bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: RPGR

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
RPGR 0 1.423 0.230 0.370

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
RPGR Phosphorylation S961 0.183 0.559 _RVPS(ph)INQK_
RPGR Phosphorylation S518 0.494 0.527 _SLKLS(ph)PVQK_

Background Information for RPGR:


Pubmed-RPGR »
Uniprot-RPGR »
Biogrid-RPGR »
ProteomicsDB-RPGR »

Tumorportal-RPGR »
COSMIC-RPGR »
GenomeRNAi-RPGR »
Genecards-RPGR


Protein-protein Interactions for RPGR
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait FAM126A Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait NR2F2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait RPGR Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in RPGR
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members RCC1/BLIP-II IPR009091 0.24
Category members Reg_chr_condens IPR000408 0.23


Protein complexes (CORUM database) featuring RPGR
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring RPGR
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005737 cytoplasm Database 12.81
Category members GO Category GO:0006886 intracellular protein transport Database 2.48
Category members GO Category GO:0005813 centrosome Database 0.75
Category members GO Category GO:0005794 Golgi apparatus Database 0.27
Category members Disease phenotype Achromatopsia Achromatopsia Database 0.11
Category members GO Category GO:0036064 ciliary basal body Database 0.05
Category members Disease phenotype Cone_rod_dystrophy Cone rod dystrophy Database 0
Category members Disease phenotype Primary_ciliary_dyskinesia Primary ciliary dyskinesia Database 0
Category members Disease phenotype Retinitis_pigmentosa Retinitis pigmentosa Database 0
Category members GO Category GO:0001750 photoreceptor outer segment Database 0
Category members GO Category GO:0005085 guanyl-nucleotide exchange factor activity Database 0
Category members GO Category GO:0005929 cilium Database 0
Category members GO Category GO:0007601 visual perception Database 0
Category members GO Category GO:0036126 sperm flagellum Database 0
Category members GO Category GO:0042073 intraciliary transport Database 0
Category members GO Category GO:0042384 cilium assembly Database 0
Category members GO Category GO:0042462 eye photoreceptor cell development Database 0
Category members GO Category GO:0050896 response to stimulus Database 0


.

© Copyright Svejstrup Laboratory 2015