bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: LIMD1

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
LIMD1 0 0.301 0.370 -0.740

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
LIMD1 Phosphorylation S384 0.174 0.127 _LS(ph)PTSLVHPVMSTLPELSCK_
LIMD1 Phosphorylation S316 -0.121 -0.506 _SNS(ph)GLGGEVSGVM(ox)SKPNVDPQPWFQDGPK_
LIMD1 Phosphorylation S314 -0.499 -0.597 _S(ph)NSGLGGEVSGVMSKPNVDPQPWFQDGPK_

Background Information for LIMD1:


Pubmed-LIMD1 »
Uniprot-LIMD1 »
Biogrid-LIMD1 »
ProteomicsDB-LIMD1 »

Tumorportal-LIMD1 »
COSMIC-LIMD1 »
GenomeRNAi-LIMD1 »
Genecards-LIMD1


Protein-protein Interactions for LIMD1
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait PPP2R1A Cat. description Hein, Mann, Cell 2015
Category members IP bait PPP2R3A Cat. description Hein, Mann, Cell 2015
Category members IP bait AURKA Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait C1orf105 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait GOLGA4 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait LGALS12 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait LMO2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait LPXN Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait MAP3K6 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait PDLIM7 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait PFDN2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait PHYHIP Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait PPP2R3A Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait RFPL4B Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SLC27A3 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TEKT3 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TRIM35 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TRIP6 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait ZFYVE1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait ZNF576 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait ZNF843 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in LIMD1
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Znf_LIM IPR001781 0


Protein complexes (CORUM database) featuring LIMD1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring LIMD1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0005737 cytoplasm Database 12.81
Category members GO Category GO:0045892 negative regulation of transcription, DNA-dependent Database 1.15
Category members GO Category GO:0006351 transcription, DNA-templated Database 1.07
Category members GO Category GO:0005925 focal adhesion Database 0.68
Category members GO Category GO:0007275 multicellular organismal development Database 0.31
Category members GO Category GO:0045668 negative regulation of osteoblast differentiation Database 0.29
Category members GO Category GO:0008270 zinc ion binding Database 0.29
Category members GO Category GO:0005912 adherens junction Database 0.25
Category members GO Category GO:0016310 phosphorylation Database 0.21
Category members GO Category GO:0016442 RISC complex Database 0.18
Category members GO Category GO:0002076 osteoblast development Database 0.13
Category members GO Category GO:0000932 cytoplasmic mRNA processing body Database 0.08
Category members GO Category GO:0033962 cytoplasmic mRNA processing body assembly Database 0.07
Category members GO Category GO:0035195 gene silencing by miRNA Database 0.04
Category members GO Category GO:0001666 response to hypoxia Database 0
Category members GO Category GO:0003714 transcription corepressor activity Database 0
Category members GO Category GO:0006355 regulation of transcription, DNA-dependent Database 0
Category members GO Category GO:0007010 cytoskeleton organization Database 0
Category members GO Category GO:0007165 signal transduction Database 0
Category members GO Category GO:0008360 regulation of cell shape Database 0
Category members GO Category GO:0016477 cell migration Database 0
Category members GO Category GO:0035331 negative regulation of hippo signaling Database 0


.

© Copyright Svejstrup Laboratory 2015