bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »
bioLOGIC Data

bioLOGIC Data


Exact search

Query: CNOT1

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
CNOT1 0 1.842 0.579 -0.249 -0.264 -0.019

PTM Sites:

Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
CNOT1 Phosphorylation S1061 0.555 0.326 _TVTVTRPTGVS(ph)FKK_
CNOT1 Ubiquitylation K2185 -0.010 0.228 _DLDSYLK(gl)TR_
CNOT1 Ubiquitylation K1064 -0.495 _TVTVTRPTGVSFKK(gl)_
CNOT1 Ubiquitylation K1708 0.686 _AYGSPWCNK(gl)QITR_

Background Information for CNOT1:





Protein-protein Interactions for CNOT1

Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait BAG6;BAT3 Cat. description Hein, Mann, Cell 2015
Category members IP bait CNOT1 Cat. description Hein, Mann, Cell 2015
Category members IP bait CNOT2 Cat. description Hein, Mann, Cell 2015
Category members IP bait REEP5 Cat. description Hein, Mann, Cell 2015
Category members IP bait TNKS1BP1 Cat. description Hein, Mann, Cell 2015
Category members IP bait VPS4B Cat. description Hein, Mann, Cell 2015
Category members IP bait C2orf29 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait CAPZA2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait CNOT7 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait GADD45B Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait GPBP1L1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait IZUMO1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait MMP7 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait NANOS2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait RIBC1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TEX13A Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TOB1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in CNOT1

Domain name Domain Description TC-NER relevance -log10(p-value)
Category members ARM-type_fold IPR016024 9.26


Protein complexes (CORUM database) featuring CNOT1

Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring CNOT1

Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0005829 cytosol Database INF
Category members GO Category GO:0010467 gene expression Database INF
Category members GO Category GO:0016070 RNA metabolic process Database INF
Category members GO Category GO:0016071 mRNA metabolic process Database INF
Category members GO Category GO:0005488 binding Database 9.32
Category members GO Category GO:0006351 transcription, DNA-templated Database 1.07
Category members GO Category GO:0007275 multicellular organismal development Database 0.31
Category members Pathway Pathway_310 KEGG_RNA_DEGRADATION 0 0.26
Category members GO Category GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay Database 0.17
Category members GO Category GO:0000932 cytoplasmic mRNA processing body Database 0.08
Category members GO Category GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening Database 0.06
Category members GO Category GO:0000122 negative regulation of transcription from RNA polymerase II promoter Database 0.02
Category members GO Category GO:0042974 retinoic acid receptor binding Database 0.02
Category members GO Category GO:0048387 negative regulation of retinoic acid receptor signaling pathway Database 0.01
Category members GO Category GO:0005778 peroxisomal membrane Database 0.01
Category members GO Category GO:0004535 poly(A)-specific ribonuclease activity Database 0
Category members GO Category GO:0006417 regulation of translation Database 0
Category members GO Category GO:0010606 positive regulation of cytoplasmic mRNA processing body assembly Database 0
Category members GO Category GO:0030014 CCR4-NOT complex Database 0
Category members GO Category GO:0030331 estrogen receptor binding Database 0
Category members GO Category GO:0031047 gene silencing by RNA Database 0
Category members GO Category GO:0033147 negative regulation of intracellular estrogen receptor signaling pathway Database 0
Category members GO Category GO:0060213 positive regulation of nuclear-transcribed mRNA poly(A) tail shortening Database 0


© Copyright Svejstrup Laboratory 2015