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Query: PATL1

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
PATL1 0 -0.228 1.310 -0.500

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
PATL1 Phosphorylation T178 -0.080 _RST(ph)SPIIGSPPVR_
PATL1 Phosphorylation S179 -0.148 -0.186 _RSTS(ph)PIIGSPPVR_
PATL1 Phosphorylation S184 -0.543 -0.522 _STS(ph)PIIGS(ph)PPVR_

Background Information for PATL1:


Pubmed-PATL1 »
Uniprot-PATL1 »
Biogrid-PATL1 »
ProteomicsDB-PATL1 »

Tumorportal-PATL1 »
COSMIC-PATL1 »
GenomeRNAi-PATL1 »
Genecards-PATL1


Protein-protein Interactions for PATL1
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait CENPE Cat. description Hein, Mann, Cell 2015
Category members IP bait DCP1A Cat. description Hein, Mann, Cell 2015
Category members IP bait EDC4 Cat. description Hein, Mann, Cell 2015
Category members IP bait LSM5 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait LSM6 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait NAGK Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait PATL1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait QPRT Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in PATL1
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Topo_II-assoc_PAT1 IPR019167 0


Protein complexes (CORUM database) featuring PATL1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring PATL1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members Pathway Pathway_771 REACTOME_METABOLISM_OF_RNA 0 INF
Category members Pathway Pathway_773 REACTOME_METABOLISM_OF_MRNA 0 INF
Category members GO Category GO:0003723 RNA binding Database INF
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005829 cytosol Database INF
Category members GO Category GO:0010467 gene expression Database INF
Category members GO Category GO:0016070 RNA metabolic process Database INF
Category members GO Category GO:0016071 mRNA metabolic process Database INF
Category members GO Category GO:0016607 nuclear speck Database 4.84
Category members GO Category GO:0016605 PML body Database 1.41
Category members GO Category GO:0043231 intracellular membrane-bounded organelle Database 0.43
Category members Pathway Pathway_310 KEGG_RNA_DEGRADATION 0 0.26
Category members GO Category GO:0043928 exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay Database 0.21
Category members GO Category GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay Database 0.17
Category members Pathway Pathway_842 REACTOME_DEADENYLATION_DEPENDENT_MRNA_DECAY 0 0.1
Category members GO Category GO:0000932 cytoplasmic mRNA processing body Database 0.08
Category members GO Category GO:0033962 cytoplasmic mRNA processing body assembly Database 0.07
Category members Pathway Pathway_843 REACTOME_MRNA_DECAY_BY_5_TO_3_EXORIBONUCLEASE 0 0
Category members GO Category GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA Database 0
Category members GO Category GO:0008266 poly(U) RNA binding Database 0
Category members GO Category GO:0030014 CCR4-NOT complex Database 0
Category members GO Category GO:0034046 poly(G) RNA binding Database 0


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