RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
POU2F1	2	-0.480	0.830
PBX2	2	-0.170	0.670	-0.186		-0.124
PITX1	1	3.150	-0.920
HOXA13	1	-1.850	3.840		-0.027	0.427
HOXA13	1	-1.850	3.840	-1.413				0.651
HOXB6	1	0.140	-0.270
MSX2	1	-0.260	0.240
ZFHX2	1	-1.110	2.690				-0.450	0.018
POU2F3	1	-0.780	0.990
HMBOX1	1	0.610	-0.730				4.294
PKNOX1	1	-1.500	2.500
PKNOX1	1	-1.500	2.500
ZHX1	1	-1.880	2.810		-0.193	0.827		-1.444
HOXB6	1	0.140	-0.270			0.888	0.311	-0.017
HOXC6	1	2.050	-1.290			0.888	0.311	-0.017
POU3F1	1	-1.360	2.530
HOXA11	0	-0.050	0.240
DLX6	0	0.390	-0.840
DLX6	0	0.640	-0.810
DLX6	0	0.390	-0.840		-1.286	0.204
DLX6	0	0.640	-0.810		-1.286	0.204
ZFHX4	0	0.080	-0.340				-0.450	0.018
SIX4	0	-0.720	1.600
ADNP	0	0.210	-0.810	-0.684	0.083	0.289	0.229	0.140
ADNP2	0	0.130	0.020				0.959	0.001
DLX5	0	-0.590	0.650		-1.286	0.204
HOXA5	0	0.030	-0.190					-0.887
CUX2	0	0.330	-0.050
DLX2	0	-0.930	1.950		-1.286	0.204
SATB2	0	0.770	-0.700	-0.631	-0.952	-0.199	0.105	0.377
TSHZ3	0	0.170	0.210
HOXC13	0	0.030	0.890		-0.027	0.427
HOXC13	0	0.030	0.890	-1.413				0.651
NKX2-4	0				0.174	0.236
NKX2-4	0						-0.123
NKX2-4	0
SIX1	0	1.730	-1.230		-0.334	0.495
HOXD13	0	1.230	-1.330		-0.027	0.427
HOXD13	0	1.230	-1.330					-0.993
MNX1	0	-1.070	1.390
NKX2-1	0	-0.730	0.480		0.174	0.236
NKX2-1	0	-0.730	0.480				-0.123
ZFHX3	0	-0.200	0.390				-0.903	-0.394
CERS2	0	0.540	-0.590				0.176	0.286
DLX1	0	-1.110	0.780
DLX1	0	-1.110	0.780		-1.286	0.204
ZEB1	0	0.640	-0.450
ZEB1	0	0.640	-0.450
ISL2	0	0.170	-0.540			0.032
MSX1	0	0.420	-0.450
PBX3	0	-0.340	0.140
ZEB2	0	-0.420	1.170		0.364	0.973
SIX2	0	1.040	-0.950		-0.334	0.495
HOXA5	0	0.030	-0.190			0.888	0.311	-0.017
HOXA6	0					0.888	0.311	-0.017
HOXA7	0	-0.250	0.230			0.888	0.311	-0.017
HOXB5	0	-0.180	0.680			0.888	0.311	-0.017
HOXB8	0					0.888	0.311	-0.017
HOXB9	0	0.790	-0.720			0.888	0.311	-0.017
HOXC5	0	0.530	-0.790			0.888	0.311	-0.017
HOXC8	0	-0.250	-0.230			0.888	0.311	-0.017
HOXC9	0	0.260	-0.820			0.888	0.311	-0.017
HOXD9	0	-1.260	1.800			0.888	0.311	-0.017
ZHX3	0	-0.610	1.630
SIX5	0	1.550	-0.970	-0.213
ZHX2	0	-0.240	0.680		-0.053	0.857
ALX1	0	0.810	-0.890
HOXC9	0	0.260	-0.820
HOXC10	0	-1.330	1.990
SATB1	0	1.140	-1.300		-0.866	0.000
NKX2-5	0	-0.150	1.230		0.174	0.236
NKX2-5	0	-0.150	1.230				-0.123
POU3F2	0	-0.280	0.600
POU3F2	0	-0.280	0.600
PBX1	0	-0.600	0.280
PBX1	0	-0.600	0.280	-0.186		-0.124
POU3F4	0	0.700	-0.280
POU3F3	0	-0.340	0.810

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ADNP	Phosphorylation	S98	0.588	0.952	_NVHS(ph)EDFENR_
ADNP	Phosphorylation	S709	-0.391	-0.636	_LNQS(ph)PSLAPVK_
ADNP	Ubiquitylation	K716	-1.904		_LNQSPSLAPVK(gl)R_
ADNP	Ubiquitylation	K807	1.120	0.315	_SDIASHFSNK(gl)R_
ADNP	Phosphorylation	S953		0.667	_LMHNAS(ph)DSEVDQDDVVEWK_
ADNP	Phosphorylation	S955		0.656	_LMHNAS(ph)DSEVDQDDVVEWK_
ADNP	Phosphorylation	S1071		-0.389	_LSNPQIEWQNSTIDS(ph)EDGEQFDNMTDGVAEPMHGSLAGVK_
ADNP2	Ubiquitylation	K872	-1.370	-1.320	_VRPQAEGTPGSTGK(gl)R_
ALX1	Phosphorylation	T68	0.678	0.289	_T(ph)SPCQDSSVNYGITK_
ALX1	Phosphorylation	S69	0.678	0.484	_T(ph)SPCQDSSVNYGITK_
CERS2	Ubiquitylation	K96	-0.388	1.140	_QPK(gl)QVEVELLSR_
CERS2	Ubiquitylation	K131		-0.387	_NQDRPSLLK(gl)K_
CERS2	Ubiquitylation	K132	-0.187	0.184	_NQDRPSLLKK(gl)_
CUX2	Ubiquitylation	K568	-0.653		_EQLLK(gl)HNIGQR_
DLX1	Phosphorylation	S9	0.286	0.248	_(ac)M(ox)TM(ox)TTM(ox)PES(ph)LNSPVSGK_
DLX1	Phosphorylation	S225		-0.821	_SGEIPSEQHPGAS(ph)AS(ph)PPCASPPVSAPASWDFGVPQR_
DLX1	Phosphorylation	S227		-1.137	_SGEIPSEQHPGASAS(ph)PPCAS(ph)PPVSAPASWDFGVPQR_
DLX1	Phosphorylation	S232		-1.137	_SGEIPSEQHPGASAS(ph)PPCAS(ph)PPVSAPASWDFGVPQR_
DLX2	Phosphorylation	S225		-0.821	_SGEIPSEQHPGAS(ph)AS(ph)PPCASPPVSAPASWDFGVPQR_
DLX2	Phosphorylation	S227		-1.137	_SGEIPSEQHPGASAS(ph)PPCAS(ph)PPVSAPASWDFGVPQR_
DLX2	Phosphorylation	S232		-1.137	_SGEIPSEQHPGASAS(ph)PPCAS(ph)PPVSAPASWDFGVPQR_
DLX5	Phosphorylation	S225		-0.821	_SGEIPSEQHPGAS(ph)AS(ph)PPCASPPVSAPASWDFGVPQR_
DLX5	Phosphorylation	S227		-1.137	_SGEIPSEQHPGASAS(ph)PPCAS(ph)PPVSAPASWDFGVPQR_
DLX5	Phosphorylation	S232		-1.137	_SGEIPSEQHPGASAS(ph)PPCAS(ph)PPVSAPASWDFGVPQR_
DLX6	Phosphorylation	S130	-1.478	-1.295	_S(ph)PALPPVWDVSASAK_
DLX6	Phosphorylation	S225		-0.821	_SGEIPSEQHPGAS(ph)AS(ph)PPCASPPVSAPASWDFGVPQR_
DLX6	Phosphorylation	S227		-1.137	_SGEIPSEQHPGASAS(ph)PPCAS(ph)PPVSAPASWDFGVPQR_
DLX6	Phosphorylation	S232		-1.137	_SGEIPSEQHPGASAS(ph)PPCAS(ph)PPVSAPASWDFGVPQR_
HMBOX1	Phosphorylation	S171	1.047	1.106	_RDSS(ph)VIKEEIK_
HOXA11	Ubiquitylation	K72		-0.905	_EYAIEPATK(gl)WHPR_
HOXA11	Phosphorylation	S84	0.313	0.946	_GNLAHCYS(ph)AEELVHR_
HOXA13	Ubiquitylation	K335	0.431	0.162	_VQLK(gl)ELER_
HOXB6	Phosphorylation	S209		1.246	_LLS(ph)ASQLSAEEEEEKQAE_
HOXB6	Phosphorylation	S211		1.067	_LLSAS(ph)QLSAEEEEEKQAE_
HOXB6	Phosphorylation	S214	1.598	1.416	_LLSASQLS(ph)AEEEEEKQAE_
HOXC10	Phosphorylation	S226		0.358	_TEQSLAGPKGS(ph)PSESEKER_
HOXC13	Ubiquitylation	K335	0.431	0.162	_VQLK(gl)ELER_
HOXC9	Phosphorylation	S162	0.747	0.640	_APQTLPS(ph)PEADALAGSK_
HOXD13	Ubiquitylation	K335	0.431	0.162	_VQLK(gl)ELER_
ISL2	Phosphorylation	S157	-0.640	-0.776	_S(ph)PGPLPGAR_
ISL2	Ubiquitylation	K201	-0.430	-1.275	_TVLNEK(gl)QLHTLR_
ISL2	Phosphorylation	S279	0.101		_TSLQGLTGTPLVAGS(ph)PIR_
MNX1	Phosphorylation	S77	1.417		_LRAES(ph)PSPPR_
MNX1	Ubiquitylation	K240	-0.232	-0.808	_MPDFNSQAQSNLLGK(gl)CR_
MSX1	Phosphorylation	S154		0.148	_RLS(ph)PPACTLR_
MSX2	Phosphorylation	S3	-1.986	-1.774	_(ac)AS(ph)PSKGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEER_
MSX2	Phosphorylation	S5	-1.986		_AS(ph)PS(ph)KGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEER_
MSX2	Phosphorylation	S63		3.351	_EAS(ph)PLPAESASAGATLRPLLLSGHGAR_
MSX2	Phosphorylation	S91	-0.783	-0.727	_EAHS(ph)PGPLVKPFETASVK_
MSX2	Phosphorylation	S123		-0.062	_SENSEDGAAWMQEPGRYS(ph)PPPR_
NKX2-4	Phosphorylation	S271	-1.823	-1.965	_AAQQLQQEGGLGPPPPPPPS(ph)PR_
PBX1	Ubiquitylation	K164		-0.541	_SK(gl)LAQIR_
PBX1	Ubiquitylation	K195	-1.614		_TRPISPK(gl)EIER_
PBX2	Ubiquitylation	K164		-0.541	_SK(gl)LAQIR_
PBX3	Ubiquitylation	K195	-1.614		_TRPISPK(gl)EIER_
PITX1	Ubiquitylation	K5		1.200	_DAFK(gl)GGM(ox)SLER_
PKNOX1	Phosphorylation	S41		-0.871	_TEQDPNCSEPDAEGVS(ph)PPPVESQTPMDVDK_
PKNOX1	Ubiquitylation	K140	0.699	0.969	_VNELCK(gl)DFCSR_
POU2F1	Phosphorylation	S8	1.971	2.219	_(ac)ADGGAAS(ph)QDESSAAAAAAADSR_
POU2F1	Phosphorylation	S408	0.932	1.562	_RTS(ph)IETNIR_
POU2F1	Phosphorylation	S471	-0.483	-0.496	_RINPPSSGGTSSS(ph)PIK_
POU2F3	Phosphorylation	S408	0.932	1.562	_RTS(ph)IETNIR_
POU3F1	Ubiquitylation	K377	0.051	-0.035	_LK(gl)PLLNK_
POU3F2	Phosphorylation	S341	0.357	0.518	_WLEEADSSSGS(ph)PTSIDK_
POU3F2	Ubiquitylation	K377	0.051	-0.035	_LK(gl)PLLNK_
POU3F3	Ubiquitylation	K377	0.051	-0.035	_LK(gl)PLLNK_
POU3F4	Ubiquitylation	K377	0.051	-0.035	_LK(gl)PLLNK_
SATB2	Phosphorylation	S50	-0.357		_SGS(ph)PDVKGPPPVK_
SATB2	Phosphorylation	S623	-2.108	-2.019	_ES(ph)SPPREEAPPPPPPTEDSCAK_
SATB2	Phosphorylation	S624	-2.108	-2.019	_ES(ph)SPPREEAPPPPPPTEDSCAK_
SIX1	Ubiquitylation	K53	0.475		_AK(gl)AVVAFHR_
SIX2	Ubiquitylation	K53	0.475		_AK(gl)AVVAFHR_
SIX4	Phosphorylation	S44	-0.717	-1.599	_EVAGGAAVGLS(ph)PPAPAPFPLEPGDAATAAAR_
TSHZ3	Phosphorylation	S333	0.171		_KASLELELPSS(ph)PDSTGGTPK_
TSHZ3	Phosphorylation	S461		-0.148	_VQSVPLAATTFTSPSNTPAS(ph)ISPK_
TSHZ3	Phosphorylation	S463	-0.740	-0.907	_VQSVPLAATTFTSPSNTPASIS(ph)PK_
ZEB1	Ubiquitylation	K77	0.237		_FTSLK(gl)EHIK_
ZEB1	Ubiquitylation	K398	-0.697	0.131	_SEK(gl)LPEDLTVK_
ZEB1	Phosphorylation	S713	-0.669	-0.753	_NNDQPQSANANEPQDSTVNLQS(ph)PLK_
ZEB1	Phosphorylation	S1025		0.260	_REAEERDS(ph)TEQEEAGPEILSNEHVGAR_
ZEB1	Phosphorylation	T1026		0.260	_REAEERDS(ph)TEQEEAGPEILSNEHVGAR_
ZEB2	Phosphorylation	S1124		0.491	_AYLQSITPQGYSDS(ph)EERESMPR_
ZFHX2	Phosphorylation	S508	0.047	-0.020	_DFPLLNQSIS(ph)PLSSSVLK_
ZFHX2	Phosphorylation	S2769		0.961	_NLLS(ph)PSSFK_
ZFHX3	Phosphorylation	S425	-0.531	-0.563	_TPITSVPLGPLAS(ph)SPTK_
ZFHX4	Phosphorylation	S508	0.047	-0.020	_DFPLLNQSIS(ph)PLSSSVLK_
ZFHX4	Phosphorylation	S2769		0.961	_NLLS(ph)PSSFK_
ZHX1	Phosphorylation	S648	0.113	0.003	_EEAGETS(ph)PADESGAPK_
ZHX3	Phosphorylation	S946	-0.507	-0.518	_VPEASSEPFDTSS(ph)PQAGR_