bioLOGIC-db

bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

Query: PGM3

RNAi screen result	RNAPII IP (PI)	CSB IP	CSB IP (PI)	Chrom.	Chrom. (PI)	Phosphorylation	Ubiquitylation
W

[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:
Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen

Gene name	Point score	Z-score sums	RNAi high	RNAi low	RNAPII-IP (PI)	CSB-IP	CSB-IP (PI)	Chrom.	Chrom. (PI)
PGM3	0	2.581	-0.810	1.250
PGM3	0	2.581	-0.810	1.250	0.589

PTM Sites:
Back to Protein Results | Red/green: hit at lower/upper end of the respective screen

Gene name	PTM type	PTM site	UV	UV (PI)	Sequence
PGM3	Phosphorylation	T90	0.252	0.400	_STIGVMVT(ph)ASHNPEEDNGVK_
PGM3	Phosphorylation	S92	0.330	0.265	_STIGVMVTAS(ph)HNPEEDNGVK_
PGM3	Ubiquitylation	K205		0.083	_YGK(gl)ATIEGYYQK_
PGM3	Ubiquitylation	K214		-0.055	_ATIEGYYQK(gl)LSK_
PGM3	Ubiquitylation	K224		-0.365	_AFVELTK(gl)QASCSGDEYR_
PGM3	Ubiquitylation	K378		-0.453	_VPVYCTK(gl)TGVK_
PGM3	Ubiquitylation	K237	-0.071	-1.543	_SLK(gl)VDCANGIGALK_

Background Information for PGM3:

Pubmed-PGM3 »

Uniprot-PGM3 »

Biogrid-PGM3 »

ProteomicsDB-PGM3 »

Tumorportal-PGM3 »

COSMIC-PGM3 »

GenomeRNAi-PGM3 »

Genecards-PGM3

Protein-protein Interactions for PGM3

Show screen data for	Category Name and Description	Link to cat description	Data Source

Protein Domains in PGM3

	Domain name	Domain Description	TC-NER relevance -log10(p-value)
Category members	A-D-PHexomutase_C	IPR005843	0.05
Category members	A-D-PHexomutase_a/b/a-I	IPR005844	0.05
Category members	A-D-PHexomutase_a/b/a-II	IPR005845	0.05
Category members	A-D-PHexomutase_a/b/a-I/II/III	IPR016055	0.05

Protein complexes (CORUM database) featuring PGM3

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)

Categories featuring PGM3

	Category Type	Category ID	Category Name	Data Source	TC-NER relevance -log10(p-value)
Category members	GO Category	GO:0005829	cytosol	Database	INF
Category members	Pathway	Pathway_11	REACTOME_METABOLISM_OF_PROTEINS	0	12.01
Category members	GO Category	GO:0044267	cellular protein metabolic process	Database	10.42
Category members	DDR Literature	pubmedid:19647519	Paulsen et al., 2009 siRNA screen for g-H2A.x phosphorylation		3.6
Category members	GO Category	GO:0006488	dolichol-linked oligosaccharide biosynthetic process	Database	0.28
Category members	GO Category	GO:0006048	UDP-N-acetylglucosamine biosynthetic process	Database	0.27
Category members	Pathway	Pathway_93	REACTOME_BIOSYNTHESIS_OF_THE_N_GLYCAN_PRECURSOR_DOLICHOL_LIPID_LINKED_OLIGOSACCHARIDE_LLO_AND_TRANSFER_TO_A_NASCENT_PROTEIN	0	0.18
Category members	GO Category	GO:0019255	glucose 1-phosphate metabolic process	Database	0.18
Category members	GO Category	GO:0005975	carbohydrate metabolic process	Database	0.07
Category members	Pathway	Pathway_61	KEGG_AMINO_SUGAR_AND_NUCLEOTIDE_SUGAR_METABOLISM	0	0.04
Category members	Pathway	Pathway_92	REACTOME_SYNTHESIS_OF_SUBSTRATES_IN_N_GLYCAN_BIOSYTHESIS	0	0
Category members	Pathway	Pathway_94	REACTOME_POST_TRANSLATIONAL_PROTEIN_MODIFICATION	0	0
Category members	Pathway	Pathway_95	REACTOME_ASPARAGINE_N_LINKED_GLYCOSYLATION	0	0
Category members	GO Category	GO:0000287	magnesium ion binding	Database	0
Category members	GO Category	GO:0004614	phosphoglucomutase activity	Database	0
Category members	GO Category	GO:0005575	cellular_component	Database	0
Category members	GO Category	GO:0006041	glucosamine metabolic process	Database	0
Category members	GO Category	GO:0007283	spermatogenesis	Database	0
Category members	GO Category	GO:0009790	embryo development	Database	0
Category members	GO Category	GO:0016868	intramolecular transferase activity, phosphotransferases	Database	0
Category members	GO Category	GO:0018279	protein N-linked glycosylation via asparagine	Database	0
Category members	GO Category	GO:0030097	hemopoiesis	Database	0
Category members	GO Category	GO:0043687	post-translational protein modification	Database	0