RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
PUM2	2	0.730	-0.940
FOXO3	2	-0.410	-0.120
RPS14	2	-1.630	2.770	-0.320	-0.508	-0.320	-0.986	-0.190
ELAVL1	1	-0.160	0.190	-0.309	-1.620	-0.465	-0.437	0.244
GCN1L1	1	1.290	-0.930	0.125	-0.510	0.357	0.076	0.016
ACO1	1	-2.080	4.040
EIF2A	1	-0.180	-0.460	-0.199			-1.243	-0.618
EIF4E	1	-2.250	4.200				0.590	0.156
EIF4E	1	-2.250	4.200	0.369
CNOT8	1	-1.460	2.820
PA2G4	1	-0.010	0.070
PA2G4	1	-0.010	0.070		1.801	-3.688
PA2G4	1	-0.010	0.070	0.143			0.006	-0.075
RBM4B	1	-0.900	2.520		0.658	0.120
RBM4B	1	-0.900	2.520					-0.467
SARNP	1	-0.720	1.120
SARNP	1	-0.720	1.120			-1.018
SARNP	1	-0.720	1.120	0.972			0.087	-0.130
EIF2B3	0	1.580	-0.430	-3.615			1.427	1.157
NCK2	0	-0.870	1.530
EIF2AK1	0	0.570	-0.840
MAPKAPK5	0	1.100	-0.730
TNRC6B	0	-1.680	2.330
AKT2	0	-1.420	2.210	-0.194
MTPN	0	-1.050	2.170
CASC3	0	1.440	-1.030
EIF2B1	0	0.560	-0.090
EIF2B1	0	0.560	-0.090
CNOT2	0	-1.010	0.910
CNOT2	0	-0.480	-0.280
QKI	0	1.130	-0.950				-2.091	-0.975
QKI	0	1.130	-0.950	-1.223
EIF2B4	0	-0.600	0.760	-1.449			-0.595	0.243
CNOT1	0			0.579	-0.249		-0.264	-0.019
NGDN	0	-0.760	0.710				-0.376	-0.134
PTCD3	0	0.250	-0.690	0.583	0.046	0.299	0.113	0.535
PUM1	0	-1.440	1.740	-0.867			-1.033	-0.052
IREB2	0	-0.280	-0.190
TACO1	0	-0.360	0.200	-0.207			0.648	0.752
DNAJC1	0	-0.740	2.000				-0.894	0.077
TARBP2	0	1.300	-0.480
APP	0	0.100	-0.260					0.285
AKT1	0	-0.050	0.700
AKT1	0	0.860	-0.040
RQCD1	0	0.120	0.260				-0.119	-0.091
RQCD1	0	0.120	0.260
EIF2B5	0	-0.630	0.250	-0.711			0.154	-0.822
NCK1	0	-0.370	0.580
CNOT11	0	1.350	-0.760	-1.047
PPP1R15B	0	0.820	-0.760
MAGOH	0	0.620	-0.230	0.555			-0.780	0.144
MAGOH	0	0.620	-0.230	0.252	-0.826	-0.734	-0.871	-0.164
METAP1	0	0.150	-0.280				0.170	-0.316
TSC1	0	1.100	-0.150
LARP6	0	-0.010	0.220
RPL38	0	-1.010	1.980	1.241	0.265	0.397	-0.650	0.314
EIF4E1B	0	1.610	-1.080				0.590	0.156
CNOT10	0	0.550	-0.140
CNOT10	0	0.550	-0.140				-0.512	0.364
ZFP36L1	0	1.190	-0.490
CNOT7	0	0.480	-0.730	-0.386
CNOT7	0	0.480	-0.730
ATXN2	0	-0.480	0.100	-1.858			-0.941	-0.424

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ACO1	Ubiquitylation	K79		-0.349	_NIEVPFK(gl)PAR_
ACO1	Ubiquitylation	K396		-0.346	_DFESCLGAK(gl)QGFK_
AKT1	Phosphorylation	S124	0.252	0.311	_SGS(ph)PSDNSGAEEMEVSLAKPK_
AKT1	Phosphorylation	S126	-0.241		_SGSPS(ph)DNSGAEEM(ox)EVSLAK_
AKT1	Ubiquitylation	K301	0.988		_EGIK(gl)DGATMK_
AKT2	Ubiquitylation	K14	0.306	0.070	_EGWLHK(gl)R_
AKT2	Ubiquitylation	K111	1.082		_AIQMVANSLK(gl)QR_
AKT2	Ubiquitylation	K160		0.251	_LLGK(gl)GTFGK_
AKT2	Phosphorylation	T451	-0.091	-0.612	_YFDDEFTAQSITIT(ph)PPDRYDSLGLLELDQR_
AKT2	Phosphorylation	Y456		-0.265	_YFDDEFTAQSITITPPDRY(ph)DSLGLLELDQR_
APP	Ubiquitylation	K751	-1.778	-1.280	_HLSK(gl)M(ox)QQNGYENPTYK_
ATXN2	Ubiquitylation	K349	-0.862	0.369	_DMDSSYAK(gl)R_
ATXN2	Ubiquitylation	K455	-1.801		_ANQLAEEIESSAQYK(gl)AR_
ATXN2	Phosphorylation	S616		-0.891	_RM(ox)S(ph)SEGPPRM(ox)SPK_
ATXN2	Phosphorylation	S624	-1.157	-0.461	_MSSEGPPRMS(ph)PK_
ATXN2	Phosphorylation	S667		0.034	_TS(ph)PSGGTWSSVVSGVPR_
ATXN2	Phosphorylation	S669	0.002	0.244	_TSPS(ph)GGTWSSVVSGVPR_
ATXN2	Phosphorylation	T771	-0.128	-0.274	_QNSPAGNKENIKPNET(ph)SPSFSK_
ATXN2	Phosphorylation	S772	-0.093	-0.116	_ENIKPNETS(ph)PSFSK_
ATXN2	Phosphorylation	S784	-0.208	0.376	_GIS(ph)PVVSEHR_
ATXN2	Phosphorylation	S889		-0.710	_RGPEVTSQGVQTSS(ph)PACK_
CASC3	Phosphorylation	S148	0.609	0.451	_STVTGERQS(ph)GDGQESTEPVENK_
CASC3	Ubiquitylation	K205	-2.945		_GQTQEEEVRPK(gl)GR_
CASC3	Ubiquitylation	K254	-1.517		_SAHNPDDIK(gl)PR_
CASC3	Phosphorylation	S265	-0.457	-0.532	_YGS(ph)PPQR_
CASC3	Ubiquitylation	K344	-1.204		_SGETVK(gl)HEISYR_
CNOT1	Phosphorylation	S1061	0.555	0.326	_TVTVTRPTGVS(ph)FKK_
CNOT1	Ubiquitylation	K1064	-0.495		_TVTVTRPTGVSFKK(gl)_
CNOT1	Ubiquitylation	K1708	0.686		_AYGSPWCNK(gl)QITR_
CNOT1	Ubiquitylation	K2185	-0.010	0.228	_DLDSYLK(gl)TR_
CNOT10	Ubiquitylation	K472	-1.155		_GTSEQETK(gl)GLPSKK_
CNOT11	Ubiquitylation	K327	0.061	-0.335	_NSTGVEIK(gl)R_
CNOT2	Phosphorylation	S80	-0.345	0.395	_TNSMSSSGLGS(ph)PNR_
CNOT7	Ubiquitylation	K200	-1.098	-0.157	_YLMK(gl)SCK_
CNOT8	Ubiquitylation	K200	-1.098	-0.157	_YLMK(gl)SCK_
CNOT8	Ubiquitylation	K269	-0.696	-0.445	_LYGLGTGVAQK(gl)QNEDVDSAQEK_
DNAJC1	Ubiquitylation	K197		0.509	_TGSK(gl)SVDVSK_
DNAJC1	Ubiquitylation	K203	-0.077	0.364	_SVDVSK(gl)LGASEKNER_
DNAJC1	Phosphorylation	S430	0.837	1.071	_EDAEGVAAEEEQEGDS(ph)GEQETGATDARPR_
EIF2A	Ubiquitylation	K40		7.150	_NCK(gl)VCIFSK_
EIF2A	Phosphorylation	S503	-0.843	-0.645	_S(ph)DKSPDLAPTPAPQSTPR_
EIF2A	Phosphorylation	S506	-0.882	-0.939	_SDKS(ph)PDLAPTPAPQSTPR_
EIF2AK1	Phosphorylation	S253	0.026		_AAIELPS(ph)LEVLSDQEEDREQCGVK_
EIF2AK1	Phosphorylation	S258	-0.119	-0.172	_AAIELPSLEVLS(ph)DQEEDREQCGVK_
EIF2B1	Phosphorylation	S7	-0.217	0.063	_LGS(ph)PGAPQQEDAM(ox)DDKELIEYFK_
EIF2B1	Ubiquitylation	K15	-0.476	-0.022	_SQMK(gl)EDPDMASAVAAIR_
EIF2B1	Ubiquitylation	K38	0.287		_DK(gl)GETIQGLR_
EIF2B3	Ubiquitylation	K61	-0.836	-0.162	_DVQK(gl)ALCAEFK_
EIF2B3	Ubiquitylation	K68		-0.565	_ALCAEFK(gl)MK_
EIF2B3	Ubiquitylation	K148	-1.168	-1.682	_KGQDSIEPVPGQKGK(gl)_
EIF2B3	Ubiquitylation	K165	-0.262	-0.491	_DFIGVDSTGK(gl)R_
EIF2B3	Ubiquitylation	K382	-0.991	-0.264	_SVIGSSCLIK(gl)DR_
EIF2B4	Phosphorylation	S21	1.059		_SLS(ph)GSLCALFSDADSGSGM(ox)K_
EIF2B4	Phosphorylation	S151	-1.351	-1.042	_KGEQGGPPPKAS(ph)PSTAGETPSGVK_
EIF2B5	Phosphorylation	S544	0.200	0.349	_GGS(ph)PQM(ox)DDIK_
EIF4E	Ubiquitylation	K147	-0.433	0.065	_WLITLNK(gl)QQR_
EIF4E1B	Ubiquitylation	K147	-0.433	0.065	_WLITLNK(gl)QQR_
ELAVL1	Ubiquitylation	K116	1.733		_LQSK(gl)TIK_
ELAVL1	Ubiquitylation	K119	1.073		_TIK(gl)VSYAR_
ELAVL1	Ubiquitylation	K131	-0.134		_PSSEVIK(gl)DANLYISGLPR_
ELAVL1	Ubiquitylation	K147	0.592	1.144	_TMTQK(gl)DVEDMFSR_
ELAVL1	Phosphorylation	S224	-1.255		_NVALLS(ph)QLYHSPARR_
ELAVL1	Phosphorylation	S229	-1.194	-0.793	_NVALLSQLYHS(ph)PAR_
ELAVL1	Ubiquitylation	K347	1.756	0.731	_ILQVSFK(gl)TNK_
FOXO3	Phosphorylation	S12		-1.324	_(ac)AEAPASPAPLS(ph)PLEVELDPEFEPQSRPR_
FOXO3	Phosphorylation	S253		2.510	_AVS(ph)MDNSNKYTK_
FOXO3	Phosphorylation	S284	4.138	6.011	_AALQTAPESADDS(ph)PSQLSK_
FOXO3	Phosphorylation	S421		1.295	_GS(ph)GLGSPTSSFNSTVFGPSSLNSLR_
FOXO3	Phosphorylation	S425		1.471	_GSGLGS(ph)PTSSFNSTVFGPSSLNSLR_
GCN1L1	Ubiquitylation	K12	0.453	0.104	_(ac)AADTQVSETLK(gl)R_
GCN1L1	Ubiquitylation	K308		-0.980	_GLAGHLK(gl)SNSPR_
GCN1L1	Ubiquitylation	K695		-0.495	_MK(gl)IDPEAFITR_
GCN1L1	Ubiquitylation	K788	-0.424		_SIIQSAQQDSIK(gl)K_
GCN1L1	Ubiquitylation	K789	0.255	-0.354	_SIIQSAQQDSIKK(gl)_
GCN1L1	Ubiquitylation	K829	0.801	-0.151	_GIKEEVQLTSK(gl)QK_
GCN1L1	Ubiquitylation	K1395		-0.248	_K(gl)GAAYGLAGLVK_
GCN1L1	Ubiquitylation	K1514		-1.429	_TK(gl)AGSVELLGAMAYCAPK_
GCN1L1	Ubiquitylation	K1556	0.235		_LTEVLTDSHVKVQK(gl)_
GCN1L1	Ubiquitylation	K1679	1.567	-0.083	_TVSAK(gl)ALGAMVK_
GCN1L1	Ubiquitylation	K2183	2.095	0.580	_SK(gl)ADYTSHLR_
GCN1L1	Ubiquitylation	K2280		-0.810	_EGVLTGSPEQK(gl)EEAAK_
IREB2	Ubiquitylation	K34		-0.190	_LGTK(gl)YDVLPYSIR_
IREB2	Ubiquitylation	K72		-0.991	_TK(gl)QSNVEVPFFPAR_
IREB2	Ubiquitylation	K107		-0.118	_EAVK(gl)TLGGDPEK_
IREB2	Ubiquitylation	K404		0.190	_AK(gl)LESMETYLK_
IREB2	Ubiquitylation	K413		-0.308	_AKLESM(ox)ETYLK(gl)AVK_
IREB2	Ubiquitylation	K461		0.236	_VAVTDMK(gl)SDFQACLNEK_
IREB2	Ubiquitylation	K475		-0.206	_VGFK(gl)GFQIAAEK_
IREB2	Ubiquitylation	K611		0.037	_QGDLVTCGILSGNK(gl)NFEGR_
IREB2	Ubiquitylation	K696	-1.215	-0.023	_IEMGNK(gl)R_
IREB2	Ubiquitylation	K769	-1.464	-0.009	_NSAAAK(gl)YLTNR_
IREB2	Ubiquitylation	K803		0.505	_GTFANIK(gl)LFNK_
IREB2	Ubiquitylation	K847		-0.038	_EGIPLIILAGK(gl)K_
IREB2	Ubiquitylation	K848		-0.038	_EGIPLIILAGK(gl)K_
IREB2	Ubiquitylation	K860		0.906	_DWAAK(gl)GPYLLGVK_
LARP6	Phosphorylation	S56		-0.630	_YLSPGWGS(ph)ASEEEPSR_
LARP6	Phosphorylation	T408	-0.410	0.081	_LNCST(ph)SPEIFR_
LARP6	Phosphorylation	S409	-0.048	-0.243	_LNCSTS(ph)PEIFRK_
LARP6	Phosphorylation	T450	-1.081		_SPGT(ph)SPLLSR_
LARP6	Phosphorylation	S451	-0.786	-0.553	_SPGTS(ph)PLLSR_
MAGOH	Ubiquitylation	K16	0.886		_YYVGHK(gl)GK_
MAGOH	Ubiquitylation	K43	0.470	-0.293	_YANNSNYK(gl)NDVMIR_
MAGOH	Ubiquitylation	K63	0.752	1.122	_SVM(ox)EELK(gl)R_
MAGOH	Ubiquitylation	K116	-0.667		_IGSLIDVNQSK(gl)DPEGLR_
MAPKAPK5	Phosphorylation	T182	-0.559	-0.706	_IDQGDLM(ox)T(ph)PQFTPYYVAPQVLEAQR_
MTPN	Ubiquitylation	K4	0.021		_(ac)CDK(gl)EFMWALK_
MTPN	Phosphorylation	T31		0.488	_GEDVNRT(ph)LEGGR_
MTPN	Ubiquitylation	K90	0.537	-0.107	_LLLSK(gl)GADK_
MTPN	Ubiquitylation	K97	-0.211		_TVK(gl)GPDGLTAFEATDNQAIK_
NCK1	Phosphorylation	S85	-0.027	-0.877	_RKPS(ph)VPDSASPADDSFVDPGER_
NCK1	Phosphorylation	S91		0.493	_RKPSVPDSAS(ph)PADDSFVDPGER_
NCK2	Phosphorylation	S90	-0.317	0.054	_DAS(ph)PTPSTDAEYPANGSGADR_
NGDN	Phosphorylation	S142	-0.040	-0.250	_LS(ph)SEDEEEDEAEDDQSEASGKK_
NGDN	Phosphorylation	S143	0.027	-0.302	_LSS(ph)EDEEEDEAEDDQSEASGKK_
PA2G4	Phosphorylation	S2	0.682	0.779	_S(ph)GEDEQQEQTIAEDLVVTK_
PA2G4	Phosphorylation	T11	0.587	0.951	_S(ph)GEDEQQEQT(ph)IAEDLVVTK_
PA2G4	Ubiquitylation	K51	1.374		_YK(gl)MGGDIANR_
PA2G4	Ubiquitylation	K277	0.023	-0.053	_TTIYK(gl)RDPSK_
PA2G4	Ubiquitylation	K282	-0.045	0.559	_DPSK(gl)QYGLK_
PA2G4	Ubiquitylation	K287		0.472	_QYGLK(gl)MK_
PA2G4	Phosphorylation	S360	0.161	0.753	_ALLQS(ph)SASR_
PPP1R15B	Ubiquitylation	K705		-1.323	_LQGTCFK(gl)GLNVLK_
PUM1	Ubiquitylation	K187	0.356	-0.507	_AMGEQLLPGKK(gl)_
PUM1	Phosphorylation	S745	0.731	0.490	_RDS(ph)LTGSSDLYK_
PUM1	Phosphorylation	T747	0.718		_RDSLT(ph)GSSDLYK_
PUM1	Ubiquitylation	K754	-0.441	0.520	_DSLTGSSDLYK(gl)R_
PUM1	Ubiquitylation	K830	-0.770	-0.249	_YISAAPGAEAK(gl)YR_
PUM1	Phosphorylation	S839		-0.915	_SASSASS(ph)LFSPSSTLFSSSR_
PUM1	Phosphorylation	S842	-0.409	-0.158	_SASSASSLFS(ph)PSSTLFSSSR_
PUM1	Ubiquitylation	K1001	-0.445		_ELDGHVLK(gl)CVK_
PUM2	Phosphorylation	S82	0.718	0.923	_SGQGFHGNSEVNAILS(ph)PR_
PUM2	Phosphorylation	S136	0.233	0.306	_GKAS(ph)PFEEDQNR_
PUM2	Phosphorylation	S182	1.641	2.452	_QAS(ph)PTEVVER_
PUM2	Phosphorylation	S587	1.669	0.831	_RES(ph)LSTSSDLYK_
PUM2	Ubiquitylation	K596	-1.213	0.893	_ESLSTSSDLYK(gl)R_
QKI	Ubiquitylation	K91	-0.019	-0.167	_LYVPVK(gl)EYPDFNFVGR_
QKI	Ubiquitylation	K111	0.236	0.638	_GLTAK(gl)QLEAETGCK_
QKI	Ubiquitylation	K190		-0.178	_LLVPAAEGEDSLK(gl)K_
QKI	Ubiquitylation	K191	0.259	-0.178	_LLVPAAEGEDSLKK(gl)_
RBM4B	Phosphorylation	S86		0.371	_LHVGNIS(ph)PTCTNQELR_
RPL38	Ubiquitylation	K33	-0.764	0.921	_NKDNVK(gl)FK_
RPL38	Ubiquitylation	K57		-0.484	_LK(gl)QSLPPGLAVK_
RPS14	Ubiquitylation	K61		0.532	_VTGGMK(gl)VK_
RPS14	Ubiquitylation	K63	0.781	0.110	_VK(gl)ADRDESSPYAAMLAAQDVAQR_
RPS14	Ubiquitylation	K106	-0.439	-0.553	_TK(gl)TPGPGAQSALR_
RPS14	Ubiquitylation	K125		2.786	_SGMK(gl)IGR_
RPS14	Phosphorylation	S139	-0.352	-0.352	_IEDVTPIPSDS(ph)TR_
RPS14	Phosphorylation	T140	0.284	-0.889	_IEDVTPIPSDST(ph)R_
RQCD1	Ubiquitylation	K44		1.040	_ENALLELSK(gl)K_
RQCD1	Ubiquitylation	K45	-0.182		_ENALLELSKK(gl)R_
SARNP	Ubiquitylation	K12	0.494		_(ac)ATETVELHKLK(gl)_
SARNP	Ubiquitylation	K28	1.542		_GLETK(gl)GIK_
SARNP	Ubiquitylation	K88	0.162		_TVDVAAEK(gl)K_
SARNP	Ubiquitylation	K89	0.162		_TVDVAAEK(gl)K_
SARNP	Ubiquitylation	K120	9.280		_FNVPVSLESKK(gl)_
TARBP2	Phosphorylation	S142	-1.379	-1.564	_S(ph)PPMELQPPVS(ph)PQQSECNPVGALQELVVQK_
TARBP2	Phosphorylation	S152	-0.860	-0.978	_SPPMELQPPVS(ph)PQQSECNPVGALQELVVQK_
TARBP2	Phosphorylation	S156		-0.795	_SPPM(ox)ELQPPVS(ph)PQQSECNPVGALQELVVQK_
TNRC6B	Phosphorylation	S1432	-1.203	-0.920	_GGS(ph)PYNQFDIIPGDTLGGHTGPAGDSWLPAK_
TNRC6B	Phosphorylation	S1461	-0.788	-0.865	_GGSPYNQFDIIPGDTLGGHTGPAGDSWLPAKS(ph)PPTNK_
TNRC6B	Phosphorylation	T1464		-0.696	_GGSPYNQFDIIPGDTLGGHTGPAGDSWLPAKSPPT(ph)NK_
TNRC6B	Phosphorylation	S1512		0.304	_GIQNIDPESDPYVTPGSVLGGTATS(ph)PIVDTDHQLLR_
TSC1	Phosphorylation	S505	0.141	0.350	_GGFDS(ph)PFYR_
ZFP36L1	Ubiquitylation	K103		-1.487	_LLPTQK(gl)QPGGGQVNSSR_