RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
MAPK9	1	0.110	-0.490
RIPK2	1	-1.740	3.580
YWHAE	1	0.440	-0.380		1.095	-0.160
YWHAE	1	0.440	-0.380	1.129			0.621	0.321
APH1B	1	-1.760	3.070
NDNL2	1	-1.630	2.620				-1.210	-0.392
BAD	0	-0.660	1.190
RHOA	0	-0.510	1.370	-0.485			0.532	0.279
PRKCZ	0	-0.290	0.310
PSEN1	0	0.930	-1.110
XIAP	0	0.600	-0.210
XIAP	0	0.600	-0.210	-1.128
IKBKB	0	0.400	0.610
BIRC2	0	-0.730	0.440
BIRC2	0	-0.730	0.440
RTN4	0	0.530	-0.760		0.863		-1.844	-1.505
PIK3CA	0
BEX1	0	1.430	-1.040
SORT1	0
RAC1	0	-0.580	1.580	0.486			-0.364	-0.568
FURIN	0	1.280	-0.730
TP53	0	-1.070	1.050	-2.808	0.076	-0.094	0.436	0.497
ARHGDIA	0	-0.150	-0.030	0.141				-2.525
APP	0	0.100	-0.260					0.285
AKT1	0	-0.050	0.700
AKT1	0	0.860	-0.040
PRKACB	0	1.740	-1.200		-1.064
PRKACB	0	1.740	-1.200		-1.005	-0.697	0.234	0.487
RHOB	0	0.130	-0.210
PIK3R1	0	1.910	-1.220				-0.441	0.147
ADAM17	0	0.520	-0.620
RHOC	0	-0.810	0.570
RHOC	0	-0.810	0.570	-0.485			0.532	0.279
SQSTM1	0	-0.860	1.770	-2.165			-2.063	-1.741
SQSTM1	0	-0.440	0.530	-2.165			-2.063	-1.741
NCSTN	0	-1.540	2.100				0.618	0.379
PRKCI	0	0.730	-0.460	1.483			0.192	0.350
CASP3	0	0.570	-0.390
CYCS	0	-0.020	-0.350				0.711	0.320
DIABLO	0	0.740	-0.290				0.517	0.500
DIABLO	0	0.740	-0.290	-0.061
PSENEN	0	-0.550	0.740
CHUK	0			-0.480

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ADAM17	Phosphorylation	S791	-0.594	0.152	_S(ph)FEDLTDHPVTR_
AKT1	Phosphorylation	S124	0.252	0.311	_SGS(ph)PSDNSGAEEMEVSLAKPK_
AKT1	Phosphorylation	S126	-0.241		_SGSPS(ph)DNSGAEEM(ox)EVSLAK_
AKT1	Ubiquitylation	K301	0.988		_EGIK(gl)DGATMK_
APH1B	Ubiquitylation	K102		-0.148	_ASEGLK(gl)SINPGETAPSMR_
APP	Ubiquitylation	K751	-1.778	-1.280	_HLSK(gl)M(ox)QQNGYENPTYK_
ARHGDIA	Phosphorylation	S24	-1.058	-0.942	_(ac)AEQEPTAEQLAQIAAENEEDEHS(ph)VNYKPPAQK_
ARHGDIA	Ubiquitylation	K52		0.380	_YK(gl)EALLGR_
ARHGDIA	Ubiquitylation	K99	0.365		_K(gl)QSFVLK_
ARHGDIA	Ubiquitylation	K127	1.141		_EIVSGMK(gl)YIQHTYR_
ARHGDIA	Ubiquitylation	K141	0.314	0.567	_IDK(gl)TDYM(ox)VGSYGPR_
ARHGDIA	Ubiquitylation	K167	-1.199		_AEEYEFLTPVEEAPK(gl)GMLAR_
ARHGDIA	Ubiquitylation	K178		0.739	_GSYSIK(gl)SR_
BAD	Phosphorylation	S74	-0.904	-0.452	_HS(ph)SYPAGTEDDEGM(ox)GEEPSPFR_
BAD	Phosphorylation	S75	-0.914	-0.660	_HSS(ph)YPAGTEDDEGMGEEPSPFR_
BAD	Phosphorylation	S97		0.056	_S(ph)RSAPPNLWAAQR_
BAD	Phosphorylation	S99	-0.299	0.161	_S(ph)APPNLWAAQR_
BAD	Phosphorylation	S118	1.277	1.089	_RM(ox)S(ph)DEFVDSFKK_
BEX1	Ubiquitylation	K130	-1.968	0.603	_QLMEK(gl)LR_
BEX1	Ubiquitylation	K134	-1.057	0.454	_EK(gl)QLSHSLR_
BIRC2	Ubiquitylation	K15	-0.259	0.307	_(ac)MEDSTILSDWTNSNK(gl)QK_
BIRC2	Ubiquitylation	K17	-0.259	0.307	_(ac)MEDSTILSDWTNSNK(gl)QK_
BIRC2	Ubiquitylation	K38	-0.069		_SIMEDSTILSDWTNSNKQK(gl)_
BIRC2	Ubiquitylation	K102		-1.755	_LGDSPIQK(gl)HK_
BIRC2	Ubiquitylation	K233	-0.511		_LSNWEPK(gl)DDAMSEHR_
BIRC2	Ubiquitylation	K410		0.878	_DLVK(gl)QTVQSK_
BIRC2	Ubiquitylation	K490	0.305	0.534	_ANVINK(gl)QEHDIIK_
BIRC2	Ubiquitylation	K497	-1.934		_ANVINKQEHDIIK(gl)QK_
CASP3	Ubiquitylation	K11	-0.053	-0.687	_(ac)MENTENSVDSK(gl)SIK_
CASP3	Ubiquitylation	K14	-0.455	-0.687	_SIK(gl)NLEPK_
CASP3	Ubiquitylation	K57	-0.304	-1.817	_NFHK(gl)STGMTSR_
CASP3	Ubiquitylation	K82	-0.268	-0.605	_NLK(gl)YEVR_
CHUK	Ubiquitylation	K296		-1.637	_GGPVDLTLK(gl)QPR_
CYCS	Ubiquitylation	K40		-2.265	_K(gl)TGQAPGYSYTAANK(gl)NK_
CYCS	Ubiquitylation	K54	-0.872	-1.922	_K(gl)TGQAPGYSYTAANK(gl)NK_
CYCS	Ubiquitylation	K56	-0.872	-1.922	_TGQAPGYSYTAANKNK(gl)_
CYCS	Ubiquitylation	K101		-1.859	_ADLIAYLKK(gl)_
FURIN	Ubiquitylation	K789	-1.074	-0.470	_TAFIK(gl)DQSAL_
IKBKB	Ubiquitylation	K106	0.253		_K(gl)YLNQFENCCGLR_
IKBKB	Phosphorylation	S672	0.670	0.244	_GPVSGS(ph)PDSMNASR_
MAPK9	Phosphorylation	Y185		3.533	_TACTNFMMTPY(ph)VVTR_
NCSTN	Ubiquitylation	K110		1.107	_DLMEK(gl)LK_
NDNL2	Phosphorylation	S60		-0.694	_GPGGSQGS(ph)QGPSPQGAR_
NDNL2	Phosphorylation	S64	-1.141	-1.086	_GPGGSQGSQGPS(ph)PQGAR_
NDNL2	Ubiquitylation	K83	0.267		_SQK(gl)QLELK_
NDNL2	Ubiquitylation	K260		-0.249	_TNLETSK(gl)MK_
NDNL2	Ubiquitylation	K262		-0.249	_TNLETSK(gl)MK_
PIK3CA	Ubiquitylation	K864	0.390	0.588	_NSHTIM(ox)QIQCK(gl)GGLK_
PIK3CA	Ubiquitylation	K868	0.204	0.651	_NSHTIM(ox)QIQCKGGLK(gl)_
PIK3CA	Ubiquitylation	K974	-0.273		_GAQECTK(gl)TREFER_
PRKACB	Ubiquitylation	K30	-0.143		_AKEDFLKK(gl)_
PRKACB	Ubiquitylation	K93	0.839	0.714	_QIEHTLNEK(gl)R_
PRKACB	Phosphorylation	T243		-0.835	_T(ph)WTLCGTPEYLAPEIILSK_
PRKACB	Phosphorylation	T245	-0.116	-0.102	_TWT(ph)LCGTPEYLAPEIILSK_
PRKCI	Ubiquitylation	K244	0.289		_ESGK(gl)ASSSLGLQDFDLLR_
PRKCI	Ubiquitylation	K488	-0.090	0.847	_SLSVK(gl)AASVLK_
PRKCZ	Phosphorylation	T560	-0.884	-1.578	_KQALPPFQPQITDDYGLDNFDTQFTSEPVQLT(ph)PDDEDAIKR_
PSEN1	Phosphorylation	S313		0.844	_VSKNS(ph)KYNAESTER_
PSEN1	Ubiquitylation	K314	0.016	0.414	_NSK(gl)YNAESTER_
PSEN1	Phosphorylation	S366	-0.340	0.055	_AAVQELSS(ph)SILAGEDPEER_
PSEN1	Phosphorylation	S367	0.005	0.066	_AAVQELSSS(ph)ILAGEDPEER_
PSENEN	Ubiquitylation	K11		0.476	_VSNEEK(gl)LNLCR_
RAC1	Ubiquitylation	K115	-1.745	-0.215	_AK(gl)WYPEVR_
RAC1	Ubiquitylation	K142	0.492		_LDLRDDK(gl)DTIEK_
RAC1	Ubiquitylation	K152	0.099	-0.292	_K(gl)LTPITYPQGLAMAK_
RAC1	Ubiquitylation	K166	-0.981	-0.655	_LTPITYPQGLAMAK(gl)EIGAVK_
RAC1	Ubiquitylation	K172	1.026	0.412	_EIGAVK(gl)YLECSALTQR_
RAC1	Ubiquitylation	K185	-0.113	0.578	_GLK(gl)TVFDEAIR_
RAC1	Ubiquitylation	K202	-1.379	-1.447	_AVLCPPPVK(gl)KR_
RAC1	Ubiquitylation	K203	-1.708	-1.447	_AVLCPPPVKK(gl)_
RHOA	Ubiquitylation	K6	0.708		_K(gl)KLVIVGDGACGK_
RHOA	Ubiquitylation	K7	0.708		_K(gl)KLVIVGDGACGK_
RHOA	Ubiquitylation	K118	-0.408		_HFCPNVPIILVGNK(gl)K_
RHOA	Ubiquitylation	K119	-0.408		_HFCPNVPIILVGNK(gl)K_
RHOA	Ubiquitylation	K135	-0.528	-0.796	_MK(gl)QEPVKPEEGRDMANR_
RHOA	Ubiquitylation	K162	0.345	0.453	_IGAFGYMECSAK(gl)TK_
RHOB	Ubiquitylation	K135	0.050	-0.281	_MK(gl)QEPVRTDDGR_
RHOC	Ubiquitylation	K6	0.708		_K(gl)KLVIVGDGACGK_
RHOC	Ubiquitylation	K7	0.708		_K(gl)KLVIVGDGACGK_
RHOC	Ubiquitylation	K118	-0.408		_HFCPNVPIILVGNK(gl)K_
RHOC	Ubiquitylation	K119	-0.408		_HFCPNVPIILVGNK(gl)K_
RHOC	Ubiquitylation	K135	-0.528	-0.796	_MK(gl)QEPVKPEEGRDMANR_
RHOC	Ubiquitylation	K162	0.345	0.453	_IGAFGYMECSAK(gl)TK_
RHOC	Ubiquitylation	K172	0.050	-0.660	_MK(gl)QEPVRSEEGR_
RIPK2	Ubiquitylation	K410	-2.810		_AAFCDHK(gl)TTPCSSAIINPLSTAGNSER_
RIPK2	Phosphorylation	S531	0.884	0.839	_SPS(ph)LNLLQNK_
RIPK2	Ubiquitylation	K538	-2.659		_SPSLNLLQNK(gl)SM_
RTN4	Phosphorylation	S7		-1.343	_(ac)MEDLDQS(ph)PLVSSSDS(ph)PPRPQPAFK_
RTN4	Phosphorylation	S11	-0.625	-0.783	_(ac)MEDLDQSPLVS(ph)SSDSPPRPQPAFK_
RTN4	Phosphorylation	S13		-0.816	_(ac)MEDLDQSPLVSSS(ph)DSPPRPQPAFK_
RTN4	Phosphorylation	S15	-0.846	-0.788	_(ac)M(ox)EDLDQS(ph)PLVSSSDS(ph)PPRPQPAFK_
RTN4	Phosphorylation	S107		-1.749	_GPLPAAPPVAPERQPS(ph)WDPSPVSSTVPAPSPLSAAAVSPSK_
RTN4	Phosphorylation	S181	-0.061	-0.102	_RRGS(ph)SGSVDETLFALPAASEPVIR_
RTN4	Phosphorylation	S184	0.143	0.327	_GSSGS(ph)VDETLFALPAASEPVIR_
RTN4	Phosphorylation	T188	0.091	0.389	_RGSSGSVDET(ph)LFALPAASEPVIR_
RTN4	Phosphorylation	T856	0.863	0.955	_ET(ph)ETFSDSSPIEIIDEFPTLISSK_
RTN4	Ubiquitylation	K1174		0.266	_NVK(gl)DAMAK_
SORT1	Ubiquitylation	K294		-0.104	_TSDLGK(gl)SFK_
SORT1	Ubiquitylation	K388	-2.073	-0.343	_GIVYSK(gl)SLDR_
SQSTM1	Ubiquitylation	K13	0.150	0.302	_AYLLGK(gl)EDAAR_
SQSTM1	Phosphorylation	S28		-0.721	_RFSFCCS(ph)PEPEAEAEAAAGPGPCER_
SQSTM1	Ubiquitylation	K141	-0.915		_YK(gl)CSVCPDYDLCSVCEGK_
SQSTM1	Ubiquitylation	K157	-0.852	-0.677	_CSVCPDYDLCSVCEGK(gl)GLHR_
SQSTM1	Phosphorylation	T269	-0.681	-0.421	_LT(ph)PVS(ph)PESSSTEEK_
SQSTM1	Phosphorylation	S272	0.171	0.044	_LTPVS(ph)PESSSTEEK_
SQSTM1	Phosphorylation	S332		-0.007	_IALESEGRPEEQMESDNCS(ph)GGDDDWTHLSSK_
SQSTM1	Ubiquitylation	K420	-1.122	-0.061	_LLQTK(gl)NYDIGAALDTIQYSK_
SQSTM1	Ubiquitylation	K435	-1.352	-0.780	_NYDIGAALDTIQYSK(gl)HPPPL_
TP53	Ubiquitylation	K120	-0.188		_LGFLHSGTAK(gl)SVTCTYSPALNK_
TP53	Ubiquitylation	K164	0.157	-1.260	_AMAIYK(gl)QSQHMTEVVR_
TP53	Phosphorylation	S314	-0.695	-1.000	_ALPNNTSS(ph)SPQPK_
TP53	Phosphorylation	S315	-0.762	-0.959	_RALPNNTSSS(ph)PQPK_
TP53	Ubiquitylation	K320	-0.978		_ALPNNTSSSPQPKK(gl)_
TP53	Ubiquitylation	K357	-0.231	-0.823	_ELNEALELKDAQAGK(gl)EPGGSR_
XIAP	Ubiquitylation	K31	-0.312	-0.651	_LK(gl)TFANFPSGSPVSASTLAR_
XIAP	Ubiquitylation	K208	-0.788	-0.846	_LK(gl)NWEPCDR_
XIAP	Ubiquitylation	K358	-0.720	0.047	_TTEK(gl)TPSLTR_
YWHAE	Ubiquitylation	K38	0.710	1.822	_YDEMVESMK(gl)K_
YWHAE	Ubiquitylation	K39		1.734	_YDEMVESMKK(gl)_
YWHAE	Ubiquitylation	K60	0.554	1.732	_NLLSVAYK(gl)NVIGAR_
YWHAE	Ubiquitylation	K83	0.375	0.643	_IISSIEQKEENK(gl)GGEDKLK_
YWHAE	Ubiquitylation	K90	1.103		_GGEDKLK(gl)MIR_
YWHAE	Ubiquitylation	K116	-0.289		_LICCDILDVLDK(gl)HLIPAANTGESK_
YWHAE	Ubiquitylation	K133	0.653	1.264	_VFYYK(gl)M(ox)K_
YWHAE	Ubiquitylation	K152	0.031	0.601	_K(gl)EAAENSLVAYK_
YWHAE	Phosphorylation	S210	0.534	0.506	_AAFDDAIAELDTLS(ph)EESYK_
YWHAE	Phosphorylation	S213		0.541	_AAFDDAIAELDTLSEES(ph)YK_