RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
PBX2	2	-0.170	0.670	-0.186		-0.124
HOXB6	1	0.140	-0.270
MSX2	1	-0.260	0.240
HOXB6	1	0.140	-0.270			0.888	0.311	-0.017
HOXC6	1	2.050	-1.290			0.888	0.311	-0.017
HTT	1	-0.200	-0.360	0.632			0.847	0.550
ARC	1	0.350	-0.540
HOXA11	0	-0.050	0.240
HIPK2	0	-0.990	0.680
LRP6	0	0.210	0.050
CRKL	0	0.290	-0.620
YY1	0	-0.370	0.560	0.179	0.557	0.050	-0.096	0.076
HOXA5	0	0.030	-0.190					-0.887
GLI3	0	-0.980	1.650
TGFBR1	0	-0.260	0.020
BMPR1A	0	0.020	-0.130
WNT5A	0
SF3B1	0			0.308	-0.445	-0.096	-0.608	-0.188
HOXC13	0	0.030	0.890		-0.027	0.427
HOXC13	0	0.030	0.890	-1.413				0.651
HOXD13	0	1.230	-1.330		-0.027	0.427
HOXD13	0	1.230	-1.330					-0.993
ALDH1A2	0	-1.010	0.740
GRSF1	0	1.010	-0.710	0.775	0.625	-0.778	-0.386	-0.048
SMAD4	0	0.420	-0.390		0.020	0.556		-0.485
VANGL2	0	-1.030	1.450
MSX1	0	0.420	-0.450
HIPK1	0	1.760	-0.820
T	0	0.200	-0.340	-0.755
HOXA5	0	0.030	-0.190			0.888	0.311	-0.017
HOXA6	0					0.888	0.311	-0.017
HOXA7	0	-0.250	0.230			0.888	0.311	-0.017
HOXB5	0	-0.180	0.680			0.888	0.311	-0.017
HOXB8	0					0.888	0.311	-0.017
HOXB9	0	0.790	-0.720			0.888	0.311	-0.017
HOXC5	0	0.530	-0.790			0.888	0.311	-0.017
HOXC8	0	-0.250	-0.230			0.888	0.311	-0.017
HOXC9	0	0.260	-0.820			0.888	0.311	-0.017
HOXD9	0	-1.260	1.800			0.888	0.311	-0.017
MLLT3	0	0.980	-0.760
SMAD2	0
CTNNBIP1	0	0.180	-0.150
ALX1	0	0.810	-0.890
HOXC9	0	0.260	-0.820
HOXC10	0	-1.330	1.990
NR2F2	0	-1.120	1.260	-1.119	0.136	0.670
NR2F2	0	-1.120	1.260		0.225	0.992	0.424	0.474
PBX1	0	-0.600	0.280
PBX1	0	-0.600	0.280	-0.186		-0.124

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ALDH1A2	Ubiquitylation	K365		-1.744	_VVGSPFDPTTEQGPQIDK(gl)K_
ALDH1A2	Ubiquitylation	K366		-1.744	_VVGSPFDPTTEQGPQIDK(gl)K_
ALDH1A2	Ubiquitylation	K507		0.123	_EYSEVK(gl)TVTVK_
ALX1	Phosphorylation	T68	0.678	0.289	_T(ph)SPCQDSSVNYGITK_
ALX1	Phosphorylation	S69	0.678	0.484	_T(ph)SPCQDSSVNYGITK_
ARC	Ubiquitylation	K70	-2.090	-2.396	_SVGK(gl)LESNLDGYVPTSDSQR_
ARC	Ubiquitylation	K92		-1.864	_SIK(gl)ACLCR_
ARC	Ubiquitylation	K269		3.154	_NWVEFKK(gl)_
BMPR1A	Ubiquitylation	K232	-0.391	0.172	_TIAK(gl)QIQMVR_
BMPR1A	Ubiquitylation	K477	0.265	-0.134	_EVVCVK(gl)R_
CRKL	Phosphorylation	S41		0.868	_DS(ph)STCPGDYVLSVSENSR_
CRKL	Phosphorylation	S107	-0.818	-1.177	_YPS(ph)PPMGSVSAPNLPTAEDNLEYVR_
CTNNBIP1	Ubiquitylation	K19	-1.489		_EGAPGKSPEEMYIQQK(gl)VR_
GLI3	Phosphorylation	S664	-0.582	-0.252	_S(ph)PGRPTQGALGEQQDLSNTTSK_
GRSF1	Ubiquitylation	K242	0.232	-0.120	_SLQVK(gl)SSPVVNDGVVR_
HIPK1	Ubiquitylation	K492		-0.060	_YISQTQGLPAEYLLSAGTK(gl)TTR_
HIPK1	Ubiquitylation	K614		-0.350	_SCFQNMEICK(gl)R_
HIPK1	Phosphorylation	S1271		-0.186	_GSTIYTGYPLS(ph)PTK_
HIPK2	Ubiquitylation	K492		-0.060	_YISQTQGLPAEYLLSAGTK(gl)TTR_
HIPK2	Ubiquitylation	K614		-0.350	_SCFQNMEICK(gl)R_
HOXA11	Ubiquitylation	K72		-0.905	_EYAIEPATK(gl)WHPR_
HOXA11	Phosphorylation	S84	0.313	0.946	_GNLAHCYS(ph)AEELVHR_
HOXB6	Phosphorylation	S209		1.246	_LLS(ph)ASQLSAEEEEEKQAE_
HOXB6	Phosphorylation	S211		1.067	_LLSAS(ph)QLSAEEEEEKQAE_
HOXB6	Phosphorylation	S214	1.598	1.416	_LLSASQLS(ph)AEEEEEKQAE_
HOXC10	Phosphorylation	S226		0.358	_TEQSLAGPKGS(ph)PSESEKER_
HOXC13	Ubiquitylation	K335	0.431	0.162	_VQLK(gl)ELER_
HOXC9	Phosphorylation	S162	0.747	0.640	_APQTLPS(ph)PEADALAGSK_
HOXD13	Ubiquitylation	K335	0.431	0.162	_VQLK(gl)ELER_
HTT	Ubiquitylation	K260		-0.128	_AFIANLK(gl)_
HTT	Phosphorylation	S419	0.595	0.531	_SGS(ph)IVELIAGGGSSCS(ph)PVLSR_
HTT	Phosphorylation	S430	0.402	0.494	_SGSIVELIAGGGSS(ph)CSPVLSR_
HTT	Phosphorylation	S432	0.317	0.640	_SGSIVELIAGGGSSCS(ph)PVLSR_
HTT	Phosphorylation	S1195	-0.222	0.264	_EKEPGEQAS(ph)VPLSPK_
HTT	Phosphorylation	S1199	-0.456	-0.970	_GKEKEPGEQASVPLS(ph)PK_
HTT	Ubiquitylation	K1402	0.169	-0.538	_VSTQLK(gl)TNLTSVTK_
HTT	Phosphorylation	S1874	1.994	1.028	_LLSPQMS(ph)GEEEDSDLAAK_
LRP6	Ubiquitylation	K1443		-0.221	_GK(gl)SMISSLSIMGGSSGPPYDR_
MLLT3	Phosphorylation	S522	0.537	0.528	_TNNNQILEVKS(ph)PIK_
MSX1	Phosphorylation	S154		0.148	_RLS(ph)PPACTLR_
MSX2	Phosphorylation	S3	-1.986	-1.774	_(ac)AS(ph)PSKGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEER_
MSX2	Phosphorylation	S5	-1.986		_AS(ph)PS(ph)KGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEER_
MSX2	Phosphorylation	S63		3.351	_EAS(ph)PLPAESASAGATLRPLLLSGHGAR_
MSX2	Phosphorylation	S91	-0.783	-0.727	_EAHS(ph)PGPLVKPFETASVK_
MSX2	Phosphorylation	S123		-0.062	_SENSEDGAAWMQEPGRYS(ph)PPPR_
NR2F2	Ubiquitylation	K362		0.144	_FGK(gl)LLLR_
NR2F2	Ubiquitylation	K389	-0.473	-0.156	_LVGK(gl)TPIETLIR_
PBX1	Ubiquitylation	K164		-0.541	_SK(gl)LAQIR_
PBX1	Ubiquitylation	K195	-1.614		_TRPISPK(gl)EIER_
PBX2	Ubiquitylation	K164		-0.541	_SK(gl)LAQIR_
SF3B1	Phosphorylation	S129	-0.787	-0.713	_TMIIS(ph)PERLDPFADGGK_
SF3B1	Phosphorylation	T142	-0.892	-2.157	_TMIIS(ph)PERLDPFADGGKT(ph)PDPK_
SF3B1	Phosphorylation	T207	-1.127	-1.868	_WDQTADQT(ph)PGAT(ph)PK_
SF3B1	Phosphorylation	T211	-0.765	-1.099	_WDQTADQT(ph)PGAT(ph)PK_
SF3B1	Phosphorylation	T223	-0.989	-1.111	_LSSWDQAET(ph)PGHTPSLR_
SF3B1	Phosphorylation	T227	-1.216	-0.904	_LSSWDQAETPGHT(ph)PSLR_
SF3B1	Phosphorylation	T235		-1.156	_WDET(ph)PGR_
SF3B1	Phosphorylation	T273	-0.351	-0.627	_GDT(ph)PGHATPGHGGATSSAR_
SF3B1	Phosphorylation	T278	-0.033	-0.482	_GDTPGHAT(ph)PGHGGATSSAR_
SF3B1	Phosphorylation	T303		-1.006	_TERDT(ph)PGHGSGWAETPR_
SF3B1	Phosphorylation	S308	-0.512	-0.240	_DTPGHGS(ph)GWAETPRTDR_
SF3B1	Phosphorylation	T313	-0.638	-0.898	_DTPGHGSGWAET(ph)PR_
SF3B1	Phosphorylation	T326	-1.194	-0.893	_GGDSIGET(ph)PT(ph)PGASK_
SF3B1	Phosphorylation	T328	-1.194	-1.428	_GGDSIGET(ph)PT(ph)PGASK_
SF3B1	Ubiquitylation	K333	-1.360		_GGDSIGETPTPGASK(gl)R_
SF3B1	Phosphorylation	S349		-0.947	_SRWDETPASQMGGS(ph)TPVLTPGK_
SF3B1	Phosphorylation	T350	-0.911	-0.979	_SRWDETPASQMGGST(ph)PVLTPGK_
SF3B1	Phosphorylation	T432	-1.068	-1.330	_KLT(ph)ATPTPLGGM(ox)TGFHM(ox)QTEDR_
SF3B1	Phosphorylation	T434	-0.601	-1.311	_LTAT(ph)PTPLGGMTGFHMQTEDR_
SF3B1	Phosphorylation	S488	0.467	-0.012	_LLVDVDESTLS(ph)PEEQKER_
SF3B1	Ubiquitylation	K793	0.904	0.908	_VVK(gl)QCCGTDGVEANYIK_
SF3B1	Ubiquitylation	K963	1.062	0.292	_TAVVMK(gl)TCQEEK_
SF3B1	Ubiquitylation	K1014		-0.389	_MTPPIK(gl)DLLPR_
SF3B1	Ubiquitylation	K1025		0.848	_LTPILK(gl)NR_
SF3B1	Ubiquitylation	K1292		0.731	_IYNDDK(gl)NTYIR_
SMAD2	Phosphorylation	T8	-0.896	-0.885	_(ac)SSILPFT(ph)PPVVK_
SMAD2	Ubiquitylation	K13	-0.058		_(ac)SSILPFTPPVVK(gl)R_
TGFBR1	Ubiquitylation	K449	-0.991		_VVCEQK(gl)LRPNIPNR_
TGFBR1	Ubiquitylation	K502	0.553	0.430	_TLSQLSQQEGIK(gl)M_
VANGL2	Ubiquitylation	K379	0.582		_LQEEEQK(gl)NPR_
WNT5A	Ubiquitylation	K268		-0.304	_VGDALK(gl)EK_
YY1	Phosphorylation	S247	0.269	0.058	_DIDHETVVEEQIIGENS(ph)PPDYSEYMTGK_
YY1	Ubiquitylation	K301	0.655	0.006	_TIACPHK(gl)GCTK_
YY1	Ubiquitylation	K339	0.205		_AFVESSK(gl)LKR_