10A	Ubiquitylation	K152	0.934	1.388	_VDEVK(gl)STIK_
RPL10A	Ubiquitylation	K156	2.380		_STIK(gl)FQMK_
RPL10A	Ubiquitylation	K207	1.019	1.715	_ALYIK(gl)STMGKPQR_
SCML1	Ubiquitylation	K121	0.531		_LKLQK(gl)MK_
SCML1	Phosphorylation	S138	-0.502	-0.417	_NEVYETFSYPESYS(ph)PTLPVSR_
SCML1	Phosphorylation	S150	-0.323	-0.187	_RENNS(ph)PSNLPR_
SCML1	Phosphorylation	S218		-0.356	_ADS(ph)IHNTYSTDHASAAPPSVTR_
SCML1	Phosphorylation	T236	-0.494		_ADSIHNTYSTDHASAAPPSVT(ph)RSPVENDGYIEEGSITK_
SCML1	Phosphorylation	S238	0.237	0.402	_S(ph)PVENDGYIEEGSITK_
SCML1	Ubiquitylation	K325		-0.148	_LKQGK(gl)CFEN_
SCML2	Ubiquitylation	K252	-1.379		_LTGDVLQPPGTSVPIVKNIAK(gl)_
SCML2	Phosphorylation	S255	-0.107		_TES(ph)SPSEASQHSM(ox)QSPQK_
SCML2	Phosphorylation	S256	-0.108	0.813	_TESS(ph)PSEASQHSM(ox)QSPQK_
SCML2	Phosphorylation	S264	-0.439	-0.466	_TESSPSEASQHS(ph)M(ox)QSPQK_
SCML2	Phosphorylation	S267	-0.951	-0.643	_TESSPSEASQHSMQS(ph)PQK_
SCML2	Phosphorylation	S499	-0.475	-0.479	_S(ph)PQQTVPYVVPLSPK_
SCML2	Phosphorylation	T503		-0.639	_RSPQQT(ph)VPYVVPLSPK_
SCML2	Phosphorylation	S511	-0.437	-0.678	_S(ph)PQQTVPYVVPLS(ph)PK_
SCML2	Phosphorylation	S590	0.987	0.738	_SVPGTTSSPLVGDIS(ph)PK_
SCML2	Ubiquitylation	K599	-1.361		_SSPHEVK(gl)FQMQR_
SIAH1	Ubiquitylation	K31		-1.541	_QTATALPTGTSK(gl)CPPSQR_
SIX2	Ubiquitylation	K53	0.475		_AK(gl)AVVAFHR_
SIX4	Phosphorylation	S44	-0.717	-1.599	_EVAGGAAVGLS(ph)PPAPAPFPLEPGDAATAAAR_
SOX13	Phosphorylation	S334		-0.388	_DLQS(ph)SPPSLPLGFLGEGDAVTK_
SOX13	Phosphorylation	S335	-0.275	-0.329	_DLQSS(ph)PPSLPLGFLGEGDAVTK_
SOX13	Phosphorylation	S386	0.754		_DLISLDSS(ph)PAK_
TPD52	Ubiquitylation	K100	-0.081		_VEEEIQTLSQVLAAK(gl)EK_
TPD52	Ubiquitylation	K102	0.492		_VEEEIQTLSQVLAAKEK(gl)_
TPD52	Ubiquitylation	K169	-0.246		_KLEDVK(gl)NSPTFK_
TPD52	Phosphorylation	S171	-0.363	0.174	_KLEDVKNS(ph)PTFK_
TPD52	Phosphorylation	T173	-0.047	0.289	_KLEDVKNSPT(ph)FK_
TPD52	Phosphorylation	S176	0.349	0.394	_S(ph)FEEKVENLK_
TRIM13	Ubiquitylation	K81		-0.953	_GIVEK(gl)YNK_
TRIM13	Ubiquitylation	K168		-0.117	_LDTLETSK(gl)R_
WHSC1	Phosphorylation	T49	-1.049		_GIGT(ph)PPNT(ph)TPIK_
WHSC1	Phosphorylation	T54	-1.049		_GIGT(ph)PPNTT(ph)PIK_
WHSC1	Phosphorylation	T483	-0.839		_RIQDPTEDAEAEDT(ph)PRK_