RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
USP28	2	1.150	-0.550
USP48	2	1.640	-0.790	-1.135
USP48	2	1.640	-0.790		0.092	0.098	0.144	0.339
USP24	2	-0.540	0.660	2.166			-0.039	0.044
USP47	2	0.370	-0.540	1.392
USP47	2	0.370	-0.540
USP36	1	-0.180	0.260				0.221	0.341
CASP8	1	1.120	-1.090
USP14	1	-0.120	1.090	-0.442			3.486
USP14	1	-0.120	1.090
ALG13	1	0.890	-1.050	1.053	0.029	0.494
ALG13	1	3.500	-1.400	1.053	0.029	0.494
BLMH	1	0.710	-0.440				1.895	-1.446
USP32	1	-0.200	0.170
USP32	1	-0.020	0.150
EIF3F	1	-1.670	2.640	1.038	-0.420	-0.590	-0.064	0.303
EIF3F	1	-1.620	2.560	1.038	-0.420	-0.590	-0.064	0.303
SENP1	0	-1.070	0.900				0.519	0.698
USP11	0	0.840	-0.200	-0.333	0.001	0.704
CAPN15	0	-0.060	0.660
CASP14	0	0.690	0.120					-4.487
CASP2	0	0.980	-1.120
SENP6	0	-0.170	0.120
USP9Y	0	0.000	-0.200	-0.309	0.196	0.205	-0.019	0.128
UCHL3	0	-0.250	0.500				0.854	0.717
USP9X	0	-0.520	0.800	-0.309	0.196	0.205	-0.019	0.128
ATG4C	0	1.830	-1.180
ATG4D	0	-1.190	1.270
USP30	0	-0.560	0.370
ESPL1	0	0.260	0.370
USP15	0	1.570	-0.780
USP15	0	1.570	-0.780	0.925	-0.319	-0.221
SENP7	0	-0.910	0.750
USP8	0	0.830	-0.320
USP3	0	0.220	-0.540
OTULIN	0	-0.520	0.500
OTUD6B	0	0.730	-1.210
SENP3	0	-0.730	0.550				0.242	0.595
CAPN2	0	-1.140	1.400			0.314
CAPN2	0	-1.140	1.400	0.522			0.716	-0.611
OTUD7B	0
SENP2	0	-0.290	0.300
CASP3	0	0.570	-0.390
CASP7	0	0.130	-0.130
USP38	0	-0.060	0.090
USP19	0	-0.550	0.450				-3.664	-0.183
USP7	0	-0.600	0.590
USP7	0	-0.600	0.590	0.789	-0.077	0.319	-0.125	0.108

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ALG13	Ubiquitylation	K68		0.277	_YKDSLK(gl)EDIQK_
ALG13	Ubiquitylation	K94		-0.565	_GK(gl)PLVVVINEK_
ALG13	Ubiquitylation	K137		-0.814	_VLTCPGQAK(gl)SIASAPGK_
ALG13	Phosphorylation	S216		1.020	_S(ph)LNEASMDEYLGSLGLFR_
ALG13	Ubiquitylation	K238		-0.752	_KLTAK(gl)DASCLFR_
ALG13	Ubiquitylation	K263		0.896	_K(gl)ACVSYMR_
ALG13	Ubiquitylation	K386		-0.264	_TAIK(gl)LFR_
ALG13	Ubiquitylation	K411		-0.507	_NNAVTGSEDAHTDYK(gl)SSNQNR_
ALG13	Ubiquitylation	K458		-0.539	_VLK(gl)ALDPEIYR_
ALG13	Ubiquitylation	K482		0.513	_ELQK(gl)SDYMEYAGR_
ALG13	Ubiquitylation	K683		-0.785	_VDFYPGPGK(gl)R_
ATG4C	Ubiquitylation	K403	0.208		_ASEEITK(gl)MLK_
ATG4D	Ubiquitylation	K241		-0.390	_LVELGQSSGK(gl)K_
ATG4D	Ubiquitylation	K242		-0.390	_LVELGQSSGK(gl)K_
ATG4D	Phosphorylation	S468	0.073	0.285	_AKRPSS(ph)EDFVFL_
CAPN15	Ubiquitylation	K47	0.091	0.954	_LSVEEQK(gl)WPCAR_
CAPN15	Ubiquitylation	K293	-0.521	0.688	_LAELLSGK(gl)R_
CAPN15	Ubiquitylation	K348	-1.734	-1.342	_YTPASPSSPDFTTWSCAK(gl)CTLR_
CAPN15	Ubiquitylation	K686		-0.401	_MLSSK(gl)EAGFLMGASCGGGNMK_
CAPN15	Ubiquitylation	K1053		0.569	_K(gl)AAQAFLSDWTASK_
CASP2	Phosphorylation	S340	-0.347	-1.529	_NHAGS(ph)PGCEESDAGKEK_
CASP3	Ubiquitylation	K11	-0.053	-0.687	_(ac)MENTENSVDSK(gl)SIK_
CASP3	Ubiquitylation	K14	-0.455	-0.687	_SIK(gl)NLEPK_
CASP3	Ubiquitylation	K57	-0.304	-1.817	_NFHK(gl)STGMTSR_
CASP3	Ubiquitylation	K82	-0.268	-0.605	_NLK(gl)YEVR_
CASP7	Phosphorylation	S16	0.096	-0.112	_(ac)ADDQGCIEEQGVEDS(ph)ANEDSVDAKPDR_
CASP7	Ubiquitylation	K80	0.580	-0.044	_NFDK(gl)VTGMGVR_
CASP8	Ubiquitylation	K183	1.917		_IINDYEEFSK(gl)ER_
CASP8	Ubiquitylation	K461		-2.031	_NMGK(gl)QMPQPTFTLR_
EIF3F	Phosphorylation	S273	0.348	0.330	_TCFS(ph)PNR_
ESPL1	Ubiquitylation	K64		-0.593	_ACNQQLTAK(gl)LACPR_
ESPL1	Ubiquitylation	K515		-0.310	_LQVESLK(gl)K_
ESPL1	Ubiquitylation	K516		-0.310	_LQVESLK(gl)K_
ESPL1	Ubiquitylation	K567		-1.164	_AGDKELQLK(gl)TLR_
ESPL1	Ubiquitylation	K593		-0.279	_EELQAYK(gl)AVR_
ESPL1	Ubiquitylation	K760		-0.694	_ELLTK(gl)GQAPAVR_
ESPL1	Phosphorylation	S1126	-1.840	-1.996	_EPGPIAPSTNSS(ph)PVLK_
ESPL1	Ubiquitylation	K1252		-0.245	_VLQSGLK(gl)FVAAR_
ESPL1	Ubiquitylation	K1832	-1.682	-1.025	_LQELLQDCGWK(gl)YPDR_
OTUD6B	Ubiquitylation	K113	-0.211		_AALEK(gl)EREER_
OTUD7B	Ubiquitylation	K93	0.152	0.969	_QDDIVQEK(gl)R_
OTUD7B	Phosphorylation	S100	0.815	0.868	_GIS(ph)HASSSIVSLAR_
OTUD7B	Phosphorylation	S449		-0.896	_WIPLSSDAQAPLAQPES(ph)PTASAGDEPR_
OTUD7B	Ubiquitylation	K644	0.103	0.509	_FLAEQK(gl)QK_
OTULIN	Ubiquitylation	K64	-0.645		_AADEIEK(gl)EKELLIHER_
OTULIN	Ubiquitylation	K66	-0.645		_AADEIEK(gl)EKELLIHER_
OTULIN	Ubiquitylation	K94	-0.031	-0.564	_LSVAPEMDIMDYCKK(gl)_
SENP1	Ubiquitylation	K231	-0.099		_NTLK(gl)DSLFK_
SENP2	Phosphorylation	S107	0.949	0.929	_RRS(ph)DSTLFSTVDTDEIPAK_
SENP2	Phosphorylation	S419	1.231	0.883	_KVS(ph)IIETK_
SENP3	Phosphorylation	S169	-0.526	-0.554	_NHLS(ph)PQQGGATPQVPSPCCR_
SENP3	Phosphorylation	S181	1.061	-0.600	_NHLSPQQGGATPQVPS(ph)PCCR_
SENP3	Phosphorylation	S212		-1.048	_LGLLGALMAEDGVRGS(ph)PPVPSGPPMEEDGLR_
SENP3	Ubiquitylation	K505		-0.150	_YLQAEAVK(gl)K_
SENP3	Ubiquitylation	K506		-0.150	_YLQAEAVK(gl)K_
SENP6	Phosphorylation	S350		-0.756	_ES(ph)ISPQPADSACSSPAPSTGK_
SENP6	Phosphorylation	S352	-0.890	-0.588	_ESIS(ph)PQPADSACSSPAPSTGK_
SENP6	Phosphorylation	S362	-0.652	-0.962	_ESIS(ph)PQPADSACSS(ph)PAPSTGK_
SENP7	Phosphorylation	S11	0.219	0.285	_RPS(ph)SSEIITEGK_
USP11	Ubiquitylation	K245	-0.175	-0.284	_LWAK(gl)NSEGSLDR_
USP11	Ubiquitylation	K385	-0.348		_SIVPHVFKNK(gl)_
USP11	Phosphorylation	S733	0.908	0.540	_TTS(ph)PEEVHAQPYIAIDWEPEMK_
USP11	Ubiquitylation	K776	-0.145	0.017	_HDCVGYVM(ox)KK(gl)_
USP11	Ubiquitylation	K835	0.273	0.465	_FSYTK(gl)FSR_
USP14	Ubiquitylation	K54	-0.506	0.880	_GGTLK(gl)DDDWGNIK_
USP14	Ubiquitylation	K62	-1.110	0.317	_GGTLKDDDWGNIK(gl)IK_
USP14	Ubiquitylation	K130	-0.994	-0.631	_SVPELK(gl)DALKR_
USP14	Ubiquitylation	K134		-0.783	_SVPELKDALK(gl)R_
USP14	Phosphorylation	S143	0.551	0.678	_AS(ph)GEM(ox)ASAQYITAALR_
USP14	Ubiquitylation	K224	-1.522	-1.122	_LEAIEDDSVK(gl)ETDSSSASAATPSK_
USP14	Ubiquitylation	K239	-0.850		_LEAIEDDSVKETDSSSASAATPSKK(gl)_
USP14	Ubiquitylation	K291	-0.258	-0.581	_YLFTGLK(gl)_
USP14	Ubiquitylation	K300	-0.534	-1.071	_LQEEITK(gl)QSPTLQR_
USP14	Ubiquitylation	K313	-0.672	-0.343	_NALYIK(gl)SSK_
USP14	Ubiquitylation	K336	1.000		_FFYK(gl)EKESVNAK_
USP14	Ubiquitylation	K342	-0.361		_ESVNAK(gl)VLK_
USP14	Phosphorylation	S389	-0.018		_VNQQPNTS(ph)DKKSSPQK_
USP14	Phosphorylation	S394		0.259	_VNQQPNTSDKKSS(ph)PQK_
USP14	Ubiquitylation	K441	0.293	-0.492	_SSSSGHYVSWVK(gl)R_
USP15	Phosphorylation	S225	-0.837		_GPS(ph)TPKKPLEQSC_
USP15	Phosphorylation	T226	-1.049	-0.318	_GPST(ph)PKKPLEQSC_
USP15	Phosphorylation	S229	0.423	0.578	_S(ph)PGASNFSTLPK_
USP24	Phosphorylation	S63	-1.480		_NDINEAVALLTNERPGLDYGGYEPM(ox)DSGGGPS(ph)PGPGGGPR_
USP24	Ubiquitylation	K408		0.488	_MNSLK(gl)EVTK_
USP24	Ubiquitylation	K421	1.279	1.285	_LIEDSTLSK(gl)SVK_
USP24	Ubiquitylation	K424		1.560	_LIEDSTLSKSVK(gl)_
USP24	Ubiquitylation	K648	0.827	1.251	_SFIK(gl)QTYQK_
USP24	Ubiquitylation	K656	1.152	1.036	_QDK(gl)SIIQDLKK_
USP24	Phosphorylation	S1141	0.210	0.303	_TLLSESSSQSSKS(ph)PSLSSK_
USP24	Phosphorylation	S1143	0.345	0.561	_TLLSESSSQSSKSPS(ph)LSSK_
USP24	Ubiquitylation	K1292	0.246	0.175	_QMSLCGTPEK(gl)SSYR_
USP24	Phosphorylation	S1610		0.109	_IILNS(ph)HSPAGSAAISQQDFHPK_
USP24	Phosphorylation	S1612	-0.039	0.157	_IILNSHS(ph)PAGSAAISQQDFHPK_
USP24	Ubiquitylation	K1764	0.706	1.193	_MWNK(gl)ELYVR_
USP24	Ubiquitylation	K1899	0.979		_SIK(gl)YDEQIR_
USP24	Phosphorylation	S2047	-0.280	-0.025	_VSDQNS(ph)PVLPK_
USP24	Phosphorylation	T2559	0.619	0.701	_T(ph)ISAQDTLAYATALLNEK_
USP24	Phosphorylation	S2561	0.945	0.882	_TIS(ph)AQDTLAYATALLNEK_
USP24	Phosphorylation	S2604		1.070	_HLQQGSES(ph)PMMIGELR_
USP28	Phosphorylation	S495	2.593	2.418	_ESTSTESSS(ph)QDVESTFSSPEDSLPK_
USP28	Phosphorylation	S1053	-0.658	-0.698	_EPPTIRPNS(ph)PYDLCSR_
USP3	Ubiquitylation	K354	-0.895		_SK(gl)NQENGPVCSLR_
USP3	Ubiquitylation	K423		-0.875	_NK(gl)VDTYVEFPLR_
USP30	Ubiquitylation	K289		-0.732	_DVVCDNCTK(gl)IEAK_
USP30	Ubiquitylation	K338	0.715		_LSWSSHGTPLK(gl)R_
USP32	Phosphorylation	T1326	0.843	-0.138	_DPALCQHKPLT(ph)PQGDELSEPR_
USP32	Phosphorylation	S1422	-0.094		_LSS(ph)SKENLDASK_
USP32	Phosphorylation	S1423	-1.950	2.890	_LSSS(ph)KENLDASK_
USP36	Ubiquitylation	K338	0.690	0.945	_FANFSGGK(gl)ITK_
USP36	Ubiquitylation	K341		0.923	_FANFSGGKITK(gl)_
USP36	Phosphorylation	T581		0.384	_DVVLST(ph)SPK_
USP36	Phosphorylation	S582	-0.208	0.145	_DVVLSTS(ph)PK_
USP36	Phosphorylation	S713		1.535	_ATGNDLRPPPPS(ph)PSSDLTHPMK_
USP36	Phosphorylation	S952	-1.261	-0.561	_HSCSPMGDGDPEAMEES(ph)PR_
USP38	Ubiquitylation	K263		-0.259	_SLTTDPNVK(gl)DASMTQALCR_
USP38	Ubiquitylation	K773	-0.081		_FSYDQK(gl)YHVR_
USP47	Phosphorylation	S832	0.001	-0.284	_LFVLLPEQS(ph)PVSYSK_
USP47	Phosphorylation	S910	1.689	2.323	_STETSDFENIES(ph)PLNER_
USP47	Phosphorylation	T932		0.805	_ELEQHIQT(ph)SDPENFQSEER_
USP47	Phosphorylation	S933	0.302	0.148	_ELEQHIQTS(ph)DPENFQSEER_
USP48	Ubiquitylation	K9	-0.077	-0.446	_LQLEK(gl)AAWR_
USP48	Ubiquitylation	K231	0.479	-0.168	_ESK(gl)LLSK_
USP48	Ubiquitylation	K258	1.357		_QLTDCISEFLK(gl)EEK_
USP48	Ubiquitylation	K276		0.406	_YFCENCQSK(gl)QNATR_
USP48	Ubiquitylation	K550	2.800	3.226	_LTVK(gl)ALCK_
USP48	Ubiquitylation	K554		1.825	_ALCK(gl)ECVVER_
USP48	Ubiquitylation	K586	1.311	0.666	_AAVK(gl)GSDGFWVGK_
USP48	Ubiquitylation	K681	0.985	0.290	_LVSK(gl)EAWSK_
USP48	Ubiquitylation	K701	0.362	0.328	_APEFPSYK(gl)ECCSQCK_
USP48	Ubiquitylation	K708	0.593	1.125	_ECCSQCK(gl)ILER_
USP7	Phosphorylation	S18	-0.616	-0.581	_AGEQQLS(ph)EPEDM(ox)EM(ox)EAGDTDDPPR_
USP7	Ubiquitylation	K158	-0.447	0.111	_IINYRDDEK(gl)SFSR_
USP7	Ubiquitylation	K264	-1.350		_AVYMMPTEGDDSSK(gl)SVPLALQR_
USP7	Ubiquitylation	K430	0.500		_FMYDPQTDQNIK(gl)INDR_
USP7	Ubiquitylation	K605		1.273	_YTVFK(gl)VLK_
USP7	Ubiquitylation	K834	-0.068	0.064	_MNYFQVAK(gl)TVAQR_
USP7	Ubiquitylation	K879	-0.271		_DLLQFFK(gl)PR_
USP7	Ubiquitylation	K892	0.402	0.347	_KLYYQQLK(gl)MK_
USP7	Ubiquitylation	K894	0.380		_MK(gl)ITDFENRR_
USP7	Ubiquitylation	K944	0.512	0.702	_KAVELGEK(gl)ASGK_
USP7	Ubiquitylation	K1106	0.275	0.509	_YTYLEK(gl)AIK_
USP8	Phosphorylation	S392	-0.015	0.284	_SDVS(ph)PIIQPVPSIK_
USP8	Phosphorylation	T577	-0.048	0.069	_RCPT(ph)PEIQKK_
USP8	Phosphorylation	S716	0.750	0.023	_S(ph)YSSPDITQAIQEEEKR_
USP8	Phosphorylation	S718	0.338	0.273	_SYS(ph)SPDITQAIQEEEKR_
USP9X	Ubiquitylation	K112	0.155	0.666	_GLDVK(gl)SEACQR_
USP9X	Ubiquitylation	K315		1.100	_SLK(gl)NLASR_
USP9X	Ubiquitylation	K1045		0.212	_VLMK(gl)LMPPDSTTIEK_
USP9X	Ubiquitylation	K1445	-1.104	-0.276	_ELLAFQTSEK(gl)K_
USP9X	Ubiquitylation	K1446	-1.104	0.061	_ELLAFQTSEKK(gl)_
USP9X	Ubiquitylation	K1627	-1.695		_DDVFGYPQQFEDK(gl)PALSK_
USP9X	Ubiquitylation	K1637	-0.957		_TEDRK(gl)EYNIGVLR_
USP9X	Ubiquitylation	K1798		-1.085	_LPPVLAIQLK(gl)R_
USP9X	Ubiquitylation	K2301	0.210	0.500	_IIEDCSNSEETVK(gl)LLR_
USP9X	Ubiquitylation	K2480	-0.335		_ACELCPEEVKK(gl)_
USP9X	Phosphorylation	S2563	-0.389	-0.274	_AQENYEGSEEVS(ph)PPQTK_
USP9Y	Ubiquitylation	K112	0.155	0.666	_GLDVK(gl)SEACQR_
USP9Y	Ubiquitylation	K315		1.100	_SLK(gl)NLASR_
USP9Y	Ubiquitylation	K1045		0.212	_VLMK(gl)LMPPDSTTIEK_
USP9Y	Ubiquitylation	K1445	-1.104	-0.276	_ELLAFQTSEK(gl)K_
USP9Y	Ubiquitylation	K1446	-1.104	0.061	_ELLAFQTSEKK(gl)_
USP9Y	Ubiquitylation	K1627	-1.695		_DDVFGYPQQFEDK(gl)PALSK_
USP9Y	Ubiquitylation	K1637	-0.957		_TEDRK(gl)EYNIGVLR_
USP9Y	Ubiquitylation	K1798		-1.085	_LPPVLAIQLK(gl)R_
USP9Y	Ubiquitylation	K2301	0.210	0.500	_IIEDCSNSEETVK(gl)LLR_
USP9Y	Ubiquitylation	K2480	-0.335		_ACELCPEEVKK(gl)_
USP9Y	Phosphorylation	S2563	-0.389	-0.274	_AQENYEGSEEVS(ph)PPQTK_