RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
TOP1	3	0.970	-0.880
TOP1	3	0.970	-0.880	0.567	0.872	1.232	0.631	0.425
GSK3B	2	1.020	-0.870				-1.128	1.091
EPHA7	2	2.050	-0.990					0.221
EPHA7	2	2.050	-0.990
NADK	1	0.310	-0.710
UGP2	1	0.950	-0.880
TOLLIP	0	-0.050	0.340	-0.613
TOLLIP	0	0.160	-0.150	-0.613
MAPK3	0
BCKDK	0	0.430	-0.680				-0.128	0.439
COL4A3BP	0	-0.460	0.000
EPHB2	0	-0.630	0.780					0.221
EPHB2	0	-0.630	0.780
CCNH	0	1.480	-0.550
AKT1	0	-0.050	0.700
AKT1	0	0.860	-0.040
PIP5K1A	0	0.290	-0.670			0.831
PIP5K1A	0	1.090	-0.930			0.831
PIP5K1A	0	0.290	-0.670		0.249	-0.303		-1.270
PIP5K1A	0	1.090	-0.930		0.249	-0.303		-1.270
LIMD1	0	0.370	-0.740
PIP4K2A	0	-0.860	0.890			-0.003
CDK5	0	-1.100	1.740	-0.236			1.063	0.312
STAT3	0	0.200	-1.270					0.334
PAK2	0	-0.760	1.040
SHPK	0	1.810	-0.480
MTOR	0	-0.680	0.150	0.757			0.074	0.101

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AKT1	Phosphorylation	S124	0.252	0.311	_SGS(ph)PSDNSGAEEMEVSLAKPK_
AKT1	Phosphorylation	S126	-0.241		_SGSPS(ph)DNSGAEEM(ox)EVSLAK_
AKT1	Ubiquitylation	K301	0.988		_EGIK(gl)DGATMK_
BCKDK	Phosphorylation	S31	1.029	0.951	_S(ph)TSATDTHHVEMAR_
BCKDK	Phosphorylation	T32	1.085	1.343	_ST(ph)SATDTHHVEM(ox)AR_
CCNH	Ubiquitylation	K189	0.418		_K(gl)TADDFLNR_
CDK5	Ubiquitylation	K56	0.606	0.237	_EICLLK(gl)ELK_
COL4A3BP	Phosphorylation	S377	-0.986	-1.717	_SSS(ph)MSSIDLVSASDDVHR_
EPHA7	Ubiquitylation	K180		0.633	_EIGPLSKK(gl)_
EPHA7	Ubiquitylation	K272		0.520	_AGYQQK(gl)GDTCEPCGR_
EPHA7	Ubiquitylation	K578	-0.752	-0.618	_QSPEDVYFSK(gl)SEQLKPLK_
EPHA7	Ubiquitylation	K583	0.445	0.124	_SEQLK(gl)PLK_
EPHA7	Ubiquitylation	K606	-0.162		_FPGTK(gl)TYIDPETYEDPNR_
EPHA7	Ubiquitylation	K617	0.339		_QK(gl)VIGAGEFGEVYK_
EPHA7	Ubiquitylation	K634	0.732	1.340	_ELDASCIK(gl)IER_
EPHA7	Ubiquitylation	K649	-1.219		_TLK(gl)AGYTEK_
EPHA7	Ubiquitylation	K657	0.533		_LKLPGK(gl)R_
EPHA7	Ubiquitylation	K665		3.196	_DVAVAIK(gl)TLK_
EPHA7	Ubiquitylation	K797	-1.229	-0.459	_VIEDDPEAVYTTTGGK(gl)IPVR_
EPHA7	Phosphorylation	S897		0.000	_LPS(ph)TSGSEGVPFR_
EPHA7	Phosphorylation	T898	-0.329	0.424	_LPST(ph)SGSEGVPFR_
EPHA7	Phosphorylation	S912		-0.413	_TPLGTCSRPIS(ph)PLLDQNTPDFTTFCSVGEWLQAIK_
EPHB2	Ubiquitylation	K578	-0.752	-0.618	_QSPEDVYFSK(gl)SEQLKPLK_
EPHB2	Ubiquitylation	K583	0.445	0.124	_SEQLK(gl)PLK_
EPHB2	Ubiquitylation	K617	0.339		_QK(gl)VIGAGEFGEVYK_
EPHB2	Ubiquitylation	K649	-1.219		_TLK(gl)AGYTEK_
EPHB2	Phosphorylation	S776	-0.147	-0.171	_FLEDDTS(ph)DPTYTSALGGK_
EPHB2	Phosphorylation	S897		0.000	_LPS(ph)TSGSEGVPFR_
EPHB2	Phosphorylation	T898	-0.329	0.424	_LPST(ph)SGSEGVPFR_
GSK3B	Phosphorylation	S9	-0.483	0.010	_TTS(ph)FAESCKPVQQPSAFGSMK_
GSK3B	Ubiquitylation	K85		-0.204	_LCDSGELVAIK(gl)K_
GSK3B	Ubiquitylation	K86		-0.204	_LCDSGELVAIK(gl)K_
GSK3B	Phosphorylation	S215	0.296	0.477	_GEPNVS(ph)YICSR_
GSK3B	Phosphorylation	Y216	0.356	0.376	_GEPNVSY(ph)ICSR_
GSK3B	Phosphorylation	T390	2.800	2.527	_IQAAAST(ph)PTNATAASDANTGDR_
LIMD1	Phosphorylation	S314	-0.499	-0.597	_S(ph)NSGLGGEVSGVMSKPNVDPQPWFQDGPK_
LIMD1	Phosphorylation	S316	-0.121	-0.506	_SNS(ph)GLGGEVSGVM(ox)SKPNVDPQPWFQDGPK_
LIMD1	Phosphorylation	S384	0.174	0.127	_LS(ph)PTSLVHPVMSTLPELSCK_
MAPK3	Phosphorylation	Y204	-0.807	-2.487	_IADPEHDHTGFLTEY(ph)VATR_
MAPK3	Ubiquitylation	K289		-0.608	_NYLQSLPSKTK(gl)_
MTOR	Ubiquitylation	K309	-0.762	0.065	_DLMGFGTK(gl)PR_
MTOR	Ubiquitylation	K1257	-1.167	-0.901	_SGQGDALASGPVETGPMKK(gl)_
MTOR	Ubiquitylation	K1395		-1.255	_AYAK(gl)ALHYK_
MTOR	Ubiquitylation	K2066		-1.004	_GPQTLK(gl)ETSFNQAYGR_
MTOR	Ubiquitylation	K2166		-1.304	_IQSIAPSLQVITSK(gl)QRPR_
MTOR	Phosphorylation	T2471		0.329	_KT(ph)GTTVPESIHSFIGDGLVKPEALNK_
NADK	Phosphorylation	S64	2.389		_TRS(ph)LHGPCPVTTFGPK_
PAK2	Phosphorylation	S2	-1.228	-0.902	_(ac)S(ph)DNGELEDKPPAPPVR_
PAK2	Ubiquitylation	K136	1.213		_FYDSNTVK(gl)QK_
PAK2	Phosphorylation	S141	-0.294	-0.321	_YLS(ph)FTPPEK_
PAK2	Ubiquitylation	K370	-0.565		_DIK(gl)SDNVLLGMEGSVK_
PIP4K2A	Ubiquitylation	K395	0.518	-0.779	_HGAGAEISTVNPEQYSK(gl)R_
PIP5K1A	Ubiquitylation	K78		0.181	_SVDSSGETTYK(gl)K_
PIP5K1A	Ubiquitylation	K79		0.181	_SVDSSGETTYK(gl)K_
PIP5K1A	Ubiquitylation	K103	-0.225	-2.556	_GAIQLGITHTVGSLSTK(gl)PER_
PIP5K1A	Ubiquitylation	K223	-0.376		_EK(gl)PLPTFK_
PIP5K1A	Phosphorylation	S458		-1.008	_KIPLKPS(ph)PSK_
PIP5K1A	Phosphorylation	S460		-1.118	_KIPLKPSPS(ph)K_
PIP5K1A	Phosphorylation	S475	-0.061	0.135	_RAGS(ph)SGNSCITYQPSVSGEHK_
PIP5K1A	Phosphorylation	S476	0.621		_RAGSS(ph)GNSCITYQPSVSGEHK_
SHPK	Ubiquitylation	K441	-0.416	-0.939	_NDVLK(gl)QEVQR_
STAT3	Ubiquitylation	K177	0.957		_VVENLQDDFDFNYK(gl)TLK_
STAT3	Ubiquitylation	K180	1.179		_TLK(gl)SQGDMQDLNGNNQSVTR_
STAT3	Ubiquitylation	K244	0.262		_TLTDEELADWK(gl)R_
STAT3	Phosphorylation	T714		-0.338	_FICVT(ph)PTTCSNTIDLPMS(ph)PR_
STAT3	Phosphorylation	S727	-0.079	0.156	_FICVTPTTCSNTIDLPMS(ph)PR_
TOLLIP	Ubiquitylation	K94	-0.411	0.859	_LNITVVQAK(gl)_
TOLLIP	Ubiquitylation	K97		0.276	_LAK(gl)NYGMTR_
TOLLIP	Ubiquitylation	K177	0.510		_QGK(gl)VEDKWYSLSGR_
TOP1	Phosphorylation	S10	0.973	1.937	_(ac)SGDHLHNDS(ph)QIEADFR_
TOP1	Ubiquitylation	K245	2.277		_FYYDGK(gl)VMK_
TOP1	Ubiquitylation	K252		1.900	_LSPK(gl)AEEVATFFAK_
TOP1	Ubiquitylation	K391	0.019		_DAK(gl)VPSPPPGHK_
TOP1	Ubiquitylation	K545	2.178		_YYNKVPVEK(gl)R_
TOP1	Ubiquitylation	K642	2.317		_TFEK(gl)SMMNLQTK_
UGP2	Phosphorylation	S2	0.936	1.976	_(ac)S(ph)QDGASQFQEVIR_