RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
AKT3	2	0.580	-0.030	-0.194
AKT3	2	0.580	-0.030
DFFA	2	-0.290	-0.220
CASP8	1	1.120	-1.090
PIK3R2	1	2.740	-1.180				0.269	0.348
PRKAR1A	1	-0.550	0.230
PRKAR1A	1	-0.550	0.230
TRAF2	1	-0.570	0.540
TRAF2	1	-0.570	0.540
AIFM1	1	1.570	0.130	0.210	0.652	-1.014	0.280	0.386
ENDOG	1	1.270	-0.970
PRKAR1B	1	0.660	-0.470
PRKAR1B	1	0.660	-0.470
BAD	0	-0.660	1.190
PRKAR2B	0	-0.290	0.380
CAPN1	0	0.770	-1.250
CAPN1	0	0.770	-1.250	0.308			0.573	0.029
FAS	0	1.380	-1.070
FAS	0	1.380	-1.070
PIK3CB	0	-1.390	2.350
PIK3CB	0	-0.710	1.450
TNFRSF1A	0	-0.590	0.470
PRKACA	0	0.380	-0.680		-1.005	-0.697	0.234	0.487
BAX	0	1.590	-1.170				0.811	0.359
XIAP	0	0.600	-0.210
XIAP	0	0.600	-0.210	-1.128
IKBKB	0	0.400	0.610
AKT2	0	-1.420	2.210	-0.194
PPP3CB	0	-1.240	2.140		-0.298	1.130
PPP3CB	0	-1.240	2.140				0.923	0.537
NFKB1	0	0.720	-0.810
BIRC2	0	-0.730	0.440
BIRC2	0	-0.730	0.440
PRKAR2A	0	-0.530	1.080	0.026	-1.317	-0.866	0.783	0.007
PRKAR2A	0	-0.530	1.080
PIK3R3	0	-0.140	-0.480
PIK3R3	0	-0.140	-0.480				-0.441	0.147
TNFRSF10B	0	-0.030	-0.780
PPP3CC	0	-0.380	1.050		-0.298	1.130
PPP3CC	0	-0.380	1.050				0.923	0.537
PIK3CA	0
RIPK1	0	-0.190	0.440
PPP3CA	0	1.550	-1.230		-0.298	1.130
PPP3CA	0	1.550	-1.230				0.923	0.537
TP53	0	-1.070	1.050	-2.808	0.076	-0.094	0.436	0.497
AKT1	0	-0.050	0.700
AKT1	0	0.860	-0.040
PRKACB	0	1.740	-1.200		-1.064
PRKACB	0	1.740	-1.200		-1.005	-0.697	0.234	0.487
PIK3R1	0	1.910	-1.220				-0.441	0.147
ATM	0						0.398	0.474
EXOG	0	0.140	-0.220
CAPN2	0	-1.140	1.400			0.314
CAPN2	0	-1.140	1.400	0.522			0.716	-0.611
CASP3	0	0.570	-0.390
CASP7	0	0.130	-0.130
DFFB	0	-0.200	-0.620
BCL2L1	0
BCL2	0	0.910	-0.740
CYCS	0	-0.020	-0.350				0.711	0.320
RELA	0	-1.130	1.600	0.793
CHUK	0			-0.480

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AIFM1	Ubiquitylation	K111	1.676		_ISGLGLTPEQKQK(gl)_
AIFM1	Ubiquitylation	K518	-0.545	-0.262	_ATAQDNPK(gl)SATEQSGTGIR_
AKT1	Phosphorylation	S124	0.252	0.311	_SGS(ph)PSDNSGAEEMEVSLAKPK_
AKT1	Phosphorylation	S126	-0.241		_SGSPS(ph)DNSGAEEM(ox)EVSLAK_
AKT1	Ubiquitylation	K301	0.988		_EGIK(gl)DGATMK_
AKT2	Ubiquitylation	K14	0.306	0.070	_EGWLHK(gl)R_
AKT2	Ubiquitylation	K111	1.082		_AIQMVANSLK(gl)QR_
AKT2	Ubiquitylation	K160		0.251	_LLGK(gl)GTFGK_
AKT2	Phosphorylation	T451	-0.091	-0.612	_YFDDEFTAQSITIT(ph)PPDRYDSLGLLELDQR_
AKT2	Phosphorylation	Y456		-0.265	_YFDDEFTAQSITITPPDRY(ph)DSLGLLELDQR_
AKT3	Ubiquitylation	K14	0.306	0.070	_EGWLHK(gl)R_
AKT3	Ubiquitylation	K14	4.941	5.277	_EGWVQK(gl)R_
AKT3	Ubiquitylation	K111	1.082		_AIQMVANSLK(gl)QR_
AKT3	Phosphorylation	S120		1.097	_MNCS(ph)PTSQIDNIGEEEMDASTTHHK_
AKT3	Ubiquitylation	K160		0.251	_LLGK(gl)GTFGK_
AKT3	Phosphorylation	T451	-0.091	-0.612	_YFDDEFTAQSITIT(ph)PPDRYDSLGLLELDQR_
AKT3	Phosphorylation	Y456		-0.265	_YFDDEFTAQSITITPPDRY(ph)DSLGLLELDQR_
ATM	Ubiquitylation	K307		-0.196	_GAYESTK(gl)WR_
ATM	Ubiquitylation	K331		-0.126	_GK(gl)YSSGFR_
ATM	Ubiquitylation	K385		-0.669	_ESSDYSVPCK(gl)R_
ATM	Ubiquitylation	K1101		-0.548	_LFQDTK(gl)GDSSR_
ATM	Ubiquitylation	K1109		-1.666	_LLK(gl)ALPLK_
ATM	Ubiquitylation	K1698		-1.026	_DASYTK(gl)ALK_
ATM	Ubiquitylation	K1738		-0.137	_SAAVTCLK(gl)NILATK_
ATM	Ubiquitylation	K2025		-1.497	_SIGEPDSLYGCGGGK(gl)MLQPITR_
BAD	Phosphorylation	S74	-0.904	-0.452	_HS(ph)SYPAGTEDDEGM(ox)GEEPSPFR_
BAD	Phosphorylation	S75	-0.914	-0.660	_HSS(ph)YPAGTEDDEGMGEEPSPFR_
BAD	Phosphorylation	S97		0.056	_S(ph)RSAPPNLWAAQR_
BAD	Phosphorylation	S99	-0.299	0.161	_S(ph)APPNLWAAQR_
BAD	Phosphorylation	S118	1.277	1.089	_RM(ox)S(ph)DEFVDSFKK_
BAX	Ubiquitylation	K57		-1.174	_MGGEAPELALDPVPQDASTK(gl)K_
BAX	Ubiquitylation	K58	-1.718	-1.174	_MGGEAPELALDPVPQDASTKK(gl)_
BAX	Ubiquitylation	K64	0.708	1.306	_LSECLK(gl)R_
BCL2	Ubiquitylation	K22	1.480		_YIHYK(gl)LSQR_
BCL2L1	Ubiquitylation	K87	0.026		_EVIPMAAVK(gl)QALR_
BIRC2	Ubiquitylation	K15	-0.259	0.307	_(ac)MEDSTILSDWTNSNK(gl)QK_
BIRC2	Ubiquitylation	K17	-0.259	0.307	_(ac)MEDSTILSDWTNSNK(gl)QK_
BIRC2	Ubiquitylation	K38	-0.069		_SIMEDSTILSDWTNSNKQK(gl)_
BIRC2	Ubiquitylation	K102		-1.755	_LGDSPIQK(gl)HK_
BIRC2	Ubiquitylation	K233	-0.511		_LSNWEPK(gl)DDAMSEHR_
BIRC2	Ubiquitylation	K410		0.878	_DLVK(gl)QTVQSK_
BIRC2	Ubiquitylation	K490	0.305	0.534	_ANVINK(gl)QEHDIIK_
BIRC2	Ubiquitylation	K497	-1.934		_ANVINKQEHDIIK(gl)QK_
CAPN1	Ubiquitylation	K79		1.041	_DLGPNSSK(gl)TYGIK_
CAPN1	Ubiquitylation	K280	0.470		_GHAYSVTGAK(gl)QVNYR_
CAPN1	Ubiquitylation	K359	0.871	0.535	_LEICNLTPDALK(gl)SR_
CASP3	Ubiquitylation	K11	-0.053	-0.687	_(ac)MENTENSVDSK(gl)SIK_
CASP3	Ubiquitylation	K14	-0.455	-0.687	_SIK(gl)NLEPK_
CASP3	Ubiquitylation	K57	-0.304	-1.817	_NFHK(gl)STGMTSR_
CASP3	Ubiquitylation	K82	-0.268	-0.605	_NLK(gl)YEVR_
CASP7	Phosphorylation	S16	0.096	-0.112	_(ac)ADDQGCIEEQGVEDS(ph)ANEDSVDAKPDR_
CASP7	Ubiquitylation	K80	0.580	-0.044	_NFDK(gl)VTGMGVR_
CASP8	Ubiquitylation	K183	1.917		_IINDYEEFSK(gl)ER_
CASP8	Ubiquitylation	K461		-2.031	_NMGK(gl)QMPQPTFTLR_
CHUK	Ubiquitylation	K296		-1.637	_GGPVDLTLK(gl)QPR_
CYCS	Ubiquitylation	K40		-2.265	_K(gl)TGQAPGYSYTAANK(gl)NK_
CYCS	Ubiquitylation	K54	-0.872	-1.922	_K(gl)TGQAPGYSYTAANK(gl)NK_
CYCS	Ubiquitylation	K56	-0.872	-1.922	_TGQAPGYSYTAANKNK(gl)_
CYCS	Ubiquitylation	K101		-1.859	_ADLIAYLKK(gl)_
DFFA	Phosphorylation	S28	2.697	2.074	_NYS(ph)REQHGVAASCLEDLR_
DFFA	Phosphorylation	S37	-0.697	-0.347	_EQHGVAAS(ph)CLEDLR_
DFFA	Ubiquitylation	K208	-0.111		_EGSLLSK(gl)QEESK_
DFFA	Phosphorylation	S315	-0.237	-0.360	_AS(ph)PPGDLQNPK_
DFFB	Ubiquitylation	K176		-0.696	_FQSK(gl)SGYLR_
ENDOG	Ubiquitylation	K76	0.472	2.088	_YGLPGLAQLK(gl)SR_
ENDOG	Ubiquitylation	K210		-0.409	_TEADGK(gl)SYVK_
ENDOG	Ubiquitylation	K214		-0.272	_SYVK(gl)YQVIGK_
ENDOG	Ubiquitylation	K290		-0.169	_AGSLK(gl)AITAGSK_
EXOG	Ubiquitylation	K44	0.879		_KLEELK(gl)AK_
FAS	Phosphorylation	S236	-0.027		_ENQGS(ph)HESPTLNPETVAINLSDVDLSK_
FAS	Phosphorylation	S239	0.266		_ENQGSHES(ph)PTLNPETVAINLSDVDLSK_
FAS	Ubiquitylation	K343	1.126		_IQTIILK(gl)DITSDSENSNFR_
IKBKB	Ubiquitylation	K106	0.253		_K(gl)YLNQFENCCGLR_
IKBKB	Phosphorylation	S672	0.670	0.244	_GPVSGS(ph)PDSMNASR_
NFKB1	Phosphorylation	S907	-0.025	0.113	_TTSQAHSLPLS(ph)PASTR_
PIK3CA	Ubiquitylation	K864	0.390	0.588	_NSHTIM(ox)QIQCK(gl)GGLK_
PIK3CA	Ubiquitylation	K868	0.204	0.651	_NSHTIM(ox)QIQCKGGLK(gl)_
PIK3CA	Ubiquitylation	K974	-0.273		_GAQECTK(gl)TREFER_
PIK3CB	Ubiquitylation	K1044		0.990	_SEEEALKQFKQK(gl)_
PIK3R2	Phosphorylation	S262		-2.237	_APPPPS(ph)SPPPGGAPDGSEPSPDFPALLVEK_
PIK3R2	Phosphorylation	S263		-2.237	_APPPPS(ph)SPPPGGAPDGSEPSPDFPALLVEK_
PIK3R2	Ubiquitylation	K500	-0.189		_IFEEQGQTQEK(gl)CSK_
PIK3R2	Ubiquitylation	K541	-0.609		_TK(gl)LEQQLR_
PIK3R2	Ubiquitylation	K564	-0.431	-1.022	_MNSLK(gl)PDLMQLR_
PIK3R3	Ubiquitylation	K226		-0.376	_YQQDQLVKEDNIDAVGKK(gl)_
PIK3R3	Ubiquitylation	K320		0.385	_LGEIHDSK(gl)MR_
PPP3CA	Ubiquitylation	K32	-0.137		_LTAK(gl)EVFDNDGKPR_
PPP3CA	Ubiquitylation	K56		0.132	_VDVLK(gl)NHLVK_
PPP3CA	Ubiquitylation	K323		0.705	_AAVLK(gl)YENNVMNIR_
PPP3CA	Ubiquitylation	K405		0.078	_AIGK(gl)MAR_
PPP3CB	Ubiquitylation	K32	-0.137		_LTAK(gl)EVFDNDGKPR_
PPP3CB	Ubiquitylation	K56		0.132	_VDVLK(gl)NHLVK_
PPP3CB	Ubiquitylation	K323		0.705	_AAVLK(gl)YENNVMNIR_
PPP3CB	Ubiquitylation	K405		0.078	_AIGK(gl)MAR_
PPP3CC	Ubiquitylation	K32	-0.137		_LTAK(gl)EVFDNDGKPR_
PPP3CC	Ubiquitylation	K56		0.132	_VDVLK(gl)NHLVK_
PPP3CC	Ubiquitylation	K323		0.705	_AAVLK(gl)YENNVMNIR_
PPP3CC	Ubiquitylation	K405		0.078	_AIGK(gl)MAR_
PRKACA	Ubiquitylation	K30	-0.143		_AKEDFLKK(gl)_
PRKACA	Ubiquitylation	K93	0.839	0.714	_QIEHTLNEK(gl)R_
PRKACB	Ubiquitylation	K30	-0.143		_AKEDFLKK(gl)_
PRKACB	Ubiquitylation	K93	0.839	0.714	_QIEHTLNEK(gl)R_
PRKACB	Phosphorylation	T243		-0.835	_T(ph)WTLCGTPEYLAPEIILSK_
PRKACB	Phosphorylation	T245	-0.116	-0.102	_TWT(ph)LCGTPEYLAPEIILSK_
PRKAR1A	Ubiquitylation	K63	-1.895		_LEKEEAK(gl)QIQNLQK_
PRKAR1A	Ubiquitylation	K70	-0.869	0.073	_QIQNLQK(gl)AGTR_
PRKAR1A	Phosphorylation	S83	-0.969	-0.776	_EDEIS(ph)PPPPNPVVK_
PRKAR1A	Ubiquitylation	K92	-3.269	-2.395	_TDSREDEISPPPPNPVVK(gl)GR_
PRKAR1A	Ubiquitylation	K222	0.412	0.536	_TNVK(gl)LWGIDR_
PRKAR1A	Ubiquitylation	K244	-0.384	3.721	_K(gl)MYEEFLSK_
PRKAR1A	Ubiquitylation	K261	-0.886		_VSILESLDK(gl)WER_
PRKAR1A	Ubiquitylation	K346		0.329	_GPLK(gl)CVK_
PRKAR1A	Ubiquitylation	K349	-0.425	-0.103	_CVK(gl)LDRPR_
PRKAR1A	Ubiquitylation	K367	-0.939	0.044	_VLGPCSDILK(gl)R_
PRKAR1B	Phosphorylation	S3	0.185	0.343	_(ac)AS(ph)PPACPSEEDESLKGCELYVQLHGIQQVLK_
PRKAR1B	Ubiquitylation	K244	-0.384	3.721	_K(gl)MYEEFLSK_
PRKAR1B	Ubiquitylation	K346		0.329	_GPLK(gl)CVK_
PRKAR1B	Ubiquitylation	K349	-0.425	-0.103	_CVK(gl)LDRPR_
PRKAR2A	Phosphorylation	S99	0.020	0.056	_RVS(ph)VCAETYNPDEEEEDTDPR_
PRKAR2A	Phosphorylation	T104	-0.175		_RVSVCAET(ph)YNPDEEEEDTDPR_
PRKAR2A	Ubiquitylation	K359	0.640		_GQYFGELALVTNK(gl)PR_
PRKAR2B	Phosphorylation	T69		-0.367	_TWGDLGAAAGGGT(ph)PSK_
PRKAR2B	Phosphorylation	S114	0.366	0.525	_RAS(ph)VCAEAYNPDEEEDDAESR_
PRKAR2B	Ubiquitylation	K359	0.640		_GQYFGELALVTNK(gl)PR_
RIPK1	Ubiquitylation	K642	-0.431		_EGIK(gl)GATVGK_
TNFRSF10B	Ubiquitylation	K369	-0.724		_KLGLMDNEIK(gl)VAK_
TNFRSF1A	Ubiquitylation	K242		-0.111	_SK(gl)LYSIVCGK_
TP53	Ubiquitylation	K120	-0.188		_LGFLHSGTAK(gl)SVTCTYSPALNK_
TP53	Ubiquitylation	K164	0.157	-1.260	_AMAIYK(gl)QSQHMTEVVR_
TP53	Phosphorylation	S314	-0.695	-1.000	_ALPNNTSS(ph)SPQPK_
TP53	Phosphorylation	S315	-0.762	-0.959	_RALPNNTSSS(ph)PQPK_
TP53	Ubiquitylation	K320	-0.978		_ALPNNTSSSPQPKK(gl)_
TP53	Ubiquitylation	K357	-0.231	-0.823	_ELNEALELKDAQAGK(gl)EPGGSR_
TRAF2	Phosphorylation	T7	-0.822	-1.190	_(ac)AAASVT(ph)PPGSLELLQPGFSK_
TRAF2	Ubiquitylation	K27	-0.253	2.194	_TLLGTK(gl)LEAK_
TRAF2	Ubiquitylation	K119		0.519	_GTLK(gl)EYESCHEGR_
TRAF2	Ubiquitylation	K176	-1.233	1.022	_APCCGADVK(gl)AHHEVCPK_
TRAF2	Ubiquitylation	K207	0.147	0.918	_FQDHVK(gl)TCGK_
TRAF2	Ubiquitylation	K481	-0.507	0.417	_MEAK(gl)NSYVR_
XIAP	Ubiquitylation	K31	-0.312	-0.651	_LK(gl)TFANFPSGSPVSASTLAR_
XIAP	Ubiquitylation	K208	-0.788	-0.846	_LK(gl)NWEPCDR_
XIAP	Ubiquitylation	K358	-0.720	0.047	_TTEK(gl)TPSLTR_