RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
PDIA3	2	-2.160	3.830	0.411	2.714	-0.864	0.952	0.794
PDIA3	2	-2.160	3.830	0.189	2.142	-1.800
SEC23A	1	-1.970	3.860	0.314			0.139	-0.515
ALG13	1	0.890	-1.050	1.053	0.029	0.494
ALG13	1	3.500	-1.400	1.053	0.029	0.494
ALG5	1	-1.110	2.210				-0.333	-0.605
PRKCSH	1	0.550	0.060				0.459	0.419
ALG10	1	0.210	-0.060
ALG10	1	2.140	-1.170
MGAT5	1	-2.020	2.970
DPM1	0	0.070	-0.350	-0.276			0.551	0.359
PGM3	0	-0.810	1.250
PGM3	0	-0.810	1.250	0.589
ALG1	0	-0.690	1.460				0.385	0.247
LMAN1	0						0.562	0.393
LMAN1	0
ALG6	0	-0.300	0.360				0.297	0.412
EDEM2	0	-0.410	0.000
EDEM2	0	-0.410	0.000
GANAB	0	-1.570	1.920	0.976	1.372	-0.855	0.380	0.462
GANAB	0	-1.570	1.920	-0.067
PMM1	0
UGGT2	0	-0.280	0.250					0.949
TUSC3	0	0.700	-0.570
MLEC	0						0.390	0.137
MAN1A1	0	1.510	-0.660
MAN2A1	0	-0.240	0.680				0.273	0.902
MOGS	0	0.820	-0.440	-0.759	-0.292	-0.523	0.219	0.072
EDEM3	0	-0.320	0.890
RPN2	0	1.000	-0.610
RPN2	0	1.000	-0.610	0.994
ALG2	0	0.490	-0.760				0.103	0.159
CANX	0	0.090	-0.410	0.234	-0.021	-1.207	-0.098	-0.313
DAD1	0	0.340	0.170	0.089			0.771	1.070
GFPT2	0	-0.710	1.260
STT3A	0	0.170	-0.050				0.328	0.301
UGGT1	0	0.180	-0.910	0.129	-1.115	-0.232	0.607	0.857
PREB	0	0.820	-0.890				-0.364	-0.232
SEC31A	0	1.690	-1.010	-0.161			-0.171	0.128
SEC24B	0	-0.430	0.680				-0.093	-0.387
GMPPA	0	1.140	-0.940
SAR1B	0	-1.030	1.290	-0.088			0.687	0.548
SEC13	0	-0.290	0.170	1.171	0.795	0.493	-0.623	0.018
RPN1	0	0.940	0.740	0.262	0.018	-0.781	0.557	0.400
RFT1	0	-0.670	1.210				0.749	0.436
RFT1	0	-0.490	1.160				0.749	0.436
DOLPP1	0	1.090	-0.180				0.416	0.345
MGAT2	0	-0.180	0.700				-0.347	-0.098
DPAGT1	0	0.010	-0.380
GMPPB	0	-1.100	1.180	-0.526
ALG10B	0
SEC24C	0	0.420	-0.360					-0.393
MAN1B1	0	-1.220	1.640
MPI	0	0.190	0.220
DPM3	0	0.350	-0.390				0.453	0.384
CALR	0	-1.300	2.220				0.480	0.054
ALG12	0	0.450	-0.390
MAN1A2	0	0.780	-0.820				0.506
ALG3	0	-0.030	-0.400				0.651	0.468
DDOST	0	1.280	-0.390		0.151	-0.462	0.509	0.295

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ALG10	Ubiquitylation	K123		1.464	_NK(gl)AASSIQR_
ALG10B	Ubiquitylation	K123		1.464	_NK(gl)AASSIQR_
ALG12	Ubiquitylation	K337		0.016	_GCSYLLNNYKK(gl)_
ALG13	Ubiquitylation	K68		0.277	_YKDSLK(gl)EDIQK_
ALG13	Ubiquitylation	K94		-0.565	_GK(gl)PLVVVINEK_
ALG13	Ubiquitylation	K137		-0.814	_VLTCPGQAK(gl)SIASAPGK_
ALG13	Phosphorylation	S216		1.020	_S(ph)LNEASMDEYLGSLGLFR_
ALG13	Ubiquitylation	K238		-0.752	_KLTAK(gl)DASCLFR_
ALG13	Ubiquitylation	K263		0.896	_K(gl)ACVSYMR_
ALG13	Ubiquitylation	K386		-0.264	_TAIK(gl)LFR_
ALG13	Ubiquitylation	K411		-0.507	_NNAVTGSEDAHTDYK(gl)SSNQNR_
ALG13	Ubiquitylation	K458		-0.539	_VLK(gl)ALDPEIYR_
ALG13	Ubiquitylation	K482		0.513	_ELQK(gl)SDYMEYAGR_
ALG13	Ubiquitylation	K683		-0.785	_VDFYPGPGK(gl)R_
ALG3	Phosphorylation	S11	1.253	0.455	_GRS(ph)GSAAQAEGLCK_
ALG3	Phosphorylation	S13	1.162	1.021	_SGS(ph)AAQAEGLCK_
ALG3	Ubiquitylation	K22		0.682	_SGSAAQAEGLCK(gl)QWLQR_
ALG5	Ubiquitylation	K139	0.216	1.578	_VITLVK(gl)NR_
CALR	Ubiquitylation	K48		0.703	_SDFGK(gl)FVLSSGK_
CALR	Ubiquitylation	K153	-0.924	0.619	_GK(gl)NVLINK_
CALR	Ubiquitylation	K159	-1.004	0.381	_NVLINK(gl)DIR_
CANX	Ubiquitylation	K96	-1.324		_VTYK(gl)APVPTGEVYFADSFDR_
CANX	Ubiquitylation	K122	0.021	0.828	_GTLSGWILSK(gl)AK_
CANX	Ubiquitylation	K124	-0.479		_GTLSGWILSKAK(gl)_
CANX	Ubiquitylation	K153	-0.762		_LPGDK(gl)GLVLMSR_
CANX	Ubiquitylation	K252	0.015		_TGIYEEK(gl)HAK_
CANX	Ubiquitylation	K268		1.422	_TYFTDK(gl)K_
CANX	Ubiquitylation	K415	-1.726		_CESAPGCGVWQRPVIDNPNYK(gl)GK_
CANX	Ubiquitylation	K417	-0.679		_PVIDNPNYKGK(gl)_
CANX	Ubiquitylation	K494	-0.002	1.403	_IVDDWANDGWGLKK(gl)_
CANX	Phosphorylation	S589	0.479	0.421	_S(ph)DAEEDGGTVSQEEEDR_
CANX	Phosphorylation	T597	0.469	0.188	_SDAEEDGGT(ph)VSQEEEDRKPK_
CANX	Phosphorylation	S599	0.395	0.352	_SDAEEDGGTVS(ph)QEEEDR_
CANX	Phosphorylation	S618	0.442	0.320	_AEEDEILNRS(ph)PR_
DDOST	Ubiquitylation	K189		-0.337	_APTIVGK(gl)SSLNPILFR_
DOLPP1	Ubiquitylation	K236		0.232	_KLGTK(gl)LQ_
DPAGT1	Ubiquitylation	K48	-0.796	0.883	_LCGQDLNK(gl)TSR_
DPAGT1	Ubiquitylation	K310		0.397	_LNIK(gl)TGK_
DPAGT1	Ubiquitylation	K313		0.255	_TGK(gl)LEMSYSK_
DPAGT1	Ubiquitylation	K320		0.794	_LEMSYSK(gl)FK_
DPAGT1	Ubiquitylation	K322		0.794	_LEMSYSK(gl)FK_
DPM1	Phosphorylation	S3	-0.133	1.347	_(ac)AS(ph)LEVSRS(ph)PR_
DPM1	Phosphorylation	S7	0.079	0.135	_(ac)ASLEVS(ph)RSPRR_
DPM1	Phosphorylation	S9	0.253	0.027	_(ac)AS(ph)LEVSRS(ph)PR_
EDEM2	Ubiquitylation	K389		-0.847	_SLPLLLK(gl)_
EDEM2	Ubiquitylation	K509		-0.471	_EFYSLK(gl)R_
EDEM3	Ubiquitylation	K435		-1.055	_TLIENLNK(gl)YAR_
EDEM3	Ubiquitylation	K447		0.123	_VPCGFAAMK(gl)DVR_
GANAB	Ubiquitylation	K99	0.296	1.368	_TCEESSFCK(gl)R_
GANAB	Ubiquitylation	K320	-0.200	0.127	_LK(gl)VTEGGEPYR_
GANAB	Ubiquitylation	K542		0.522	_NLGLYVK(gl)TR_
GFPT2	Phosphorylation	S244	1.156	0.590	_RLDS(ph)SACLHAVGDK_
GMPPA	Ubiquitylation	K13		-0.301	_AVILIGGPQK(gl)GTR_
GMPPA	Ubiquitylation	K376		0.025	_MDSESLFK(gl)DGK_
LMAN1	Ubiquitylation	K96		0.601	_GSVWTK(gl)TK_
LMAN1	Ubiquitylation	K346	-0.443		_IHLEIK(gl)QLNR_
LMAN1	Ubiquitylation	K372	1.187	0.921	_YVSSLTEEISK(gl)R_
LMAN1	Ubiquitylation	K407		0.987	_QVNEMK(gl)NSMSETVR_
LMAN1	Ubiquitylation	K463		-0.810	_NMPSNEK(gl)PK_
LMAN1	Ubiquitylation	K465		-0.810	_NMPSNEK(gl)PK_
MAN1A1	Ubiquitylation	K518		-0.188	_TFMK(gl)LGPEAFR_
MAN1B1	Ubiquitylation	K562		-1.233	_DVEVK(gl)PADR_
MAN2A1	Ubiquitylation	K638		-0.755	_SQDSLPQK(gl)NIIR_
MGAT5	Ubiquitylation	K55		0.783	_EQILDLSK(gl)R_
MPI	Ubiquitylation	K60	0.177	-0.041	_GDAK(gl)ILDNR_
PDIA3	Ubiquitylation	K75		-0.105	_LK(gl)GIVPLAK_
PDIA3	Ubiquitylation	K94	-0.012	0.658	_VDCTANTNTCNK(gl)YGVSGYPTLK_
PDIA3	Ubiquitylation	K130		0.775	_TADGIVSHLKK(gl)_
PDIA3	Ubiquitylation	K226	-0.163	0.525	_TVAYTEQK(gl)MTSGK_
PDIA3	Ubiquitylation	K362	-0.242		_FLQDYFDGNLK(gl)R_
PGM3	Phosphorylation	T90	0.252	0.400	_STIGVMVT(ph)ASHNPEEDNGVK_
PGM3	Phosphorylation	S92	0.330	0.265	_STIGVMVTAS(ph)HNPEEDNGVK_
PGM3	Ubiquitylation	K205		0.083	_YGK(gl)ATIEGYYQK_
PGM3	Ubiquitylation	K214		-0.055	_ATIEGYYQK(gl)LSK_
PGM3	Ubiquitylation	K224		-0.365	_AFVELTK(gl)QASCSGDEYR_
PGM3	Ubiquitylation	K237	-0.071	-1.543	_SLK(gl)VDCANGIGALK_
PGM3	Ubiquitylation	K378		-0.453	_VPVYCTK(gl)TGVK_
PMM1	Ubiquitylation	K30	-0.139		_QK(gl)IDPEVAAFLQK_
PMM1	Ubiquitylation	K177		-0.186	_TEFAGK(gl)GLR_
PREB	Ubiquitylation	K218		-0.621	_DLK(gl)ASVWQK_
PREB	Ubiquitylation	K272		-1.012	_LFTVQIPHK(gl)R_
PRKCSH	Ubiquitylation	K383	1.564	0.883	_NK(gl)FEEAER_
RFT1	Ubiquitylation	K241		-0.090	_NGAFINWKEAK(gl)_
RPN1	Ubiquitylation	K187	0.225	0.149	_NVESYTK(gl)LGNPTR_
RPN1	Ubiquitylation	K258		-0.934	_HTGAVLK(gl)GPFSR_
RPN1	Ubiquitylation	K517	0.437	0.831	_DISTLNSGKK(gl)_
RPN1	Ubiquitylation	K538	0.059	0.574	_LK(gl)TEGSDLCDRVSEMQK_
RPN1	Ubiquitylation	K553	-0.570	0.943	_VSEMQK(gl)LDAQVK_
RPN1	Ubiquitylation	K564	-1.249		_ELVLK(gl)SAVEAER_
RPN1	Ubiquitylation	K576	-0.148		_LVAGK(gl)LKK_
RPN1	Ubiquitylation	K578	-0.355		_LK(gl)KDTYIENEK_
RPN1	Ubiquitylation	K587	-1.128		_DTYIENEK(gl)LISGK_
RPN2	Ubiquitylation	K70		1.069	_K(gl)ACTYIR_
RPN2	Ubiquitylation	K403		-0.045	_VTYPAKAK(gl)_
RPN2	Ubiquitylation	K627	-0.931	0.454	_MLAQQAVK(gl)R_
SEC24B	Phosphorylation	S1254		-0.049	_DSRPLS(ph)PILHIVKDESPAK_
SEC24C	Ubiquitylation	K956	-2.127	-1.632	_LLPLTK(gl)SPVESTTEPPAVR_
SEC31A	Ubiquitylation	K460	0.843	1.346	_SDQLQQAVQSQGFINYCQK(gl)K_
SEC31A	Ubiquitylation	K461	0.843	1.346	_SDQLQQAVQSQGFINYCQK(gl)K_
SEC31A	Phosphorylation	S527	-0.287	0.538	_DSDQVAQS(ph)DGEESPAAEEQLLGEHIK_
SEC31A	Phosphorylation	S799	-0.417	-0.388	_AQGEPVAGHES(ph)PKIPYEK_
SEC31A	Ubiquitylation	K806	-0.016	0.221	_IPYEK(gl)QQLPK_
SEC31A	Ubiquitylation	K1171	-0.024	-0.507	_CLSSATDPQTK(gl)R_
SEC31A	Phosphorylation	T1192	0.363	-1.264	_EQT(ph)LSPTITSGLHNIAR_
SEC31A	Phosphorylation	S1194	0.316	0.198	_EQTLS(ph)PTITSGLHNIAR_
SEC31A	Ubiquitylation	K1248	0.394	0.332	_VVLTQANK(gl)LGV_
STT3A	Ubiquitylation	K67		-0.037	_FLAEEGFYK(gl)_
STT3A	Ubiquitylation	K440		-0.508	_NLDISRPDK(gl)K_
STT3A	Ubiquitylation	K610		0.548	_IGGSTDTGK(gl)HIK_
STT3A	Ubiquitylation	K655		-0.577	_FGQVYTEAK(gl)RPPGFDR_
TUSC3	Ubiquitylation	K72		-0.120	_MNGDK(gl)FR_
TUSC3	Ubiquitylation	K78		-0.759	_FIK(gl)APPR_
UGGT1	Ubiquitylation	K356		0.816	_DLSQNFPTK(gl)AR_
UGGT2	Ubiquitylation	K782		-0.470	_LGIIYNPTSK(gl)INEENTAISR_