RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
CAT	2	2.260	-1.180				1.895	-0.238
ABCD3	1	0.430	-0.210				0.177	0.367
ABCD3	1	0.430	-0.210
PEX1	1	-0.360	0.060				0.486	0.514
HSD17B4	1	0.150	-0.410	0.662	1.589		0.132	0.014
PEX14	1	-1.140	1.100				-0.395	0.423
MGST1	0	-0.160	0.420				-0.611
AGPS	0	1.630	-0.810	-0.249		-1.158	0.206	0.190
PEX3	0	-0.020	-0.330				0.666	0.365
FAR2	0	0.560	0.000
ACSL4	0	1.120	-0.740	-0.154		-1.054	0.236	0.117
MAVS	0	1.610	-0.380				-1.056	-0.630
SLC25A17	0	0.570	-0.020				1.280	0.162
ACBD5	0	-0.110	0.360
ACBD5	0	-0.110	0.360				0.678	0.349
DHRS7B	0	-1.210	1.570				0.740	0.273
HMGCR	0	0.240	0.010
TTC1	0	0.360	-0.600
GNPAT	0	0.120	0.650				-1.085	0.016
GNPAT	0	0.120	0.650
PEX16	0	0.030	0.080				-1.135	0.469
ACSL3	0	-1.350	2.060	0.010	0.425	-0.116	0.343	0.188
CNOT1	0			0.579	-0.249		-0.264	-0.019
MAP2K2	0	-0.610	0.080
MAP2K2	0	-0.610	0.080
PNPLA8	0	0.270	-0.360	-0.075	0.032	-0.336	0.525	0.443
ATAD1	0	-1.600	2.330				-0.184	-0.183
PEX5	0	-0.220	0.060	-0.723
SLC27A2	0	0.080	-0.710				0.200	1.382
ACSL1	0	-1.550	2.430	-0.319			0.348	-0.094
ACSL1	0	-1.090	1.870	-0.319			0.348	-0.094
DHRS4	0	0.180	-0.130	-1.439
DHRS4	0	0.450	-0.560	-1.439
PEX10	0	0.420	-0.650
ACOX1	0	0.460	-0.300
PEX19	0	1.640	-1.220				-3.891	-2.630
ACSL6	0	-1.270	2.480	-0.319			0.348	-0.094
ACSL6	0	-0.630	0.500	-0.319			0.348	-0.094
RAB8B	0	-0.070	0.130	-0.051			0.529	0.549
RAB8B	0	-0.070	0.130		1.641	-1.484	0.560	0.491
RAB8B	0	-0.070	0.130				-0.216
PXMP2	0	1.420	-0.710				1.409	0.762
IMPDH2	0	-1.000	1.830	0.860	0.260	0.421	1.006	0.467
FAR1	0	1.970	-0.550	-1.201			-0.566	-0.107

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ABCD3	Ubiquitylation	K6	-0.659	-0.529	_AAFSK(gl)YLTAR_
ABCD3	Ubiquitylation	K39	-1.169		_ALGLHGKK(gl)_
ABCD3	Ubiquitylation	K260	1.051	0.695	_MTITEQK(gl)YEGEYR_
ABCD3	Ubiquitylation	K533	2.395	-0.758	_DQVIYPDGREDQK(gl)R_
ACBD5	Phosphorylation	T170	-0.452	-0.167	_SSDITSDLGNVLTST(ph)PNAK_
ACBD5	Ubiquitylation	K174	-0.428		_SSDITSDLGNVLTSTPNAK(gl)TVNGK_
ACBD5	Phosphorylation	S185	0.301	0.460	_AESSDS(ph)GAES(ph)EEEEAQEEVK_
ACBD5	Phosphorylation	S189	0.301	0.460	_AESSDS(ph)GAES(ph)EEEEAQEEVK_
ACBD5	Ubiquitylation	K256	-0.844		_STEEVK(gl)PIDENLGQTGK_
ACBD5	Phosphorylation	S407		0.502	_MQHLS(ph)EGTK_
ACBD5	Ubiquitylation	K411	-0.376	0.365	_M(ox)QHLSEGTK(gl)GR_
ACBD5	Ubiquitylation	K458		-0.346	_LQK(gl)LETLTALQAK_
ACOX1	Phosphorylation	S26	-0.372		_DSASFNPELLTHILDGS(ph)PEK_
ACOX1	Ubiquitylation	K122		-0.820	_EK(gl)WLLSSK_
ACSL1	Ubiquitylation	K386		-0.432	_IFGQANTTLK(gl)R_
ACSL1	Ubiquitylation	K521		-2.563	_GPNVFQGYLK(gl)DPAK_
ACSL3	Ubiquitylation	K8		0.466	_(ac)MNNHVSSK(gl)PSTMK_
ACSL3	Ubiquitylation	K63	-0.973	-1.522	_AKPVNSK(gl)PDSAYR_
ACSL4	Ubiquitylation	K49	-1.745		_AK(gl)PTSDKPGSPYR_
ACSL4	Ubiquitylation	K54	-1.457		_AKPTSDK(gl)PGSPYR_
ACSL4	Ubiquitylation	K354	0.109	0.988	_IGYSSPLTLSDQSSK(gl)IK_
ACSL4	Ubiquitylation	K356	0.153	0.800	_IGYSSPLTLSDQSSKIK(gl)_
ACSL4	Ubiquitylation	K500	-1.017	-0.639	_LK(gl)DWQEGGYTINDKPNPR_
ACSL4	Ubiquitylation	K621	0.455	0.184	_SDQSYVISFVVPNQK(gl)R_
ACSL4	Ubiquitylation	K661	0.291	0.519	_EAANAM(ox)K(gl)LER_
ACSL4	Ubiquitylation	K670	-0.058	-0.343	_FEIPIK(gl)VR_
ACSL4	Ubiquitylation	K702	0.575		_NHYLK(gl)DIER_
ACSL6	Ubiquitylation	K386		-0.432	_IFGQANTTLK(gl)R_
ACSL6	Ubiquitylation	K521		-2.563	_GPNVFQGYLK(gl)DPAK_
AGPS	Phosphorylation	S65	-0.566	-0.723	_AAS(ph)AATAAPTATPAAQESGTIPK_
ATAD1	Ubiquitylation	K65		-0.245	_QIGVK(gl)NVK_
ATAD1	Ubiquitylation	K144		0.074	_TLIAK(gl)ATAK_
ATAD1	Ubiquitylation	K263	0.156	-0.080	_FHINQPALK(gl)QR_
ATAD1	Ubiquitylation	K274	0.570	0.005	_LILK(gl)NENVDR_
CNOT1	Phosphorylation	S1061	0.555	0.326	_TVTVTRPTGVS(ph)FKK_
CNOT1	Ubiquitylation	K1064	-0.495		_TVTVTRPTGVSFKK(gl)_
CNOT1	Ubiquitylation	K1708	0.686		_AYGSPWCNK(gl)QITR_
CNOT1	Ubiquitylation	K2185	-0.010	0.228	_DLDSYLK(gl)TR_
DHRS7B	Ubiquitylation	K183	-1.521	-0.803	_ALLPSMIK(gl)R_
FAR1	Ubiquitylation	K29		0.817	_VLLEK(gl)LLR_
FAR2	Ubiquitylation	K379		0.174	_MTK(gl)LMNR_
GNPAT	Ubiquitylation	K62	0.246	0.762	_HVSDLK(gl)FAMK_
GNPAT	Ubiquitylation	K159		-0.813	_VCVNEEGIQK(gl)LQR_
GNPAT	Ubiquitylation	K264		-1.065	_SAK(gl)TLTPK_
GNPAT	Ubiquitylation	K325	-1.149	-0.511	_ESTTGLLK(gl)AR_
HMGCR	Ubiquitylation	K142		-0.522	_ASTLAK(gl)FALSSNSQDEVR_
HMGCR	Ubiquitylation	K248	-3.854	-2.107	_VLEEEENK(gl)PNPVTQR_
HMGCR	Ubiquitylation	K299	-1.680	-0.460	_VSLGLDENVSK(gl)R_
HMGCR	Ubiquitylation	K363		-1.750	_NPITSPVVTQKK(gl)_
HMGCR	Ubiquitylation	K381		-0.848	_NNQK(gl)CDSVEEETGINR_
HMGCR	Ubiquitylation	K401		-3.050	_KVEVIK(gl)PLVAETDTPNR_
HMGCR	Ubiquitylation	K502		-1.382	_K(gl)LSEPSSLQYLPYR_
HMGCR	Ubiquitylation	K633		-1.104	_LQK(gl)LHTSIAGR_
HMGCR	Ubiquitylation	K662		-1.291	_SGDAMGMNMISK(gl)GTEK_
HMGCR	Ubiquitylation	K704		-1.716	_GK(gl)SVVCEAVIPAK(gl)VVR_
HMGCR	Ubiquitylation	K715		-1.982	_SVVCEAVIPAK(gl)VVR_
HMGCR	Ubiquitylation	K873		-1.345	_SK(gl)INLQDLQGACTKK_
HMGCR	Ubiquitylation	K885		-1.690	_SKINLQDLQGACTK(gl)K_
HMGCR	Ubiquitylation	K886		-1.325	_INLQDLQGACTKK(gl)_
HSD17B4	Ubiquitylation	K68	-0.723		_GGK(gl)AVANYDSVEEGEK_
IMPDH2	Ubiquitylation	K124	0.058		_YEQGFITDPVVLSPK(gl)DR_
IMPDH2	Ubiquitylation	K134	0.709	0.285	_VRDVFEAK(gl)AR_
IMPDH2	Phosphorylation	S160	0.758	0.744	_LVGIISS(ph)R_
IMPDH2	Ubiquitylation	K208	-0.482	-0.007	_GK(gl)LPIVNEDDELVAIIAR_
IMPDH2	Ubiquitylation	K293	0.119		_DK(gl)YPNLQVIGGNVVTAAQAK_
IMPDH2	Phosphorylation	S416	0.362	0.652	_GMGS(ph)LDAMDK_
IMPDH2	Ubiquitylation	K422	1.114	0.582	_GMGSLDAMDK(gl)HLSSQNR_
IMPDH2	Ubiquitylation	K450	0.313	0.467	_VAQGVSGAVQDK(gl)GSIHK_
MAP2K2	Phosphorylation	S23	0.873	0.258	_RKPVLPALTINPTIAEGPS(ph)PTSEGASEANLVDLQK_
MAP2K2	Phosphorylation	T25		0.439	_RKPVLPALTINPTIAEGPSPT(ph)SEGASEANLVDLQK_
MAP2K2	Ubiquitylation	K192	-0.205	-0.241	_DVK(gl)PSNILVNSR_
MAP2K2	Phosphorylation	S293		-0.361	_ELEAIFGRPVVDGEEGEPHS(ph)ISPR_
MAP2K2	Phosphorylation	S295	-0.234	0.026	_ELEAIFGRPVVDGEEGEPHSIS(ph)PR_
MAP2K2	Phosphorylation	T394	0.570	0.158	_LNQPGT(ph)PTR_
MAVS	Phosphorylation	S152	0.146	-0.466	_EKEPSYPMPVQETQAPES(ph)PGENSEQALQTLSPR_
MAVS	Phosphorylation	S165		-0.888	_EKEPSYPMPVQETQAPESPGENSEQALQTLS(ph)PR_
MAVS	Phosphorylation	S222	1.349	1.006	_GPVS(ph)PSVSFQPLAR_
MAVS	Ubiquitylation	K362	0.082		_AGMVPSK(gl)VPTSMVLTK_
PEX1	Ubiquitylation	K349	0.125		_TK(gl)QNVLSPEK_
PEX1	Ubiquitylation	K368	0.607	0.123	_QMSEPLDQK(gl)K_
PEX1	Ubiquitylation	K369		-0.129	_QMSEPLDQKK(gl)_
PEX1	Phosphorylation	T1179	2.277	0.592	_T(ph)ASQEGCQELTQEQR_
PEX1	Phosphorylation	S1181	1.820	1.458	_TAS(ph)QEGCQELTQEQR_
PEX1	Phosphorylation	S1211	0.326	-0.091	_SQS(ph)GEDESMNQPGPIK_
PEX10	Ubiquitylation	K17		-0.444	_AAQK(gl)DEYYR_
PEX14	Phosphorylation	S232		1.626	_RQFPPS(ph)PSAPK_
PEX14	Phosphorylation	S234		3.951	_RQFPPSPS(ph)APK_
PEX19	Phosphorylation	S35		-1.246	_AKPS(ph)PAPPSTTTAPDASGPQK_
PEX19	Ubiquitylation	K52	-2.504	-2.347	_AKPSPAPPSTTTAPDASGPQK(gl)R_
PEX19	Ubiquitylation	K60	-0.279	0.300	_SPGDTAK(gl)DALFASQEK_
PEX19	Phosphorylation	S147	-0.230	0.253	_NATDLQNSS(ph)MSEEELTK_
PEX3	Ubiquitylation	K262	0.335	0.168	_DITTIK(gl)LLNETR_
PEX5	Ubiquitylation	K238	-0.622		_LANSEFLK(gl)FVR_
RAB8B	Ubiquitylation	K102	-0.105		_SFENISK(gl)WLR_
RAB8B	Ubiquitylation	K163		0.199	_LLLGNK(gl)CDMEAK_
RAB8B	Ubiquitylation	K174	-0.188		_VQK(gl)EQADKLAR_
RAB8B	Ubiquitylation	K213	-0.059	0.420	_DILLK(gl)SGGR_
SLC25A17	Ubiquitylation	K42		0.106	_LQVDEK(gl)R_
SLC25A17	Ubiquitylation	K44	-0.499		_LQVDEKRK(gl)_
SLC25A17	Ubiquitylation	K130		-0.564	_LK(gl)LQGAK_
SLC25A17	Ubiquitylation	K135		-0.478	_LQGAK(gl)FR_
SLC27A2	Ubiquitylation	K62		1.069	_AFLEK(gl)AR_
SLC27A2	Ubiquitylation	K390		-0.901	_VNYLQKK(gl)_
SLC27A2	Ubiquitylation	K419	-0.252	0.124	_VPK(gl)GEVGLLVCK_
TTC1	Phosphorylation	T21		0.203	_VT(ph)DTQEAECAGPPVPDPK_
TTC1	Phosphorylation	T23		0.037	_VTDT(ph)QEAECAGPPVPDPK_
TTC1	Ubiquitylation	K152	-0.493	0.277	_ALEMCPSCFQK(gl)ER_
TTC1	Ubiquitylation	K180		0.919	_EMAINDCSK(gl)AIQLNPSYIR_
TTC1	Ubiquitylation	K244	-0.337	0.833	_LK(gl)EEMLGK_
TTC1	Ubiquitylation	K250	0.081		_LKEEMLGK(gl)LK_
TTC1	Ubiquitylation	K252	-0.469		_LKEEMLGKLK(gl)_