bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: HOXC9

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
HOXC9 0 2.569 0.260 -0.820
HOXC9 0 2.569 0.260 -0.820 0.888 0.311 -0.017

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
HOXC9 Phosphorylation S162 0.747 0.640 _APQTLPS(ph)PEADALAGSK_

Background Information for HOXC9:


Pubmed-HOXC9 »
Uniprot-HOXC9 »
Biogrid-HOXC9 »
ProteomicsDB-HOXC9 »

Tumorportal-HOXC9 »
COSMIC-HOXC9 »
GenomeRNAi-HOXC9 »
Genecards-HOXC9


Protein-protein Interactions for HOXC9
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait ARIH1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait HOXC9 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait MAPK14 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait PIGT Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in HOXC9
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Homeobox_dom IPR001356 0.63
Category members Homeobox_metazoa IPR020479 0.28
Category members Hox9_activation_N IPR006711 0
Category members Homeodomain-like IPR009057 0
Category members Homeobox_Hox9 IPR017112 0


Protein complexes (CORUM database) featuring HOXC9
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring HOXC9
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0003677 DNA binding Database 1.53
Category members GO Category GO:0006351 transcription, DNA-templated Database 1.07
Category members GO Category GO:0003700 sequence-specific DNA binding transcription factor activity Database 0.63
Category members GO Category GO:0043565 sequence-specific DNA binding Database 0.18
Category members GO Category GO:0009952 anterior/posterior pattern specification Database 0.06
Category members GO Category GO:0048704 embryonic skeletal system morphogenesis Database 0
Category members GO Category GO:0006355 regulation of transcription, DNA-dependent Database 0
Category members GO Category GO:0048706 embryonic skeletal system development Database 0


.

© Copyright Svejstrup Laboratory 2015