RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
SKI	1	-1.870	2.800		-1.139	-0.588
HDAC7	0	-0.840	1.260
HDAC4	0	1.730	-0.740
CDK6	0	-0.190	0.160
CDK6	0	-0.190	0.160				-0.510	0.013
SUFU	0	1.190	-0.990
HDAC5	0	-0.830	1.270
ID2	0	-0.080	-0.630
TWIST1	0	-0.640	1.150
TWSG1	0	0.420	-0.740
MEN1	0	1.080	-1.150	0.101			0.684	-0.063
MEN1	0	1.080	-1.150			0.395
MEN1	0	1.080	-1.150
TOB1	0	1.290	-1.000
LIMD1	0	0.370	-0.740
HAND2	0	0.000	0.600
SMAD3	0	-1.560	1.800
SMAD3	0	0.270	-0.340
SOX2	0	-0.250	0.870
PTCH1	0	0.630	-0.690
SEMA4D	0	-0.540	0.790
SEMA4D	0	0.260	-0.350
NBR1	0	0.470	-0.040	-2.408
TWIST2	0	-0.590	0.140

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
CDK6	Ubiquitylation	K3	0.121	0.039	_(ac)MEK(gl)DGLCR_
CDK6	Phosphorylation	S236		0.095	_QDDS(ph)PSGASYGQDYDLS(ph)PSR_
CDK6	Phosphorylation	S249		0.095	_QDDS(ph)PSGASYGQDYDLS(ph)PSR_
CDK6	Phosphorylation	S385		0.649	_HSSIS(ph)PVRLPLNSSLGAELSR_
CDK6	Phosphorylation	S420	0.004	-0.202	_ES(ph)KGSPVFLPR_
CDK6	Phosphorylation	S423	-0.155	-0.297	_GS(ph)PVFLPR_
CDK6	Phosphorylation	T514	0.364	0.570	_DSKPIALKEEIVT(ph)PK_
CDK6	Phosphorylation	S681	-2.532	-2.051	_HLLTDLPLPPELPGGDLS(ph)PPDS(ph)PEPK_
CDK6	Phosphorylation	S685		-2.729	_HLLTDLPLPPELPGGDLS(ph)PPDS(ph)PEPK_
CDK6	Phosphorylation	T692	-0.765	-1.849	_AIT(ph)PPQQPYK_
CDK6	Phosphorylation	S1082	-1.661	-0.980	_KETTSGTSTEPVKNS(ph)SPAPPQPAPGK_
CDK6	Phosphorylation	S1083	-1.093	-1.330	_NSS(ph)PAPPQPAPGK_
CDK6	Phosphorylation	T1244		-0.956	_RT(ph)PTMPQEEAAACPPHILPPEK_
HAND2	Ubiquitylation	K183	0.800	1.236	_K(gl)ELNEILK_
HDAC4	Phosphorylation	S265		-0.390	_RS(ph)SPLLR_
HDAC4	Phosphorylation	S266	-0.821	-0.598	_RSS(ph)PLLR_
HDAC4	Phosphorylation	S632	-1.146	-0.837	_AQS(ph)SPASATFPVSVQEPPTKPR_
HDAC5	Phosphorylation	S265		-0.390	_RS(ph)SPLLR_
HDAC5	Phosphorylation	S266	-0.821	-0.598	_RSS(ph)PLLR_
HDAC7	Phosphorylation	S181	-0.436	0.447	_KES(ph)APPSLR_
HDAC7	Phosphorylation	S486	-0.969	-0.754	_AQS(ph)SPAAPASLSAPEPASQAR_
ID2	Phosphorylation	S14		-0.139	_NS(ph)LSDHSLGISR_
LIMD1	Phosphorylation	S314	-0.499	-0.597	_S(ph)NSGLGGEVSGVMSKPNVDPQPWFQDGPK_
LIMD1	Phosphorylation	S316	-0.121	-0.506	_SNS(ph)GLGGEVSGVM(ox)SKPNVDPQPWFQDGPK_
LIMD1	Phosphorylation	S384	0.174	0.127	_LS(ph)PTSLVHPVMSTLPELSCK_
MEN1	Ubiquitylation	K8	-1.132	0.088	_AAQK(gl)TLFPLR_
MEN1	Phosphorylation	S218		-0.820	_RES(ph)KPEEPPPPK_
NBR1	Ubiquitylation	K464	-0.807	-2.087	_LSHK(gl)GQQFGPR_
NBR1	Ubiquitylation	K515	-0.852		_TDDLTCQQEETFLLAK(gl)EER_
NBR1	Ubiquitylation	K539	-0.515	-0.635	_QLGEVTEQTEGTAACIPQKAK(gl)_
NBR1	Ubiquitylation	K627	-0.779	-1.425	_ALPDSMVSVK(gl)R_
NBR1	Ubiquitylation	K767	-1.436		_GAEGK(gl)PGVEAGQEPAEAGER_
PTCH1	Ubiquitylation	K904		-0.390	_DKPIDISQLTK(gl)QR_
SEMA4D	Ubiquitylation	K784	0.913	1.205	_SALLIGKK(gl)_
SEMA4D	Ubiquitylation	K857	0.832		_DKPFDVK(gl)CELK_
SKI	Ubiquitylation	K294	-0.126	-0.054	_AYILLSQDYTGK(gl)EEQAR_
SKI	Ubiquitylation	K365	-0.244	-0.390	_TLAGSSNK(gl)SLGCVHPR_
SKI	Phosphorylation	S431		-0.475	_VVS(ph)SPPCAAAVSR_
SKI	Phosphorylation	S432	-0.742	-0.438	_VVSS(ph)PPCAAAVSR_
SKI	Phosphorylation	S480	-1.160	-1.491	_LTVDTPGAPETLAPVAAPEEDKDS(ph)EAEVEVESR_
SMAD3	Ubiquitylation	K13	-0.704		_(ac)SSILPFTPPIVK(gl)R_
SOX2	Phosphorylation	S251	0.157	-0.109	_SEASSS(ph)PPVVTSSSHSR_
SUFU	Ubiquitylation	K303	-0.015		_RLSGK(gl)DTEQIR_
SUFU	Ubiquitylation	K321	-1.917	-1.398	_GLEINSK(gl)PVLPPINPQR_
SUFU	Phosphorylation	S346	0.344	0.498	_KDS(ph)LESDSSTAIIPHELIR_
TOB1	Phosphorylation	T204	-0.200	0.244	_T(ph)SPINLGLNVNDLLK_
TOB1	Phosphorylation	S205	-0.200	0.244	_T(ph)SPINLGLNVNDLLK_
TWIST1	Ubiquitylation	K150		-0.176	_IQTLK(gl)LAAR_
TWIST2	Ubiquitylation	K150		-0.176	_IQTLK(gl)LAAR_
TWSG1	Ubiquitylation	K192		1.435	_ISCESMGASK(gl)YR_