RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
IFT80	1	-1.610	2.740
SMO	1	-0.690	1.110		1.532
LDHA	1	0.290	0.240	0.385	2.314	-1.710	0.736	-1.948
ANXA1	1	1.050	-0.850				1.883
ADCY3	1	-0.850	1.180
PKD1	0	-0.900	0.980
OFD1	0	1.920	-1.210				-0.269
PKLR	0	1.140	-1.050	0.017	1.398	-1.294	0.074	-0.041
PKM	0	1.170	-0.120	0.017	1.398	-1.294	0.074	-0.041
CFAP20	0	-0.450	0.720	-0.093			0.432
PRKACA	0	0.380	-0.680		-1.005	-0.697	0.234	0.487
PTPN23	0	0.800	-0.570
DLD	0	-0.420	0.270	1.380	0.780	-1.052	0.824	0.231
DFNB31	0	-0.300	0.030
ATP6V1D	0	1.770	-0.910				0.833	0.523
CLUAP1	0	0.190	-0.080
TUBB4A	0	0.140	-0.670	-0.698			0.338	0.436
TUBB4B	0	0.350	-1.000	-0.837	-0.149	0.035
GAPDHS	0	0.660	-0.870	0.283	0.870	0.760	-0.040	-0.473
CAV1	0	1.150	-0.150
CAV1	0	1.150	-0.150
CAV1	0	1.150	-0.150
GLI3	0	-0.980	1.650
SUFU	0	1.190	-0.990
CEP164	0
IFT57	0	-0.190	0.050
ALMS1	0	0.100	-0.080
WDR11	0	-0.050	0.340			-0.280		0.624
CEP250	0	-0.780	0.750	-0.268
WDR60	0	1.020	-0.380
TUBG1	0	-0.710	1.260	-0.141	-0.630	-0.211	-0.844	-0.821
ODF2	0	-0.890	1.110
IFT172	0	0.030	-0.130
TBC1D32	0	1.980	-0.240
SLC25A31	0	0.660	-0.130				0.878	0.610
FAM49B	0	0.630	-0.640	-0.383				-0.213
FAM49B	0	0.630	-0.640
CCSAP	0	-0.120	0.870
RPGR	0	0.230	0.370
CDK20	0	-0.940	0.420
ATP2B2	0	1.540	-0.900				0.593	0.487
WDR19	0	-0.150	-0.220
APOA1BP	0	-0.490	0.550
ANKS6	0	0.580	-0.490
TTC8	0	0.800	-1.070
KIF7	0	-0.700	0.600				0.688
KIF7	0	0.280	-0.500				0.688
RAB8A	0	-0.300	0.550				0.568	0.278
RAB8A	0	-0.300	0.550		1.641	-1.484	0.560	0.491
ARL13B	0	-1.420	2.270
ADCY6	0	-0.720	0.740
BBS10	0	-0.750	1.270
DNAH14	0	0.370	-0.440
DNAH14	0	1.180	-0.480
IFT140	0	0.160	0.210
TTC30A	0	-0.580	1.990
TTC30A	0	-0.050	0.340

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ADCY3	Ubiquitylation	K406	-0.885		_TK(gl)TGVDMR_
ADCY3	Ubiquitylation	K628		0.051	_YSVEK(gl)EK_
ADCY3	Ubiquitylation	K879	0.818	2.820	_IEVHDQK(gl)ER_
ADCY3	Ubiquitylation	K1047		-1.036	_IGMNK(gl)GGVLAGVIGAR_
ADCY6	Phosphorylation	S54	-1.434	-1.374	_DAEPPS(ph)PTPAGPPR_
ADCY6	Ubiquitylation	K80	0.473	0.937	_GK(gl)ELGLR_
ADCY6	Ubiquitylation	K568	1.007	0.799	_AMLAK(gl)LQR_
ADCY6	Phosphorylation	S576		-0.020	_ANS(ph)MEGLMPR_
ALMS1	Ubiquitylation	K4131	-6.338		_RIYEQLPEVQKK(gl)R_
ANKS6	Phosphorylation	S734	-0.445		_STS(ph)PTLTPSPSPK_
APOA1BP	Ubiquitylation	K288		-0.764	_FVPPALEK(gl)K_
APOA1BP	Ubiquitylation	K289	-1.396	-0.764	_FVPPALEKK(gl)_
ARL13B	Ubiquitylation	K57	0.070		_GIQGEYPEDVAPTVGFSK(gl)INLR_
ATP2B2	Ubiquitylation	K15	1.343		_(ac)GDMANNSVAYSGVK(gl)NSLK_
ATP2B2	Phosphorylation	S17	0.515	0.902	_NS(ph)LKEANHDGDFGITLAELR_
ATP2B2	Ubiquitylation	K19	1.343		_(ac)GDMANNSVAYSGVK(gl)NSLK_
ATP2B2	Ubiquitylation	K48	1.326		_K(gl)IQESYGDVYGICTK_
ATP2B2	Ubiquitylation	K62	0.733		_IQESYGDVYGICTK(gl)LK_
ATP2B2	Ubiquitylation	K64	0.642	0.801	_LK(gl)TSPNEGLSGNPADLER_
ATP2B2	Ubiquitylation	K193	-0.102	0.773	_IEQEQK(gl)FTVIR_
ATP2B2	Ubiquitylation	K365		0.997	_SVLQGK(gl)LTK_
ATP2B2	Ubiquitylation	K747	1.309		_NEK(gl)GEIEQER_
ATP2B2	Ubiquitylation	K773		-0.186	_SSPTDK(gl)HTLVK_
ATP2B2	Ubiquitylation	K807	0.010	1.083	_QVVAVTGDGTNDGPALKK(gl)_
ATP2B2	Ubiquitylation	K921	-0.811	0.202	_NK(gl)PLISR_
ATP2B2	Phosphorylation	S1177	0.214	0.537	_S(ph)SIHNFM(ox)THPEFR_
ATP2B2	Phosphorylation	S1178	0.214	0.537	_S(ph)SIHNFM(ox)THPEFR_
ATP2B2	Phosphorylation	S1193	-0.342	-0.629	_IEDS(ph)EPHIPLIDDTDAEDDAPTKR_
BBS10	Ubiquitylation	K40	-1.233	0.530	_QVLCTK(gl)PTGEVLLSR_
CAV1	Ubiquitylation	K5	0.591	0.963	_(ac)SGGK(gl)YVDSEGHLYTVPIR_
CAV1	Phosphorylation	S6	0.836	0.688	_(ac)ADELS(ph)EKQVYDAHTK_
CAV1	Ubiquitylation	K8	0.244	0.734	_(ac)ADELSEK(gl)QVYDAHTK_
CAV1	Ubiquitylation	K26	0.724	0.894	_EQGNIYK(gl)PNNK_
CAV1	Ubiquitylation	K30	-0.008	0.317	_EQGNIYKPNNK(gl)AMADELSEK_
CAV1	Ubiquitylation	K39	0.690	1.170	_AMADELSEK(gl)QVYDAHTK_
CAV1	Phosphorylation	S76	0.607	0.527	_AMADELS(ph)EK_
CAV1	Ubiquitylation	K176		-0.259	_INLQK(gl)EI_
CCSAP	Phosphorylation	S145		0.546	_TRETDKS(ph)PTSTEPR_
CDK20	Ubiquitylation	K20		0.300	_IGEGAHGIVFK(gl)AK_
CEP164	Phosphorylation	S246	-1.251	-0.145	_GLEERLS(ph)PPLPHEER_
CEP250	Ubiquitylation	K1254	1.110		_LHQDLWK(gl)TQQTR_
CEP250	Ubiquitylation	K1574	0.155	1.217	_MECQQK(gl)LIK_
CEP250	Phosphorylation	S2229	0.282	0.334	_LHS(ph)PGATSTAELGSR_
CEP250	Phosphorylation	S2322	-0.190		_AAQAGS(ph)LEISK_
CFAP20	Ubiquitylation	K115	0.038	-0.100	_VK(gl)PFICTMPMR_
CFAP20	Ubiquitylation	K192	0.439		_LYLPVQNKAK(gl)_
CLUAP1	Ubiquitylation	K200		-0.151	_EILTQVQKTK(gl)_
DFNB31	Phosphorylation	S243		-1.729	_S(ph)ISPPSGLPQPHGGALR_
DNAH14	Ubiquitylation	K284		-0.892	_YGSSK(gl)IAIQK_
DNAH14	Ubiquitylation	K289		-1.155	_IAIQK(gl)ITLK_
FAM49B	Ubiquitylation	K74		0.025	_EAIQHPADEK(gl)LQEK_
FAM49B	Ubiquitylation	K199	0.031		_MSLFYAEATPMLK(gl)TLSDATTK_
FAM49B	Ubiquitylation	K317	0.605	0.629	_HLNDETTSK(gl)QIK_
GAPDHS	Ubiquitylation	K61	0.521	0.820	_FHGTVK(gl)AENGK_
GAPDHS	Ubiquitylation	K66	-0.023		_FHGTVKAENGK(gl)_
GAPDHS	Ubiquitylation	K86	0.473		_IK(gl)WGDAGAEYVVESTGVFTTMEK_
GAPDHS	Ubiquitylation	K117	1.371		_AGAHLQGGAK(gl)R_
GAPDHS	Ubiquitylation	K145	0.536	0.707	_YDNSLK(gl)IISNASCTTNCLAPLAK_
GAPDHS	Ubiquitylation	K194	0.139	0.426	_TVDGPSGK(gl)LWR_
GAPDHS	Ubiquitylation	K215	0.068	0.425	_GALQNIIPASTGAAK(gl)AVGK_
GAPDHS	Ubiquitylation	K219		0.588	_GALQNIIPASTGAAKAVGK(gl)_
GAPDHS	Ubiquitylation	K254	-0.005		_LEKPAK(gl)YDDIKK_
GAPDHS	Ubiquitylation	K259	-0.052	0.054	_LEKPAKYDDIK(gl)K_
GAPDHS	Ubiquitylation	K260	0.061	-0.269	_LEKPAKYDDIKK(gl)_
GAPDHS	Ubiquitylation	K263	-0.140	0.790	_VVK(gl)QASEGPLK_
GLI3	Phosphorylation	S664	-0.582	-0.252	_S(ph)PGRPTQGALGEQQDLSNTTSK_
IFT140	Ubiquitylation	K188		-0.728	_ALDMFNWKK(gl)_
IFT140	Ubiquitylation	K926		-1.020	_ALSYYEK(gl)SDTHR_
IFT140	Ubiquitylation	K1040		-1.602	_AQAFK(gl)NAIR_
IFT140	Ubiquitylation	K1077		-2.071	_YYEEK(gl)GVQMDR_
IFT140	Ubiquitylation	K1178		-0.698	_MTVAK(gl)DSSDLPEESRR_
IFT140	Ubiquitylation	K1275		0.339	_NIIGFYTK(gl)GR_
IFT172	Ubiquitylation	K656		0.295	_CFSALGQVAK(gl)AR_
IFT172	Ubiquitylation	K696		-0.461	_LAMLEKNYK(gl)_
IFT172	Ubiquitylation	K781		-0.224	_AGLPAK(gl)AAR_
IFT57	Ubiquitylation	K360		-0.753	_AAQAQLSEAK(gl)ER_
IFT80	Ubiquitylation	K665		-0.641	_DLCITSVK(gl)R_
KIF7	Ubiquitylation	K1208		0.476	_YMWINQELK(gl)QK_
LDHA	Ubiquitylation	K14	-1.168		_DQLIYNLLK(gl)EEQTPQNK_
LDHA	Ubiquitylation	K76	0.117	0.016	_TPK(gl)IVSGKDYNVTANSK_
LDHA	Ubiquitylation	K81	-0.222	0.603	_IVSGK(gl)DYNVTANSK_
LDHA	Ubiquitylation	K118	-0.092		_NVNIFK(gl)FIIPNVVK_
LDHA	Ubiquitylation	K126	-1.139	-0.426	_FIIPNVVK(gl)YSPNCK_
LDHA	Ubiquitylation	K317	0.038		_LK(gl)KSADTLWGIQK_
LDHA	Ubiquitylation	K318	-0.423	-0.142	_K(gl)SADTLWGIQK_
ODF2	Ubiquitylation	K295	-1.045		_LMEQQGALLK(gl)R_
OFD1	Ubiquitylation	K218		0.010	_AEMCQK(gl)LK_
OFD1	Ubiquitylation	K256		-0.642	_ACQAK(gl)SEALVLR_
OFD1	Ubiquitylation	K533		-0.930	_ASVK(gl)SLTTQVADLK_
OFD1	Phosphorylation	S669	-0.349	-0.888	_S(ph)PPSLHLLEAFK_
OFD1	Phosphorylation	S735	0.482	-0.458	_RLS(ph)STPLPK_
OFD1	Phosphorylation	S762	-0.735	-0.990	_SHIAS(ph)PSPCPDR_
OFD1	Phosphorylation	S774	-0.145	-0.111	_MPLPS(ph)PTESR_
OFD1	Phosphorylation	S788		-0.298	_HSLSIPPVS(ph)SPPEQK_
OFD1	Phosphorylation	S789		-0.909	_HSLSIPPVSS(ph)PPEQK_
OFD1	Phosphorylation	S899		-0.092	_RQS(ph)NLQEVLER_
PKD1	Phosphorylation	T867		0.841	_GT(ph)YHVRLEVNNTVSGAAAQADVR_
PKLR	Phosphorylation	S37	-0.098	0.015	_LDIDS(ph)PPITAR_
PKLR	Ubiquitylation	K62	0.782	0.248	_SVETLK(gl)EMIK_
PKLR	Ubiquitylation	K66	0.692	1.175	_EMIK(gl)SGMNVAR_
PKLR	Ubiquitylation	K135	0.397		_GSGTAEVELK(gl)K_
PKLR	Ubiquitylation	K136		1.129	_GSGTAEVELKK(gl)_
PKLR	Ubiquitylation	K141	1.121		_GATLK(gl)ITLDNAYMEK_
PKLR	Ubiquitylation	K166	0.555	0.929	_NICK(gl)VVEVGSK_
PKLR	Ubiquitylation	K206	0.325	0.965	_GADFLVTEVENGGSLGSK(gl)K_
PKLR	Ubiquitylation	K207	0.653	1.108	_GADFLVTEVENGGSLGSKK(gl)_
PKLR	Ubiquitylation	K266	1.003	-0.378	_GKNIK(gl)IISK_
PKLR	Ubiquitylation	K270	0.863	-0.154	_IISK(gl)IENHEGVR_
PKLR	Ubiquitylation	K305	-0.028	-0.012	_GDLGIEIPAEK(gl)VFLAQK_
PKLR	Ubiquitylation	K311	0.807	0.083	_VFLAQK(gl)MMIGR_
PKLR	Ubiquitylation	K322	0.128	0.502	_AGK(gl)PVICATQMLESMIK_
PKLR	Ubiquitylation	K433		0.399	_CCSGAIIVLTK(gl)SGR_
PKLR	Ubiquitylation	K498	-0.348	1.499	_VNFAMNVGK(gl)AR_
PKM	Phosphorylation	S37	-0.098	0.015	_LDIDS(ph)PPITAR_
PKM	Ubiquitylation	K62	0.782	0.248	_SVETLK(gl)EMIK_
PKM	Ubiquitylation	K66	0.692	1.175	_EMIK(gl)SGMNVAR_
PKM	Ubiquitylation	K135	0.397		_GSGTAEVELK(gl)K_
PKM	Ubiquitylation	K136		1.129	_GSGTAEVELKK(gl)_
PKM	Ubiquitylation	K141	1.121		_GATLK(gl)ITLDNAYMEK_
PKM	Ubiquitylation	K166	0.555	0.929	_NICK(gl)VVEVGSK_
PKM	Ubiquitylation	K206	0.325	0.965	_GADFLVTEVENGGSLGSK(gl)K_
PKM	Ubiquitylation	K207	0.653	1.108	_GADFLVTEVENGGSLGSKK(gl)_
PKM	Ubiquitylation	K266	1.003	-0.378	_GKNIK(gl)IISK_
PKM	Ubiquitylation	K270	0.863	-0.154	_IISK(gl)IENHEGVR_
PKM	Ubiquitylation	K305	-0.028	-0.012	_GDLGIEIPAEK(gl)VFLAQK_
PKM	Ubiquitylation	K311	0.807	0.083	_VFLAQK(gl)MMIGR_
PKM	Ubiquitylation	K322	0.128	0.502	_AGK(gl)PVICATQMLESMIK_
PKM	Ubiquitylation	K433		0.399	_CCSGAIIVLTK(gl)SGR_
PKM	Ubiquitylation	K498	-0.348	1.499	_VNFAMNVGK(gl)AR_
PRKACA	Ubiquitylation	K30	-0.143		_AKEDFLKK(gl)_
PRKACA	Ubiquitylation	K93	0.839	0.714	_QIEHTLNEK(gl)R_
PTPN23	Ubiquitylation	K215	-0.317		_ISAQVVDYYK(gl)EACR_
PTPN23	Ubiquitylation	K288	-0.754	-0.795	_LAK(gl)GQPDTVQDALR_
PTPN23	Ubiquitylation	K500	-0.529		_EWAK(gl)YMEVHEK_
PTPN23	Phosphorylation	S1123	-1.317	-0.838	_GAAAADLLSSS(ph)PESQHGGTQSPGGGQPLLQPTK_
RAB8A	Ubiquitylation	K3	0.848		_(ac)AK(gl)TYDYLFK_
RAB8A	Ubiquitylation	K138	1.091		_ERGEK(gl)LALDYGIK_
RAB8A	Ubiquitylation	K163		0.199	_LLLGNK(gl)CDMEAK_
RAB8A	Ubiquitylation	K174	-0.188		_VQK(gl)EQADKLAR_
RAB8A	Phosphorylation	S185	0.117	0.264	_KLEGNSPQGS(ph)NQGVK_
RAB8A	Ubiquitylation	K190	-0.573		_LEGNSPQGSNQGVK(gl)ITPDQQK_
RAB8A	Ubiquitylation	K213	-0.059	0.420	_DILLK(gl)SGGR_
RPGR	Phosphorylation	S518	0.494	0.527	_SLKLS(ph)PVQK_
RPGR	Phosphorylation	S961	0.183	0.559	_RVPS(ph)INQK_
SUFU	Ubiquitylation	K303	-0.015		_RLSGK(gl)DTEQIR_
SUFU	Ubiquitylation	K321	-1.917	-1.398	_GLEINSK(gl)PVLPPINPQR_
SUFU	Phosphorylation	S346	0.344	0.498	_KDS(ph)LESDSSTAIIPHELIR_
TBC1D32	Ubiquitylation	K814		-0.815	_NQDLPNK(gl)TEYSLR_
TTC30A	Ubiquitylation	K395		0.180	_LTK(gl)QVQEAR_
TTC30A	Ubiquitylation	K577		-0.214	_SLEPYNKK(gl)_
TTC8	Ubiquitylation	K184		-0.765	_LNLTK(gl)YSQKPK_
TTC8	Ubiquitylation	K259		0.324	_VQIGK(gl)CYYR_
TUBB4B	Ubiquitylation	K58	0.108	0.729	_INVYYNEATGGK(gl)YVPR_
TUBB4B	Ubiquitylation	K252	-0.665	-0.156	_K(gl)LAVNMVPFPR_
TUBB4B	Ubiquitylation	K324	0.436	0.885	_MSMK(gl)EVDEQMLNVQNK_
TUBG1	Ubiquitylation	K287	1.041	-0.053	_K(gl)TTVLDVMR_
TUBG1	Ubiquitylation	K301	0.057	-0.550	_LLQPK(gl)NVMVSTGR_
WDR11	Phosphorylation	S209		-0.307	_VYISSPHSS(ph)PAHNK_
WDR11	Ubiquitylation	K479		-1.049	_MCPPLTTK(gl)NIK_
WDR11	Ubiquitylation	K990	-2.018	-1.106	_VNLQEVK(gl)R_
WDR11	Ubiquitylation	K1097	-1.138	-0.995	_AAWLAK(gl)VR_
WDR19	Ubiquitylation	K475		0.103	_LFPAVDDK(gl)CR_
WDR60	Phosphorylation	S247	0.774	0.853	_SNS(ph)FSDKGEER_
WDR60	Ubiquitylation	K1036		-0.880	_ASGSIDIQHLK(gl)R_