RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
MGA	3	-1.560	2.090	-0.565	-0.808	-0.186	-0.167	0.160
MGA	3	-1.560	2.090		0.052	0.179
TFAP4	1	1.270	-0.790
SPECC1L	1	2.430	-1.240				-0.774	-0.472
USF2	1	0.080	-0.210		0.151	-0.093
USF2	1	0.080	-0.210				0.695	4.891
MLX	1	2.920	-1.160
NCOA2	1	-0.210	-0.230
MLXIP	1	-1.750	2.670
TCF3	0	0.270	-0.020
SREBF1	0	0.540	-0.490
SREBF1	0	0.540	-0.490
NCOA1	0	1.240	-0.460
LRRFIP2	0
HIF1A	0	-0.480	0.400
AHR	0	-1.080	1.020
MYF6	0				-0.145	-0.308
SIM1	0	-0.140	-0.520
TFEB	0	0.270	0.450
HES1	0	-0.940	0.860
ID2	0	-0.080	-0.630
MXI1	0	-0.940	0.910
TWIST1	0	-0.640	1.150
MXD4	0	1.700	-1.110
NCOA3	0	0.000	-0.330
MAX	0	-0.780	0.530		-0.276	0.290
MAX	0	-0.780	0.530
BHLHE40	0	-0.330	0.040
MYC	0	0.170	0.550	-2.443	-0.949	-0.454		-1.290
TCF12	0	0.940	-0.150
ARNT	0	1.120	-0.500
USF1	0	-0.540	1.070		0.151	-0.093
SIM2	0	1.780	-1.300
HAND2	0	0.000	0.600
EBF1	0	0.210	-0.350
ID4	0	0.670	-0.690
HES4	0	-1.040	1.650
SREBF2	0	0.120	-0.140
MXD3	0	-0.210	-0.290
TWIST2	0	-0.590	0.140
SPECC1L-AD	0						-0.774	-0.472

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AHR	Ubiquitylation	K641		-1.506	_QVVVEPQQQLCQK(gl)MK_
ARNT	Phosphorylation	S81		1.133	_FARS(ph)DDEQSSADKER_
ARNT	Ubiquitylation	K421		-2.502	_DSFQQVVK(gl)LK_
BHLHE40	Ubiquitylation	K159		-0.521	_EVLQYLAK(gl)HENTR_
BHLHE40	Ubiquitylation	K262		-1.135	_SEQPCFK(gl)SDHGR_
BHLHE40	Phosphorylation	S383		-2.162	_LPS(ph)PLPAHPSVDSSVLLQALKPIPPLNLETKD_
EBF1	Ubiquitylation	K455	-0.280		_LQK(gl)VIPR_
HAND2	Ubiquitylation	K183	0.800	1.236	_K(gl)ELNEILK_
HES1	Ubiquitylation	K66		0.212	_TLILDALK(gl)K_
HES1	Ubiquitylation	K67		0.212	_TLILDALK(gl)K_
HES1	Ubiquitylation	K109	-0.891		_AQMTAALSTDPSVLGK(gl)YR_
HES4	Ubiquitylation	K70		-3.385	_GTQPVPDPQSSKPVMEK(gl)R_
HIF1A	Ubiquitylation	K10		-1.686	_(ac)MEGAGGANDK(gl)K_
HIF1A	Ubiquitylation	K11		-1.686	_(ac)MEGAGGANDK(gl)K_
HIF1A	Ubiquitylation	K173		-0.662	_MK(gl)CTLTSR_
HIF1A	Ubiquitylation	K186		-0.590	_TMNIK(gl)SATWK_
HIF1A	Ubiquitylation	K252		-0.784	_HSLDM(ox)K(gl)FSYCDER_
HIF1A	Ubiquitylation	K371		-0.508	_PVESSDMK(gl)MTQLFTK_
HIF1A	Ubiquitylation	K378		-0.077	_MTQLFTK(gl)VESEDTSSLFDK_
HIF1A	Ubiquitylation	K390		-0.348	_VESEDTSSLFDK(gl)LKK_
HIF1A	Ubiquitylation	K392		-0.546	_VESEDTSSLFDKLK(gl)_
HIF1A	Ubiquitylation	K393		-0.451	_VESEDTSSLFDKLKK(gl)_
HIF1A	Ubiquitylation	K710		-1.696	_TTVPEEELNPK(gl)ILALQNAQR_
ID2	Phosphorylation	S14		-0.139	_NS(ph)LSDHSLGISR_
ID4	Phosphorylation	S5	-0.437	-0.234	_AVS(ph)PVRPSGR_
LRRFIP2	Phosphorylation	S328	0.585	0.609	_RGS(ph)GDTSSLIDPDTSLSELR_
LRRFIP2	Phosphorylation	T331		0.374	_RGSGDT(ph)SSLIDPDTSLSELR_
LRRFIP2	Phosphorylation	S333	0.561		_RGSGDTSS(ph)LIDPDTSLSELR_
MAX	Phosphorylation	S2	0.341	-0.060	_(ac)S(ph)DNDDIEVES(ph)DEEQPR_
MAX	Phosphorylation	S2	0.510	0.568	_(ac)S(ph)DNDDIEVESDADKR_
MAX	Phosphorylation	S11	0.341	-0.060	_(ac)S(ph)DNDDIEVES(ph)DEEQPR_
MAX	Phosphorylation	S11	-0.408	0.069	_(ac)S(ph)DNDDIEVES(ph)DADKR_
MAX	Ubiquitylation	K57	-0.903	0.246	_DSVPSLQGEK(gl)ASR_
MGA	Phosphorylation	S56	0.206	-0.462	_TDQGILVTNQDACALASSVSS(ph)PVK_
MGA	Phosphorylation	S449	2.321	3.511	_WLPSS(ph)PSGVAK_
MGA	Phosphorylation	S645		-0.802	_NTPVS(ph)PGSTFPDVKPDLEDVDGVLFVSFESK_
MGA	Ubiquitylation	K715	1.514		_ELIEDLK(gl)TLR_
MGA	Ubiquitylation	K791	1.310		_TNDFTK(gl)IK_
MGA	Ubiquitylation	K817	0.432	-0.999	_NEGGNSESSLK(gl)NR_
MGA	Phosphorylation	S924	-0.700	-0.785	_SILPYPVS(ph)PK_
MGA	Ubiquitylation	K1201	-0.386		_GK(gl)LLTGIK_
MGA	Ubiquitylation	K1207	-0.851		_LLTGIK(gl)SPR_
MGA	Phosphorylation	S1208	1.646	1.566	_LLTGIKS(ph)PR_
MGA	Phosphorylation	S2620		-1.069	_GPLFSGPVVAVS(ph)PDLLESDLKPQVAGSAVALPENDDLFMMPR_
MGA	Phosphorylation	S2898	-0.139	-0.119	_ELPDVQGESDSIS(ph)PLLLHLEDDDFSENEK_
MGA	Phosphorylation	S2910	-0.546		_ELPDVQGESDSISPLLLHLEDDDFS(ph)ENEK_
MLX	Phosphorylation	S7	0.036	-0.288	_(ac)TEPGAS(ph)PEDPWVK_
MLX	Ubiquitylation	K173	-1.900	0.566	_LSK(gl)AIVLQK_
MLX	Ubiquitylation	K209		0.448	_DVTALK(gl)IMK_
MLXIP	Phosphorylation	S9	0.031	0.242	_(ac)AADVFMCS(ph)PR_
MXD3	Ubiquitylation	K81		-0.016	_LK(gl)QQMPLGADCAR_
MXD4	Ubiquitylation	K99		-0.274	_TK(gl)AAGLVR_
MXD4	Ubiquitylation	K152		1.246	_HTTLSLLK(gl)R_
MXD4	Ubiquitylation	K172		0.992	_ALSIK(gl)EQLQQEHR_
MXI1	Ubiquitylation	K113	-0.589	-0.368	_HTTLGLLNKAK(gl)_
MXI1	Ubiquitylation	K125		-0.151	_K(gl)SQHQLENLER_
MYC	Phosphorylation	S20	-1.444	-1.145	_PLNVS(ph)FTNR_
MYC	Phosphorylation	T72	-1.699	-1.813	_FELLPT(ph)PPLS(ph)PSRR_
MYC	Phosphorylation	S76	-1.777	-1.435	_FELLPTPPLS(ph)PSR_
MYC	Phosphorylation	S81		0.459	_S(ph)GLCSPSYVAVTPFSLR_
MYC	Phosphorylation	S85	0.199	0.073	_SGLCS(ph)PSYVAVTPFSLR_
MYC	Ubiquitylation	K162	-2.475	-1.259	_LVSEK(gl)LASYQAAR_
MYC	Phosphorylation	S295		-0.903	_SESGS(ph)PSAGGHSKPPHSPLVLK_
MYC	Phosphorylation	S307		-1.486	_SES(ph)GSPSAGGHSKPPHS(ph)PLVLK_
MYC	Ubiquitylation	K340		-2.449	_VK(gl)LDSVR_
MYC	Ubiquitylation	K403		-3.432	_DQIPELENNEK(gl)APK_
NCOA1	Phosphorylation	S22	0.503	0.810	_KGS(ph)PCDTLASSTEK_
NCOA2	Phosphorylation	S699	-0.159	-0.104	_LLQDSSS(ph)PVDLAK_
NCOA2	Phosphorylation	S771	1.654	0.621	_LDS(ph)KTDPASNTK_
NCOA3	Phosphorylation	S861	-0.217	-0.429	_AVS(ph)LDSPVSVGSSPPVK_
NCOA3	Phosphorylation	S870	-0.416	-0.360	_AVS(ph)LDSPVSVGS(ph)SPPVK_
NCOA3	Phosphorylation	S1333		-0.364	_VSS(ph)PPNAMMSSR_
SIM1	Ubiquitylation	K51		-0.897	_LTTSYLK(gl)MR_
SIM2	Ubiquitylation	K51		-0.897	_LTTSYLK(gl)MR_
SPECC1L	Phosphorylation	S384	0.662	0.715	_KGS(ph)SGNASEVSVACLTER_
SPECC1L	Phosphorylation	S831		-0.105	_RS(ph)STSSEPTPTVK_
SPECC1L	Phosphorylation	S832	0.196	-0.034	_RSS(ph)TSSEPTPTVK_
SPECC1L	Ubiquitylation	K939	-0.429	-1.893	_VPAMESAK(gl)TLSVSR_
SPECC1L-ADORA2A	Phosphorylation	S384	0.662	0.715	_KGS(ph)SGNASEVSVACLTER_
SPECC1L-ADORA2A	Phosphorylation	S831		-0.105	_RS(ph)STSSEPTPTVK_
SPECC1L-ADORA2A	Phosphorylation	S832	0.196	-0.034	_RSS(ph)TSSEPTPTVK_
SPECC1L-ADORA2A	Ubiquitylation	K939	-0.429	-1.893	_VPAMESAK(gl)TLSVSR_
SREBF1	Ubiquitylation	K321		-0.637	_LAAGSK(gl)APASAQSR_
SREBF1	Ubiquitylation	K579	-1.649	0.673	_K(gl)QADLDLAR_
SREBF2	Ubiquitylation	K340		-0.521	_TTHNIIEK(gl)R_
SREBF2	Ubiquitylation	K386		-0.496	_YLQQVNHK(gl)LR_
SREBF2	Phosphorylation	S469		-0.456	_VKDEPDS(ph)PPVALGMVDR_
SREBF2	Ubiquitylation	K579	-1.649	0.673	_K(gl)QADLDLAR_
SREBF2	Ubiquitylation	K660		-0.584	_RATPATEAGFEDEAK(gl)TSAR_
SREBF2	Ubiquitylation	K778		-0.770	_SWSVK(gl)SAAK_
SREBF2	Ubiquitylation	K782		-0.435	_SAAK(gl)ESLYCAQR_
SREBF2	Ubiquitylation	K822		-1.768	_AIESLVKPQAKK(gl)_
SREBF2	Ubiquitylation	K865		-0.540	_SSVLK(gl)SALGPDIICR_
SREBF2	Ubiquitylation	K1067		-1.490	_TTQSTK(gl)HGEVDAWPGQR_
TCF12	Phosphorylation	S385	-0.190	-0.444	_PGGQAPS(ph)SPSYENSLHSLQSR_
TCF12	Phosphorylation	S559	0.763	0.520	_TSS(ph)TNEDEDLNPEQK_
TCF3	Phosphorylation	S328	0.865	0.756	_AGAPGALS(ph)PSYDGGLHGLQSK_
TFAP4	Ubiquitylation	K114	1.008	2.315	_LLQQNTQLK(gl)R_
TFAP4	Phosphorylation	S123		0.832	_RFIQELSGS(ph)SPKR_
TFAP4	Phosphorylation	S124	0.584	0.494	_RFIQELSGSS(ph)PK_
TFEB	Phosphorylation	S541		-0.724	_KDLDLMLLDDSLLPLASDPLLSTMS(ph)PEASK_
TFEB	Phosphorylation	S555	0.499	0.811	_RSSFS(ph)MEEGDVL_
TWIST1	Ubiquitylation	K150		-0.176	_IQTLK(gl)LAAR_
TWIST2	Ubiquitylation	K150		-0.176	_IQTLK(gl)LAAR_
USF1	Ubiquitylation	K269	-0.265	0.440	_IIPDCNADNSK(gl)TGASK_
USF1	Phosphorylation	S279	-0.121	0.837	_GGILS(ph)KACDYIR_
USF1	Ubiquitylation	K300	-0.172		_MQETFK(gl)EAER_
USF2	Ubiquitylation	K269	-0.265	0.440	_IIPDCNADNSK(gl)TGASK_
USF2	Phosphorylation	S279	-0.121	0.837	_GGILS(ph)KACDYIR_
USF2	Ubiquitylation	K300	-0.172		_MQETFK(gl)EAER_