bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: IFT172

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
IFT172 0 0.295 0.030 -0.130

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
IFT172 Ubiquitylation K656 0.295 _CFSALGQVAK(gl)AR_
IFT172 Ubiquitylation K781 -0.224 _AGLPAK(gl)AAR_
IFT172 Ubiquitylation K696 -0.461 _LAMLEKNYK(gl)_

Background Information for IFT172:


Pubmed-IFT172 »
Uniprot-IFT172 »
Biogrid-IFT172 »
ProteomicsDB-IFT172 »

Tumorportal-IFT172 »
COSMIC-IFT172 »
GenomeRNAi-IFT172 »
Genecards-IFT172


Protein-protein Interactions for IFT172
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait CORO1A Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait DNAJC7 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait FGF8 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait IFT57 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait ISOC2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait KRBA1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TTC30A Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TTC30B Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in IFT172
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members ARM-type_fold IPR016024 9.26
Category members WD40_repeat_dom IPR017986 1.39
Category members WD40_repeat IPR001680 0.52
Category members Quino_amine_DH_bsu IPR011044 0


Protein complexes (CORUM database) featuring IFT172
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring IFT172
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005488 binding Database 9.32
Category members GO Category GO:0007224 smoothened signaling pathway Database 2.11
Category members GO Category GO:0016485 protein processing Database 0.57
Category members Pathway Pathway_984 PID_HEDGEHOG_GLI_PATHWAY 0 0.1
Category members Disease phenotype Jeune_syndrome Jeune syndrome Database 0
Category members Disease phenotype Mainzer-Saldino_Syndrome Mainzer-Saldino Syndrome Database 0
Category members Disease phenotype Saldino-Mainzer_syndrome Saldino-Mainzer syndrome Database 0
Category members GO Category GO:0001841 neural tube formation Database 0
Category members GO Category GO:0005929 cilium Database 0
Category members GO Category GO:0007368 determination of left/right symmetry Database 0
Category members GO Category GO:0009953 dorsal/ventral pattern formation Database 0
Category members GO Category GO:0021522 spinal cord motor neuron differentiation Database 0
Category members GO Category GO:0042384 cilium assembly Database 0


.

© Copyright Svejstrup Laboratory 2015