RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
TOP1	3	0.970	-0.880
TOP1	3	0.970	-0.880	0.567	0.872	1.232	0.631	0.425
AGO4	2	2.110	-1.140
AGO4	2	2.110	-1.140		0.303	-0.277	-0.950	0.328
AGO1	1	1.720	-1.200
AGO1	1	1.720	-1.200		0.303	-0.277	-0.950	0.328
AGO2	1	0.370	-0.620		0.303	-0.277	-0.950	0.328
CAPRIN1	1	0.660	-0.210	0.762	1.503	0.379	0.094	-0.014
EIF4E	1	-2.250	4.200				0.590	0.156
EIF4E	1	-2.250	4.200	0.369
MOV10	1	-1.600	2.780	0.306		-0.640	0.908	0.935
PSMC3	1			-0.227		-0.102	0.203	1.582
MEX3A	1	0.410	0.070
UPF1	0			-0.362	-0.954	-0.781	-0.966	-0.333
EDC4	0	1.140	-0.850	1.220			0.146	0.040
PSMA4	0
PSMA4	0			-0.383	-1.793	-0.367	-0.745	-0.334
BTBD1	0	-0.760	1.580
BTBD1	0	-0.760	1.580
TNRC6B	0	-1.680	2.330
PSMA6	0			-0.525	0.954	0.421	0.792	0.604
PSMA2	0			-0.344		0.665
XRN1	0	1.680	-1.120
XRN1	0	1.680	-1.120	-0.304			-0.943	0.164
CNOT1	0			0.579	-0.249		-0.264	-0.019
AGO3	0	0.130	-0.440
APOBEC3F	0	-0.400	0.970		-0.141	0.306	1.390	0.929
AJUBA	0	-0.310	0.400
LIN28A	0	0.700	-0.230
TRIM21	0	-0.230	-0.010		-0.266	-0.252
BTBD2	0	-0.930	0.460
PAN2	0	-0.210	0.670
RC3H1	0	0.860	-0.340
RQCD1	0	0.120	0.260				-0.119	-0.091
RQCD1	0	0.120	0.260
LIMD1	0	0.370	-0.740
CARHSP1	0	-0.530	-0.090
SQSTM1	0	-0.860	1.770	-2.165			-2.063	-1.741
SQSTM1	0	-0.440	0.530	-2.165			-2.063	-1.741
PSMC2	0	0.410	-0.640	-0.349		-0.102	-0.395	-0.245
PATL1	0	1.310	-0.500
EDC3	0	-0.320	1.230
PNRC2	0	-0.420	0.140
CNOT7	0	0.480	-0.730	-0.386
CNOT7	0	0.480	-0.730
APOBEC3D	0				-0.141	0.306	1.390	0.929

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AGO1	Ubiquitylation	K364	0.517	1.241	_LTDNQTSTMIK(gl)ATAR_
AGO1	Ubiquitylation	K381		0.665	_SAPDRQEEISK(gl)LMR_
AGO1	Phosphorylation	S387		-0.656	_SAS(ph)FNTDPYVR_
AGO1	Ubiquitylation	K550	0.445	1.991	_VGDTVLGMATQCVQMK(gl)NVQR_
AGO1	Ubiquitylation	K720	-1.047	0.670	_LFCTDK(gl)NER_
AGO1	Ubiquitylation	K726	0.458	0.936	_VGK(gl)SGNIPAGTTVDTK_
AGO2	Ubiquitylation	K381		0.665	_SAPDRQEEISK(gl)LMR_
AGO2	Phosphorylation	S387		-0.656	_SAS(ph)FNTDPYVR_
AGO2	Ubiquitylation	K550	0.445	1.991	_VGDTVLGMATQCVQMK(gl)NVQR_
AGO2	Ubiquitylation	K720	-1.047	0.670	_LFCTDK(gl)NER_
AGO2	Ubiquitylation	K726	0.458	0.936	_VGK(gl)SGNIPAGTTVDTK_
AGO3	Ubiquitylation	K364	0.517	1.241	_LTDNQTSTMIK(gl)ATAR_
AGO4	Ubiquitylation	K364	0.517	1.241	_LTDNQTSTMIK(gl)ATAR_
AGO4	Ubiquitylation	K381		0.665	_SAPDRQEEISK(gl)LMR_
AGO4	Phosphorylation	S387		-0.656	_SAS(ph)FNTDPYVR_
AGO4	Ubiquitylation	K550	0.445	1.991	_VGDTVLGMATQCVQMK(gl)NVQR_
AGO4	Ubiquitylation	K720	-1.047	0.670	_LFCTDK(gl)NER_
AGO4	Ubiquitylation	K726	0.458	0.936	_VGK(gl)SGNIPAGTTVDTK_
AJUBA	Phosphorylation	S119	0.930		_LEPTAPALS(ph)PR_
APOBEC3D	Ubiquitylation	K197	0.530		_GLK(gl)TNFR_
APOBEC3F	Ubiquitylation	K197	0.530		_GLK(gl)TNFR_
BTBD1	Phosphorylation	S30		-2.969	_(ac)ASLGPAAAGEQASGAEAEPGPAGPPPPPS(ph)PSSLGPLLPLQR_
BTBD1	Ubiquitylation	K52	-0.631	-0.663	_EPLYNWQATK(gl)ASLK_
BTBD1	Ubiquitylation	K77	-0.220	-0.149	_FVLGK(gl)GR_
BTBD1	Ubiquitylation	K266		-0.567	_QQLPVTFGNKQK(gl)_
BTBD1	Ubiquitylation	K328		0.015	_GK(gl)ECCINR_
BTBD1	Ubiquitylation	K388	-0.174		_K(gl)QTLGQNDTGFSCDGTANTFR_
BTBD1	Ubiquitylation	K439	0.072		_GPDSHYGTK(gl)GLK_
BTBD2	Ubiquitylation	K100	-0.642	-0.688	_EAAYNWQASK(gl)PTVQER_
BTBD2	Ubiquitylation	K481	-1.154	-1.163	_GPDSHYGTK(gl)GLR_
CAPRIN1	Ubiquitylation	K63	1.347		_QILGVIDK(gl)K_
CAPRIN1	Ubiquitylation	K64	1.213	1.269	_QILGVIDKK(gl)_
CAPRIN1	Ubiquitylation	K74	0.036		_GK(gl)LDDYQER_
CAPRIN1	Ubiquitylation	K125	1.014		_SFMALSQDIQK(gl)TIK_
CAPRIN1	Ubiquitylation	K223	-0.252	-0.360	_EK(gl)PVCGTTYK_
CAPRIN1	Ubiquitylation	K231	0.419		_EKPVCGTTYK(gl)VLK_
CARHSP1	Phosphorylation	T23	-1.239	-2.277	_(ac)SSEPPPPPQPPTHQASVGLLDT(ph)PR_
CARHSP1	Phosphorylation	S26	-1.033	-1.560	_(ac)SSEPPPPPQPPTHQASVGLLDTPRS(ph)R_
CARHSP1	Phosphorylation	S30	0.050	0.327	_ERS(ph)PSPLR_
CARHSP1	Phosphorylation	S41	-0.388	-0.186	_GNVVPS(ph)PLPTR_
CARHSP1	Phosphorylation	T45	-0.361	-0.197	_GNVVPSPLPT(ph)RR_
CARHSP1	Phosphorylation	S52	0.962	1.077	_TFS(ph)ATVR_
CARHSP1	Ubiquitylation	K64	-0.088	0.450	_ASQGPVYK(gl)GVCK_
CNOT1	Phosphorylation	S1061	0.555	0.326	_TVTVTRPTGVS(ph)FKK_
CNOT1	Ubiquitylation	K1064	-0.495		_TVTVTRPTGVSFKK(gl)_
CNOT1	Ubiquitylation	K1708	0.686		_AYGSPWCNK(gl)QITR_
CNOT1	Ubiquitylation	K2185	-0.010	0.228	_DLDSYLK(gl)TR_
CNOT7	Ubiquitylation	K200	-1.098	-0.157	_YLMK(gl)SCK_
EDC3	Phosphorylation	S131	0.233	0.276	_SQDVAVS(ph)PQQQQCSK_
EDC3	Phosphorylation	S161	0.603	0.607	_HNS(ph)WSSSSR_
EDC4	Phosphorylation	S6	0.694	0.508	_(ac)ASCAS(ph)IDIEDATQHLR_
EDC4	Ubiquitylation	K111	0.746		_EVEIVASSDSSISSK(gl)AR_
EDC4	Phosphorylation	S723	-0.821	-0.217	_GPGQVPTATSALSLELQEVEPLGLPQAS(ph)PSR_
EDC4	Phosphorylation	S725	-0.736	-0.860	_GPGQVPTATSALSLELQEVEPLGLPQAS(ph)PSR_
EDC4	Phosphorylation	T727	0.284	0.193	_T(ph)RSPDVISSASTALSQDIPEIASEALSR_
EDC4	Phosphorylation	S729	-0.039	0.192	_S(ph)PDVISSASTALSQDIPEIASEALSR_
EDC4	Phosphorylation	S734	0.095		_TRS(ph)PDVIS(ph)SASTALSQDIPEIASEALSR_
EDC4	Phosphorylation	S741	0.242	1.055	_T(ph)RSPDVISSASTALS(ph)QDIPEIASEALSR_
EDC4	Phosphorylation	S780		-0.253	_GFGSSAPEGLEPDSMASAASALHLLS(ph)PRPR_
EDC4	Phosphorylation	S844	-0.222	0.517	_ETCSTLAES(ph)PR_
EDC4	Phosphorylation	S879	0.781	0.805	_DSQDASAEQS(ph)DHDDEVASLASASGGFGTK_
EIF4E	Ubiquitylation	K147	-0.433	0.065	_WLITLNK(gl)QQR_
LIMD1	Phosphorylation	S314	-0.499	-0.597	_S(ph)NSGLGGEVSGVMSKPNVDPQPWFQDGPK_
LIMD1	Phosphorylation	S316	-0.121	-0.506	_SNS(ph)GLGGEVSGVM(ox)SKPNVDPQPWFQDGPK_
LIMD1	Phosphorylation	S384	0.174	0.127	_LS(ph)PTSLVHPVMSTLPELSCK_
LIN28A	Ubiquitylation	K102		-0.047	_SAK(gl)GLESIR_
MEX3A	Phosphorylation	S462		1.523	_LGGGGLRS(ph)PGGGR_
MOV10	Ubiquitylation	K90	-0.738	-1.666	_WADVRFPEK(gl)R_
MOV10	Ubiquitylation	K94	0.142		_MK(gl)LGSDISK_
MOV10	Ubiquitylation	K489		-1.796	_DVPLLPSDVK(gl)LK_
MOV10	Ubiquitylation	K491	-1.931	-1.796	_DVPLLPSDVKLK(gl)_
MOV10	Ubiquitylation	K816	0.014		_LLLAPSSK(gl)K_
MOV10	Ubiquitylation	K817	0.014	-0.549	_LLLAPSSKK(gl)_
MOV10	Ubiquitylation	K846	-0.101	0.119	_YCITK(gl)LDR_
MOV10	Ubiquitylation	K858	0.014	-0.307	_GLDDIK(gl)DLK_
MOV10	Phosphorylation	S969	-0.003	-0.113	_LS(ph)PSTSGPHSHDYLPQER_
PAN2	Phosphorylation	S671	0.047	0.183	_CGS(ph)ETVRAS(ph)STLLFT(ph)LS(ph)YPDGS(ph)K_
PAN2	Phosphorylation	S677	0.047	0.183	_CGS(ph)ETVRAS(ph)STLLFT(ph)LS(ph)YPDGS(ph)K_
PAN2	Phosphorylation	T683	0.047	0.183	_CGS(ph)ETVRAS(ph)STLLFT(ph)LS(ph)YPDGS(ph)K_
PAN2	Phosphorylation	S685	0.047	0.183	_CGS(ph)ETVRAS(ph)STLLFT(ph)LS(ph)YPDGS(ph)K_
PAN2	Phosphorylation	S690	0.047	0.183	_CGS(ph)ETVRAS(ph)STLLFT(ph)LS(ph)YPDGS(ph)K_
PAN2	Ubiquitylation	K706		0.506	_NYDFAQVLK(gl)R_
PAN2	Phosphorylation	S791	0.606	0.694	_ELGS(ph)PEGVLVCPSIEELK_
PAN2	Ubiquitylation	K997		-2.499	_SDGTK(gl)STIKPSQMSVAR_
PATL1	Phosphorylation	T178		-0.080	_RST(ph)SPIIGSPPVR_
PATL1	Phosphorylation	S179	-0.148	-0.186	_RSTS(ph)PIIGSPPVR_
PATL1	Phosphorylation	S184	-0.543	-0.522	_STS(ph)PIIGS(ph)PPVR_
PNRC2	Ubiquitylation	K19		-1.377	_NVSK(gl)NQQQLNR_
PNRC2	Ubiquitylation	K86		-0.442	_LLFK(gl)SQANQNYAGAK_
PSMA2	Ubiquitylation	K50		-1.081	_AANGVVLATEK(gl)K_
PSMA2	Ubiquitylation	K51		-0.660	_AANGVVLATEKK(gl)_
PSMA2	Ubiquitylation	K53	-2.456	-0.806	_QK(gl)SILYDER_
PSMA2	Ubiquitylation	K64	-1.398	-0.958	_SVHK(gl)VEPITK_
PSMA2	Ubiquitylation	K70	-0.584		_VEPITK(gl)HIGLVYSGMGPDYR_
PSMA2	Ubiquitylation	K165	-0.769	-0.362	_ATAMGK(gl)NYVNGK_
PSMA2	Ubiquitylation	K171	-0.681	-0.416	_NYVNGK(gl)TFLEK(gl)R_
PSMA2	Ubiquitylation	K176		-0.342	_NYVNGK(gl)TFLEK(gl)R_
PSMA4	Ubiquitylation	K176	1.345	0.502	_ATCIGNNSAAAVSMLK(gl)QDYK_
PSMA4	Ubiquitylation	K180		-0.775	_QDYK(gl)EGEMTLK_
PSMA4	Ubiquitylation	K199	-0.456	0.252	_VLNK(gl)TMDVSK_
PSMA4	Ubiquitylation	K205		-0.630	_TMDVSK(gl)LSAEK_
PSMA4	Ubiquitylation	K210		-1.092	_LSAEK(gl)VEIATLTR_
PSMA4	Ubiquitylation	K222	-1.085	0.196	_ENGK(gl)TVIR_
PSMA4	Ubiquitylation	K231	-0.975	-0.228	_QK(gl)EVEQLIK_
PSMA4	Ubiquitylation	K238	-1.175	-0.141	_QKEVEQLIK(gl)K_
PSMA6	Ubiquitylation	K45	-0.348	0.048	_GK(gl)DCAVIVTQK_
PSMA6	Ubiquitylation	K55	-0.129	0.038	_GKDCAVIVTQKK(gl)_
PSMA6	Ubiquitylation	K102	0.229	0.506	_YEAANWK(gl)YK_
PSMA6	Ubiquitylation	K104		0.926	_YEAANWK(gl)YK_
PSMA6	Ubiquitylation	K116	-1.065	-0.664	_YGYEIPVDMLCK(gl)R_
PSMA6	Ubiquitylation	K170	-0.696		_CDPAGYYCGFK(gl)ATAAGVK_
PSMA6	Ubiquitylation	K177	-0.464	-0.324	_ATAAGVK(gl)QTESTSFLEK_
PSMA6	Ubiquitylation	K187	0.017		_QTESTSFLEK(gl)K_
PSMA6	Ubiquitylation	K188	-0.004	-0.098	_QTESTSFLEKK(gl)_
PSMC2	Ubiquitylation	K34	-0.054	0.133	_ALDEGDIALLK(gl)TYGQSTYSR_
PSMC2	Ubiquitylation	K57	0.210	0.513	_QVEDDIQQLLK(gl)K_
PSMC2	Ubiquitylation	K58	-0.922	0.072	_K(gl)INELTGIK_
PSMC2	Ubiquitylation	K100	-0.369	-0.790	_CTK(gl)IINADSEDPK_
PSMC2	Ubiquitylation	K116	0.388	0.726	_YIINVK(gl)QFAK_
PSMC2	Ubiquitylation	K186	0.125	0.175	_EQIEK(gl)LR_
PSMC2	Ubiquitylation	K222		-0.623	_GVLLFGPPGTGK(gl)TLCAR_
PSMC2	Ubiquitylation	K248	0.800	0.448	_VIGSELVQK(gl)YVGEGAR_
PSMC2	Ubiquitylation	K402	0.399	0.263	_K(gl)IATEKDFLEAVNK_
PSMC2	Ubiquitylation	K407	-0.357	0.298	_IATEK(gl)DFLEAVNK_
PSMC2	Ubiquitylation	K418	-0.387	0.079	_VIK(gl)SYAK_
PSMC2	Ubiquitylation	K422	-0.462	-0.406	_SYAK(gl)FSATPR_
PSMC3	Phosphorylation	S9	-0.089	0.162	_(ac)MNLLPNIES(ph)PVTR_
PSMC3	Ubiquitylation	K16	-0.007		_QEK(gl)MATVWDEAEQDGIGEEVLK_
PSMC3	Ubiquitylation	K53	1.141		_LLDSEIK(gl)IMK_
PSMC3	Ubiquitylation	K56	0.171	0.893	_IMK(gl)SEVLR_
PSMC3	Ubiquitylation	K70	0.813	0.938	_VTHELQAMK(gl)DK_
PSMC3	Ubiquitylation	K79	0.527		_IKENSEK(gl)IK_
PSMC3	Ubiquitylation	K81	0.303		_IKENSEKIK(gl)_
PSMC3	Ubiquitylation	K125	0.211	0.991	_CAVIK(gl)TSTR_
PSMC3	Ubiquitylation	K146	-0.149	0.433	_LK(gl)PGDLVGVNK_
PSMC3	Ubiquitylation	K245	0.156	0.587	_ACAAQTK(gl)ATFLK_
PSMC3	Ubiquitylation	K276	0.816	1.261	_DAFALAK(gl)EK_
PSMC3	Ubiquitylation	K278		0.568	_DAFALAKEK(gl)_
PSMC3	Ubiquitylation	K300	0.061	0.623	_RFDSEK(gl)AGDREVQR_
PSMC3	Ubiquitylation	K372	-0.011	-0.132	_K(gl)MNVSPDVNYEELAR_
PSMC3	Ubiquitylation	K431	1.026	0.632	_K(gl)KANLQYYA_
PSMC3	Ubiquitylation	K432	1.026	0.798	_K(gl)ANLQYYA_
RC3H1	Phosphorylation	S462	-0.979	-0.578	_RPLSAS(ph)LGQLNEVGLPSAAILPDEGAVDLPSR_
RC3H1	Phosphorylation	S535	1.431	0.918	_IDHLSSSAPGS(ph)PPDLLESVPK_
RQCD1	Ubiquitylation	K44		1.040	_ENALLELSK(gl)K_
RQCD1	Ubiquitylation	K45	-0.182		_ENALLELSKK(gl)R_
SQSTM1	Ubiquitylation	K13	0.150	0.302	_AYLLGK(gl)EDAAR_
SQSTM1	Phosphorylation	S28		-0.721	_RFSFCCS(ph)PEPEAEAEAAAGPGPCER_
SQSTM1	Ubiquitylation	K141	-0.915		_YK(gl)CSVCPDYDLCSVCEGK_
SQSTM1	Ubiquitylation	K157	-0.852	-0.677	_CSVCPDYDLCSVCEGK(gl)GLHR_
SQSTM1	Phosphorylation	T269	-0.681	-0.421	_LT(ph)PVS(ph)PESSSTEEK_
SQSTM1	Phosphorylation	S272	0.171	0.044	_LTPVS(ph)PESSSTEEK_
SQSTM1	Phosphorylation	S332		-0.007	_IALESEGRPEEQMESDNCS(ph)GGDDDWTHLSSK_
SQSTM1	Ubiquitylation	K420	-1.122	-0.061	_LLQTK(gl)NYDIGAALDTIQYSK_
SQSTM1	Ubiquitylation	K435	-1.352	-0.780	_NYDIGAALDTIQYSK(gl)HPPPL_
TNRC6B	Phosphorylation	S1432	-1.203	-0.920	_GGS(ph)PYNQFDIIPGDTLGGHTGPAGDSWLPAK_
TNRC6B	Phosphorylation	S1461	-0.788	-0.865	_GGSPYNQFDIIPGDTLGGHTGPAGDSWLPAKS(ph)PPTNK_
TNRC6B	Phosphorylation	T1464		-0.696	_GGSPYNQFDIIPGDTLGGHTGPAGDSWLPAKSPPT(ph)NK_
TNRC6B	Phosphorylation	S1512		0.304	_GIQNIDPESDPYVTPGSVLGGTATS(ph)PIVDTDHQLLR_
TOP1	Phosphorylation	S10	0.973	1.937	_(ac)SGDHLHNDS(ph)QIEADFR_
TOP1	Ubiquitylation	K245	2.277		_FYYDGK(gl)VMK_
TOP1	Ubiquitylation	K252		1.900	_LSPK(gl)AEEVATFFAK_
TOP1	Ubiquitylation	K391	0.019		_DAK(gl)VPSPPPGHK_
TOP1	Ubiquitylation	K545	2.178		_YYNKVPVEK(gl)R_
TOP1	Ubiquitylation	K642	2.317		_TFEK(gl)SMMNLQTK_
UPF1	Ubiquitylation	K321		0.611	_LK(gl)ESQTQDNITVR_
UPF1	Ubiquitylation	K340	-1.693		_WDLGLNKK(gl)_
UPF1	Ubiquitylation	K378	-1.658		_YK(gl)GDLAPLWK_
UPF1	Ubiquitylation	K638	-2.024	-0.456	_LAK(gl)MQFR_
UPF1	Ubiquitylation	K790	0.647	0.880	_ITTK(gl)LLK_
UPF1	Ubiquitylation	K793	-2.075		_LLK(gl)AGAKPDQIGIITPYEGQR_
UPF1	Phosphorylation	S1107	0.100	0.763	_SQIDVALS(ph)QDSTYQGER_
XRN1	Phosphorylation	S814		-0.523	_ENEVQSSHHGEPPSEEHLS(ph)PQSFAM(ox)K_