RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
RPA1	6	0.500	0.350	3.133	3.046	0.303	1.770	2.112
SPTB	2	-0.050	0.120
SPTB	2	-0.050	0.120	0.059	-0.418	-0.700	0.255	0.415
CIAPIN1	1	-1.480	2.260
NKAP	1	1.470	-1.040	-0.400			-0.272	-0.498
SOD2	1	-0.340	0.140		2.161		-0.330
PKNOX1	1	-1.500	2.500
PKNOX1	1	-1.500	2.500
TXNRD2	1	2.400	-0.860
LYN	1	-1.790	3.770
LYN	1	-1.790	3.770
PGM3	0	-0.810	1.250
PGM3	0	-0.810	1.250	0.589
TACC3	0	1.030	-0.910
CDK13	0	-0.100	0.210				-0.507	-0.248
TTC7A	0	0.820	-0.780
PICALM	0	0.890	-0.980				0.221	0.666
PICALM	0	0.890	-0.980
ADD2	0
JAG1	0	-0.260	0.070
SOX6	0	1.430	-0.800
BCL11A	0	0.570	-0.910			-0.307
BCL11A	0	0.570	-0.910		0.205	0.251
KDR	0	0.860	-0.680
TWSG1	0	0.420	-0.740
ASH2L	0	-0.380	-0.020	0.463	-0.135	0.610	0.279	0.403
MEN1	0	1.080	-1.150	0.101			0.684	-0.063
MEN1	0	1.080	-1.150			0.395
MEN1	0	1.080	-1.150
FLCN	0	1.070	-0.810
IFI16	0	0.400	-0.680				0.620	0.590
MELK	0	-0.620	0.710				-0.249	-0.278
SGPL1	0	0.190	0.490		-0.430		0.606	0.394
CTNNB1	0	0.490	-0.230
CTNNB1	0	0.490	-0.230	-0.415			0.628	0.215
RBPJ	0	1.900	-0.160	-0.367	0.284	0.723	-0.090	0.134
BMI1	0	0.900	-1.150	0.182
TET2	0	0.550	-0.710
TET2	0	0.680	-0.450
ZNF160	0	0.800	-1.010
BCL2	0	0.910	-0.740
RTKN2	0	0.070	-0.560
GLRX5	0	-1.070	0.840			0.368
CRIP2	0	1.520	-0.750
LCK	0	-0.490	1.390				0.295	0.576
NKX2-5	0	-0.150	1.230		0.174	0.236
NKX2-5	0	-0.150	1.230				-0.123

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ADD2	Phosphorylation	S11		-1.251	_(ac)SEETVPEAAS(ph)PPPPQGQPYFDR_
ADD2	Phosphorylation	S530	0.414	1.091	_SRS(ph)PSTESQLM(ox)SK_
ADD2	Phosphorylation	S592	-0.526	-0.457	_LELDGEKETAPEEPGS(ph)PAK_
ADD2	Phosphorylation	S596		-1.093	_S(ph)APAS(ph)PVQSPAK_
ADD2	Phosphorylation	S600	-0.697	-0.780	_S(ph)APAS(ph)PVQSPAK_
ADD2	Phosphorylation	S613	0.498	0.365	_EAETKS(ph)PLVSPSK_
ADD2	Phosphorylation	S621	1.217	0.704	_SPLVSPSKS(ph)LEEGTKK_
BCL11A	Phosphorylation	S86	-0.529	-0.504	_AVDKPPS(ph)PSPIEMK_
BCL11A	Phosphorylation	S88	-0.768	-0.180	_AVDKPPSPS(ph)PIEM(ox)K_
BCL11A	Phosphorylation	S205	-0.387	0.246	_IYLESEHGS(ph)PLTPR_
BCL11A	Phosphorylation	S328	-2.457	-1.626	_ELAGNTSS(ph)PPLSPGRPSPMQR_
BCL11A	Phosphorylation	S447	0.783	0.547	_SDDGLSTASS(ph)PEPGTSDLVGSASSALK_
BCL11A	Phosphorylation	S608	0.412	0.400	_GCS(ph)PGESASGGLSK_
BCL11A	Phosphorylation	S625	0.458	0.304	_LLLGS(ph)PSSLSPFSK_
BCL11A	Phosphorylation	S630	-0.946	-1.128	_LLLGSPSSLS(ph)PFSK_
BCL11A	Phosphorylation	T701	0.381	0.980	_FST(ph)PPGELDGGISGR_
BCL11A	Phosphorylation	S718		0.367	_SGTGS(ph)GGSTPHISGPGPGRPSSK_
BCL2	Ubiquitylation	K22	1.480		_YIHYK(gl)LSQR_
CDK13	Phosphorylation	S383	-0.073	0.010	_GGDVS(ph)PSPYSSSSWR_
CDK13	Phosphorylation	S493		-0.539	_ASNTS(ph)TPTKGNTETSASASQTNHVK_
CDK13	Phosphorylation	T494	-0.207		_ASNTST(ph)PTKGNTETSASASQTNHVK_
CDK13	Phosphorylation	S525	0.544	0.150	_IEHAPS(ph)PSSGGTLK_
CDK13	Phosphorylation	S664	-0.641		_CLLADLPLPPELPGGDDLSKS(ph)PEEK_
CDK13	Phosphorylation	T1246	-0.527	-0.133	_ILELT(ph)PEPDRPR_
CIAPIN1	Phosphorylation	S182	-0.954	-0.576	_KS(ph)SPSVKPAVDPAAAK_
CIAPIN1	Phosphorylation	S183	-0.707	-0.432	_KSS(ph)PSVKPAVDPAAAK_
CIAPIN1	Phosphorylation	S209		1.519	_LWTLSANDMEDDS(ph)MDLIDSDELLDPEDLKKPDPASLR_
CRIP2	Phosphorylation	S189		0.062	_ASS(ph)VTTFTGEPNTCPR_
CTNNB1	Ubiquitylation	K158		-1.265	_AIPELTK(gl)LLNDEDQVVVNK_
CTNNB1	Ubiquitylation	K180	-0.546	-0.636	_AAVM(ox)VHQLSK(gl)K_
CTNNB1	Ubiquitylation	K181	-0.717	-0.729	_AAVMVHQLSKK(gl)_
CTNNB1	Phosphorylation	S191	-0.024	0.129	_S(ph)PQMVSAIVR_
CTNNB1	Ubiquitylation	K435		-0.350	_NK(gl)MM(ox)VCQVGGIEALVR_
CTNNB1	Ubiquitylation	K496		-1.262	_LHYGLPVVVK(gl)_
CTNNB1	Phosphorylation	S552	1.233	1.224	_RTS(ph)MGGTQQQFVEGVR_
CTNNB1	Phosphorylation	T556	1.275	0.995	_RTSM(ox)GGT(ph)QQQFVEGVR_
CTNNB1	Ubiquitylation	K671	-0.941	-0.934	_MSEDKPQDYK(gl)K_
FLCN	Phosphorylation	S62	-0.873	-0.905	_AHS(ph)PAEGASVESSSPGPK_
JAG1	Ubiquitylation	K1142	-0.783		_HGANTVPIKDYENK(gl)_
KDR	Ubiquitylation	K1064		-1.119	_DIYK(gl)DPDYVR_
LCK	Phosphorylation	T37		-0.435	_YRPENTPEPVSTSVSHYGAEPT(ph)TVSPCPSSSAK_
LCK	Ubiquitylation	K191	-0.112	0.264	_ESETTK(gl)GAYSLSIR_
LCK	Ubiquitylation	K235	0.323		_AQFDTLQK(gl)LVK_
LCK	Ubiquitylation	K259		-1.613	_LTTVCPTVK(gl)PQTQGLAK_
LYN	Ubiquitylation	K20	-0.592		_GKDSLSDDGVDLK(gl)TQPVR_
LYN	Ubiquitylation	K40	0.100		_DPTSNK(gl)QQRPVPESQLLPGQR_
LYN	Phosphorylation	S104	0.944	0.841	_DSLS(ph)DDGVDLK_
LYN	Ubiquitylation	K213	0.441		_HYQK(gl)QADGLCR_
LYN	Ubiquitylation	K477	-0.191		_VENCPDELYDIMK(gl)MCWK_
MELK	Ubiquitylation	K55		-0.604	_IK(gl)TEIEALK_
MELK	Ubiquitylation	K419		-1.760	_TPANK(gl)LK_
MELK	Ubiquitylation	K597		-0.858	_GYTLK(gl)CQTQSDFGK_
MELK	Ubiquitylation	K650	-0.307		_LVEDILSSCK(gl)V_
MEN1	Ubiquitylation	K8	-1.132	0.088	_AAQK(gl)TLFPLR_
MEN1	Phosphorylation	S218		-0.820	_RES(ph)KPEEPPPPK_
NKAP	Phosphorylation	S9		0.004	_APVSGSRS(ph)PDREASGSGGR_
NKAP	Phosphorylation	S64		2.600	_NGLTHQLGGLS(ph)QGSR_
NKAP	Phosphorylation	S149	-0.075	-0.248	_IGELGAPEVWGLS(ph)PK_
NKAP	Ubiquitylation	K379	0.022		_ENQIYSADEK(gl)R_
PGM3	Phosphorylation	T90	0.252	0.400	_STIGVMVT(ph)ASHNPEEDNGVK_
PGM3	Phosphorylation	S92	0.330	0.265	_STIGVMVTAS(ph)HNPEEDNGVK_
PGM3	Ubiquitylation	K205		0.083	_YGK(gl)ATIEGYYQK_
PGM3	Ubiquitylation	K214		-0.055	_ATIEGYYQK(gl)LSK_
PGM3	Ubiquitylation	K224		-0.365	_AFVELTK(gl)QASCSGDEYR_
PGM3	Ubiquitylation	K237	-0.071	-1.543	_SLK(gl)VDCANGIGALK_
PGM3	Ubiquitylation	K378		-0.453	_VPVYCTK(gl)TGVK_
PICALM	Ubiquitylation	K210	-0.364	0.811	_YLNEK(gl)AVSYR_
PICALM	Phosphorylation	T294		-0.800	_KPHTSLT(ph)TAASPVSTSAGGIM(ox)TAPAIDIFSTPSSSNSTSK_
PKNOX1	Phosphorylation	S41		-0.871	_TEQDPNCSEPDAEGVS(ph)PPPVESQTPMDVDK_
PKNOX1	Ubiquitylation	K140	0.699	0.969	_VNELCK(gl)DFCSR_
RPA1	Ubiquitylation	K163	2.827	4.085	_AYGASK(gl)TFGK_
RPA1	Ubiquitylation	K167	3.009	3.243	_TFGK(gl)AAGPSLSHTSGGTQSK_
RPA1	Ubiquitylation	K183	0.925		_AAGPSLSHTSGGTQSK(gl)VVPIASLTPYQSK_
RPA1	Ubiquitylation	K263	-1.803		_GTLK(gl)IANK_
RPA1	Ubiquitylation	K267	2.751		_IANK(gl)QFTAVK_
RPA1	Ubiquitylation	K331	3.112	4.066	_SYEDATK(gl)ITVR_
RPA1	Ubiquitylation	K410	2.458		_SLSVLSSSTIIANPDIPEAYK(gl)LR_
RPA1	Ubiquitylation	K489	0.465	2.335	_K(gl)VIDQQNGLYR_
RPA1	Ubiquitylation	K588	-0.055		_IK(gl)ATVMDVKPVDYR_
RPA1	Ubiquitylation	K595	1.201		_ATVMDVK(gl)PVDYR_
RTKN2	Ubiquitylation	K101		-0.510	_GK(gl)IAISDIR_
SGPL1	Ubiquitylation	K107	-0.060		_NMSFLK(gl)VDKEYVK_
SGPL1	Ubiquitylation	K131	0.668		_LK(gl)EYSSMDAFWQEGR_
SGPL1	Ubiquitylation	K228		-0.506	_DLAFEK(gl)GIK_
SGPL1	Ubiquitylation	K231		-0.506	_DLAFEK(gl)GIK_
SOX6	Phosphorylation	S98	-0.827	-0.182	_NTSTS(ph)PHKPDEGSR_
SPTB	Ubiquitylation	K105	-0.685		_LPKPTK(gl)GR_
SPTB	Ubiquitylation	K593	-1.044	-0.240	_GVNASAQK(gl)FATDGEGYKPCDPQVIR_
SPTB	Ubiquitylation	K924	0.362		_QLMHSGHPSEK(gl)EIK_
SPTB	Ubiquitylation	K1532	-0.807		_NQTLQK(gl)EIQGHQPR_
SPTB	Phosphorylation	S2102	-0.534	-0.677	_RPPS(ph)PEPSTK_
SPTB	Phosphorylation	S2114		0.318	_TS(ph)PVSLWSR_
SPTB	Ubiquitylation	K2177	0.394		_AK(gl)TALPAQSAATLPAR_
SPTB	Ubiquitylation	K2269	1.563	1.748	_EAVCEVALDYK(gl)K_
SPTB	Ubiquitylation	K2270	1.484	1.748	_EAVCEVALDYKK(gl)_
SPTB	Phosphorylation	T2317	-0.391		_HEVSAST(ph)QSTPASSR_
SPTB	Phosphorylation	S2319	0.406	0.012	_HEVSASTQS(ph)TPASSR_
SPTB	Phosphorylation	T2320	0.156	-0.264	_HEVSASTQST(ph)PASSR_
SPTB	Phosphorylation	T2335		-0.213	_AQTLPTSVVT(ph)ITSESSPGKR_
SPTB	Phosphorylation	S2338		-0.151	_AQTLPTSVVTITS(ph)ESSPGK_
SPTB	Phosphorylation	S2340	-0.260	-0.175	_AQTLPTSVVTITSES(ph)SPGKR_
SPTB	Phosphorylation	S2341	-0.329	-0.373	_AQTLPTSVVTITSESS(ph)PGK_
SPTB	Ubiquitylation	K2344	1.728	-0.691	_AQTLPTSVVTITSESSPGK(gl)R_
SPTB	Ubiquitylation	K2362	1.856		_FSLFGK(gl)K_
SPTB	Ubiquitylation	K2363	1.856		_FSLFGK(gl)K_
TACC3	Phosphorylation	S25	-0.993	-0.186	_NTENCDFLFS(ph)PPEVTGR_
TACC3	Phosphorylation	T59		-2.436	_VTFQT(ph)PLRDPQTHR_
TACC3	Phosphorylation	S71	0.876	1.139	_ILS(ph)PSMASK_
TACC3	Phosphorylation	S175	0.134	0.059	_VS(ph)GSPEQAVEENLSSYSLDR_
TACC3	Phosphorylation	S177	0.248	0.430	_VSGS(ph)PEQAVEENLSSYSLDRR_
TACC3	Phosphorylation	T228		0.779	_AETPHGAEEECKAET(ph)PHGAEEECR_
TACC3	Phosphorylation	T249	-0.679	-0.649	_HGGVCAPAAVAT(ph)SPPGAIPK_
TACC3	Phosphorylation	S250	-0.740	-0.589	_HGGVCAPAAVATS(ph)PPGAIPK_
TACC3	Phosphorylation	T315	1.424		_AM(ox)T(ph)LSPQEEVAAGQMASSSR_
TACC3	Phosphorylation	S317	1.040	1.242	_AM(ox)TLS(ph)PQEEVAAGQM(ox)ASSSR_
TACC3	Phosphorylation	S434	0.179	0.184	_SGCSEAQPPES(ph)PETR_
TACC3	Ubiquitylation	K649		-0.831	_DLDAVVK(gl)ATQEENR_
TACC3	Ubiquitylation	K819	0.067		_TK(gl)ENEELTR_
TET2	Phosphorylation	S120	-0.232	0.141	_TVS(ph)EPSLSGLLQIK_
TTC7A	Ubiquitylation	K824		-1.775	_SLAQK(gl)VLR_
TWSG1	Ubiquitylation	K192		1.435	_ISCESMGASK(gl)YR_
TXNRD2	Ubiquitylation	K151		0.253	_VQLQDRK(gl)_
ZNF160	Ubiquitylation	K241	0.819		_SFTQK(gl)SHLR_